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Upstream	
  Processing:	
  	
  
         Dimensionality	
  and	
  Perfusion	
  	
  	
  



                           Add Extra Dimension to Your Innovation™
©	
  3D	
  BIOTEK,	
  LLC	
  
2D	
  Is	
  Easier,	
  at	
  What	
  Cost?	
  

                                                                                         Scale-­‐up	
  ProducBon:	
  Cell	
  lines	
  and	
  Biologics	
  
                                                      2D	
                                                Fermenter/2D	
  
                      DissociaBon/Maintenance	
  of	
  Cells/Vaccine	
  ProducBon	
  

        1900’s	
                                                         1960’s	
                                                       2000’s	
  


                                Glass-­‐Based	
  Tissue	
  Culture	
                                           2D	
  
                                                                                      Polystyrene-­‐Based	
  Tissue	
  Culture	
  




        www.Pubmed.gov	
  	
  
                                                                                                                                                   2	
  
                                                                                                                                                     2	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
1.	
  Lack	
  of	
  Dimensional	
  Relevance	
  
                                Brain	
  	
     Brain	
  	
  


          Lung,	
  Breast	
  	
                         Lung,	
  Breast	
  	
  

                  Liver	
  	
                                   Liver	
  	
  



                                                                                  ≠	
  
        Bone,	
  CarDlage	
  	
                    Bone,	
  CarBlage	
  	
                Petri	
  Dish	
  

                                                                                                              3	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
2.	
  Lack	
  of	
  3D	
  Perfusion	
  	
  
                           3D	
  Scaffold	
                                        2D	
  Surface	
  
                                                                                    ConvecBve	
  Flow	
  	
  




                                                                   ≠	
  
                                           Perfusion	
  Flow	
  
                   UpregulaBon	
  of	
  global	
  	
  gene	
  expression	
     Uncorrelated	
  Gene	
  Expression	
  
                   e.g.	
  ECM,	
  proliferaBon,	
  and	
  differenBaBon	
  
                   DownregulaBon	
  of	
  hypoxia-­‐related	
  genes	
  
                                                                                                                  4	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
3.	
  Lack	
  of	
  volumetric	
  Growth	
  	
  
                           3D	
  Scaffold	
                                        2D	
  Surface	
  
                                                                                       Monolayer	
  	
  




                                         Tissue-­‐Like	
  	
  
                                                                 ≠	
  
                Longer	
  ProliferaDon	
  Profiles	
  	
                  Shorter	
  ProliferaDon	
  Profiles	
  	
  

                                                                                                               5	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
4.	
  Lack	
  of	
  Scalability	
  	
  	
  


                                                           Total	
  Area	
     3D	
  35-­‐mm	
     T-­‐175	
  	
  
                                                            in	
  cm^2	
       Chambers	
  	
      Flask	
  

                                                            2,809.0	
  	
           4	
  	
          16	
  	
  



                                                         1	
  Loaded	
  Chamber	
  =	
  4	
  T175	
  Flasks	
  	
  

                                35-­‐mm	
  Chamber	
                                                                 6	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
3D	
  Technology:	
  	
  
            Process-­‐Friendly	
  	
  and	
  Biologically	
  Relevant	
  	
  



              Polymer	
  Scaffold	
  Prototyping	
  	
  	
  
              3D	
  Perfusion	
  and	
  Seeding	
  OpDmizaDon	
  

                                                                                7	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
3D	
  Insert™	
  PlaWorm	
  	
  




                       Fiber	
  Diameter	
  	
   Fiber-­‐to-­‐Fiber	
  Spacing	
  	
  	
   Scaffold	
  Layering	
  	
  	
  	
  



                                            Pore	
  Size	
            Scaffold	
  Volume	
  

                                                          3D	
  Geometry	
                                                  8	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
3D	
  Insert™	
  Series	
  	
  	
  
          3D	
  Insert™-­‐Polystyrene	
  

                                             	
  ConfiguraBons:	
  PS(1520)	
  and	
  PS(3040)	
  
                                             PS(1520)	
  =	
  150-­‐um	
  Fiber/200-­‐um	
  Spacing	
  	
  
                                             PS(3040)	
  =	
  300-­‐um	
  Fiber/400-­‐um	
  Spacing	
  
                                             Fit	
  96	
  to	
  6	
  well	
  plate	
  formats	
  
                                             Total	
  number	
  of	
  layers:	
  4	
  
  3D	
  Insert™-­‐Poly-­‐ε-­‐Caprolactone	
  

                                             	
  ConfiguraBons:	
  PCL(3030)	
  and	
  PS(3050)	
  
                                             PCL(3030)	
  =	
  300-­‐um	
  Fiber/300-­‐um	
  Spacing	
  	
  
                                             PCL(3050)	
  =	
  300-­‐um	
  Fiber/500-­‐um	
  Spacing	
  
                                             Fit	
  96	
  to	
  6	
  well	
  plate	
  formats	
  
                                             Total	
  number	
  of	
  layers:	
  6	
                9	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
3D	
  Insert™:	
  Tissue-­‐like	
  Behavior	
  	
  	
  
                                3D	
  Insert™	
  	
                                    Fiber	
  Curvature	
  	
  




                                                                                       NIH	
  3T3	
  	
             MCF-­‐7	
  	
  


                                     Fiber	
  2	
  




                                     Fiber	
  1	
   H.	
  Astrocytes	
                                              hMSCs	
  
                                                           Pore	
  Structure	
  	
  
                                                                                                                                      10	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
Ample	
  Surface	
  Area	
  in	
  Small	
  Volume	
  	
  	
  
                                             Average Total Cell Growth Area
                                     2D               3D InsertTM-PS               3D InsertTM-PCL
                                 6 well                   6 well                       6 well
                                                   1520             54.02 cm2   3030             99.21 cm2
                                9.6    cm2
                                                   3040             52.10 cm2   3050             75.62 cm2
                                12 well                   12 well                      12 well
                                                   1520             21.08 cm2   3030             39.27 cm2
                                 4   cm2
                                                   3040             19.65 cm2   3050             27.90 cm2
                                24 well                   24 well                      24 well
                                                   1520             10.20 cm2   3030             18.28 cm2
                                1.9    cm2
                                                   3040             9.56 cm2    3050             13.74 cm2
                                48 well                   48 well                      48 well
                                                   1520             4.28 cm2    3030             7.74 cm2
                                 1   cm2
                                                   3040             3.78 cm2    3050             6.08 cm2
                                96 well                   96 well                      96 well
                                                   1520             1.36 cm2    3030             2.03 cm2
                                0.32   cm2
                                                   3040             1.21 cm2    3050             1.53 cm2    11	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
3D	
  Technology:	
  Perfusion	
  	
  




                                                                         12	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
3D	
  Perfusion:	
  Large-­‐Scale	
  Perfusion	
  	
  	
  	
  
  3D	
  Chambers	
                                          Pump	
  	
  




        Media	
  
       Reservoir	
  
                                                                           13	
  
©	
  3D	
  BIOTEK,	
  LCC	
  
                                                 CO2/Humidifier	
  	
  
Parts	
  and	
  Features	
  	
  




                                                                   14	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
3D	
  Perfusion	
  Bioreactor:	
  1.	
  Hardware	
  	
  




  • 	
  	
  Durable	
  Metal	
  Frame	
  
   	
   The	
   metal	
   frame	
  	
   is	
   made	
   of	
   strengthened	
   aluminum	
   (anodized)	
   for	
  
  prolonged	
  	
  durability	
  during	
  autoclaving.	
  	
  
   	
  	
  Low	
  humidity	
  peristalBc	
  pump	
  with	
  maximum	
  60	
  rpm	
  	
  
                                                                                                              15	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
3D	
  Perfusion	
  Bioreactor:	
  2.	
  Liquid	
  Handling	
  

                                Media	
  Bo)les	
                     Humidifier	
  Bo)les	
  




    • 	
  	
  Economic	
  and	
  Re-­‐usable	
  	
  	
  
     	
   	
   Media	
   and	
   humidified	
   boeles	
   and	
   accessories	
   are	
   autoclavable,	
  
    e.g.	
   glass	
   boeles,	
   stainless	
   steel,	
   silicon	
   gaskets,	
   and	
   polycarbonate	
  
    caps.	
  Total	
  Media	
  Capacity:	
  400-­‐ml	
  and	
  2-­‐liters	
  	
                        16	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
3D	
  Perfusion	
  Bioreactor:	
  3.	
  Tubing	
  System	
  	
  
                                                                        Tubing	
  and	
  Transport	
  
                                                                         	
  (A)	
  Perfusion	
  Chamber	
  
                                                                         	
  (B)	
  Media	
  System	
  	
  
                                                                         	
  (C)	
  	
  CO2/O2	
  System	
  	
  

                                (A)	
  	
     (C)	
  	
  

             (B)	
  	
  

    • 	
  	
  Media	
  and	
  Gas	
  Transport	
  
     	
  Medical	
  grade	
  clear	
  silicon	
  and	
  beige	
  peristalBc	
  tubing	
  
                                                                                                          17	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
Features:	
  1.	
  Color-­‐Coded	
  Assembly	
  	
  	
  

                                                O	
      Y	
  
                                                                 G	
  
                                        R	
  

                                B	
  
                   G	
  
                                                                         	
  	
  Media	
  Reservoir	
  



                                                 	
  	
  Media	
  
                                                Reservoir	
  
                         CO2/O2	
  
                        Humidifie                                         CO2/O2	
  Humidifier	
  	
  
                           r	
  	
                                                                   18	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
Features:	
  2.	
  ConDnuous	
  Perfusion	
  	
  	
  	
  




                                3D	
  Bioreactor	
  Perfusion	
  Circuitry	
  	
     19	
  
©	
  3D	
  BIOTEK,	
  LCC	
  
Feature:	
  3.	
  Variable	
  Velocity	
  Range	
  
                                                  Bioreactor	
  Chamber	
  Format	
  	
  
                                    24-­‐Well	
  Insert	
  	
   12-­‐Well	
  Insert	
  	
            6-­‐Well	
  Insert	
  	
  
      Velocity(cm/min)	
                     rpm	
                          rpm	
                            rpm	
  

                       0.0	
                  0	
                           0	
                             0	
  
                       0.2	
                1.93	
                         4.84	
                         12.08	
  
                       0.4	
                3.86	
                         9.69	
                         24.15	
  
                       0.6	
                 5.8	
                        14.53	
                         36.23	
  
                       0.8	
                7.73	
                        19.38	
                         48.31	
  	
  
  *Pump	
  maximum	
  rpm	
  capacity	
  is	
  60	
  rpm	
  (Manufacturer	
  SpecificaDons)	
  	
  
                                                                                                                             20	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
Features:	
  4.	
  Streamlined	
  Process	
  	
  	
  	
  

                                                                                                                                                              Media	
  Out	
  



                                                 3	
  h	
  incubaDon	
                                          2.0	
  rpm,	
  24h	
  
                                                 37º	
  C,	
  5%	
  CO2	
                                      Slow	
  Perfusion	
  
                                                                                                             For	
  24	
  well	
  format	
  



                                                 Cell	
  Seeding	
  
                                                 O-­‐Ring	
  
                                                 3D	
  Insert™	
  


                                                                                                                                                              Media	
  In	
  

                                For	
  	
  Perfusion	
  Bioreactor,	
  please	
  visit	
  us	
  at	
  hp://www.3dbiotek.com/web/prod_3dbioreactor.aspx	
  
                                                                                                                                                                       21	
  
©	
  3D	
  BIOTEK,	
  LLC	
  
3D	
  Perfusion	
  Bioreactor	
  
        • 	
   An	
   innovaBve	
   product	
   for	
   scale-­‐up	
   cell	
   culture	
  
        and	
  bioprocessing	
  

        •  	
   The	
   only	
   polymer	
   scaffold-­‐based	
   perfusion	
  
        bioreactor	
  for	
  3D	
  dynamic	
  cell	
  culture	
  

        • 	
   Simple	
   design	
   and	
   least	
   number	
   of	
   parts	
   for	
  
        faster	
  assembly	
  and	
  beeer	
  asepBc	
  condiBons	
  	
  	
  

                                                                                         22	
  
©	
  3D	
  BIOTEK,	
  LLC	
  

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Perfusion scaling slideshare

  • 1. Upstream  Processing:     Dimensionality  and  Perfusion       Add Extra Dimension to Your Innovation™ ©  3D  BIOTEK,  LLC  
  • 2. 2D  Is  Easier,  at  What  Cost?   Scale-­‐up  ProducBon:  Cell  lines  and  Biologics   2D   Fermenter/2D   DissociaBon/Maintenance  of  Cells/Vaccine  ProducBon   1900’s   1960’s   2000’s   Glass-­‐Based  Tissue  Culture   2D   Polystyrene-­‐Based  Tissue  Culture   www.Pubmed.gov     2   2   ©  3D  BIOTEK,  LLC  
  • 3. 1.  Lack  of  Dimensional  Relevance   Brain     Brain     Lung,  Breast     Lung,  Breast     Liver     Liver     ≠   Bone,  CarDlage     Bone,  CarBlage     Petri  Dish   3   ©  3D  BIOTEK,  LLC  
  • 4. 2.  Lack  of  3D  Perfusion     3D  Scaffold   2D  Surface   ConvecBve  Flow     ≠   Perfusion  Flow   UpregulaBon  of  global    gene  expression   Uncorrelated  Gene  Expression   e.g.  ECM,  proliferaBon,  and  differenBaBon   DownregulaBon  of  hypoxia-­‐related  genes   4   ©  3D  BIOTEK,  LLC  
  • 5. 3.  Lack  of  volumetric  Growth     3D  Scaffold   2D  Surface   Monolayer     Tissue-­‐Like     ≠   Longer  ProliferaDon  Profiles     Shorter  ProliferaDon  Profiles     5   ©  3D  BIOTEK,  LLC  
  • 6. 4.  Lack  of  Scalability       Total  Area   3D  35-­‐mm   T-­‐175     in  cm^2   Chambers     Flask   2,809.0     4     16     1  Loaded  Chamber  =  4  T175  Flasks     35-­‐mm  Chamber   6   ©  3D  BIOTEK,  LLC  
  • 7. 3D  Technology:     Process-­‐Friendly    and  Biologically  Relevant      Polymer  Scaffold  Prototyping        3D  Perfusion  and  Seeding  OpDmizaDon   7   ©  3D  BIOTEK,  LLC  
  • 8. 3D  Insert™  PlaWorm     Fiber  Diameter     Fiber-­‐to-­‐Fiber  Spacing       Scaffold  Layering         Pore  Size   Scaffold  Volume   3D  Geometry   8   ©  3D  BIOTEK,  LLC  
  • 9. 3D  Insert™  Series       3D  Insert™-­‐Polystyrene      ConfiguraBons:  PS(1520)  and  PS(3040)    PS(1520)  =  150-­‐um  Fiber/200-­‐um  Spacing      PS(3040)  =  300-­‐um  Fiber/400-­‐um  Spacing    Fit  96  to  6  well  plate  formats    Total  number  of  layers:  4   3D  Insert™-­‐Poly-­‐ε-­‐Caprolactone      ConfiguraBons:  PCL(3030)  and  PS(3050)    PCL(3030)  =  300-­‐um  Fiber/300-­‐um  Spacing      PCL(3050)  =  300-­‐um  Fiber/500-­‐um  Spacing    Fit  96  to  6  well  plate  formats    Total  number  of  layers:  6   9   ©  3D  BIOTEK,  LLC  
  • 10. 3D  Insert™:  Tissue-­‐like  Behavior       3D  Insert™     Fiber  Curvature     NIH  3T3     MCF-­‐7     Fiber  2   Fiber  1   H.  Astrocytes   hMSCs   Pore  Structure     10   ©  3D  BIOTEK,  LLC  
  • 11. Ample  Surface  Area  in  Small  Volume       Average Total Cell Growth Area 2D 3D InsertTM-PS 3D InsertTM-PCL 6 well 6 well 6 well 1520 54.02 cm2 3030 99.21 cm2 9.6 cm2 3040 52.10 cm2 3050 75.62 cm2 12 well 12 well 12 well 1520 21.08 cm2 3030 39.27 cm2 4 cm2 3040 19.65 cm2 3050 27.90 cm2 24 well 24 well 24 well 1520 10.20 cm2 3030 18.28 cm2 1.9 cm2 3040 9.56 cm2 3050 13.74 cm2 48 well 48 well 48 well 1520 4.28 cm2 3030 7.74 cm2 1 cm2 3040 3.78 cm2 3050 6.08 cm2 96 well 96 well 96 well 1520 1.36 cm2 3030 2.03 cm2 0.32 cm2 3040 1.21 cm2 3050 1.53 cm2 11   ©  3D  BIOTEK,  LLC  
  • 12. 3D  Technology:  Perfusion     12   ©  3D  BIOTEK,  LLC  
  • 13. 3D  Perfusion:  Large-­‐Scale  Perfusion         3D  Chambers   Pump     Media   Reservoir   13   ©  3D  BIOTEK,  LCC   CO2/Humidifier    
  • 14. Parts  and  Features     14   ©  3D  BIOTEK,  LLC  
  • 15. 3D  Perfusion  Bioreactor:  1.  Hardware     •     Durable  Metal  Frame       The   metal   frame     is   made   of   strengthened   aluminum   (anodized)   for   prolonged    durability  during  autoclaving.          Low  humidity  peristalBc  pump  with  maximum  60  rpm     15   ©  3D  BIOTEK,  LLC  
  • 16. 3D  Perfusion  Bioreactor:  2.  Liquid  Handling   Media  Bo)les   Humidifier  Bo)les   •     Economic  and  Re-­‐usable             Media   and   humidified   boeles   and   accessories   are   autoclavable,   e.g.   glass   boeles,   stainless   steel,   silicon   gaskets,   and   polycarbonate   caps.  Total  Media  Capacity:  400-­‐ml  and  2-­‐liters     16   ©  3D  BIOTEK,  LLC  
  • 17. 3D  Perfusion  Bioreactor:  3.  Tubing  System     Tubing  and  Transport      (A)  Perfusion  Chamber      (B)  Media  System        (C)    CO2/O2  System     (A)     (C)     (B)     •     Media  and  Gas  Transport      Medical  grade  clear  silicon  and  beige  peristalBc  tubing   17   ©  3D  BIOTEK,  LLC  
  • 18. Features:  1.  Color-­‐Coded  Assembly       O   Y   G   R   B   G      Media  Reservoir      Media   Reservoir   CO2/O2   Humidifie CO2/O2  Humidifier     r     18   ©  3D  BIOTEK,  LLC  
  • 19. Features:  2.  ConDnuous  Perfusion         3D  Bioreactor  Perfusion  Circuitry     19   ©  3D  BIOTEK,  LCC  
  • 20. Feature:  3.  Variable  Velocity  Range   Bioreactor  Chamber  Format     24-­‐Well  Insert     12-­‐Well  Insert     6-­‐Well  Insert     Velocity(cm/min)   rpm   rpm   rpm   0.0   0   0   0   0.2   1.93   4.84   12.08   0.4   3.86   9.69   24.15   0.6   5.8   14.53   36.23   0.8   7.73   19.38   48.31     *Pump  maximum  rpm  capacity  is  60  rpm  (Manufacturer  SpecificaDons)     20   ©  3D  BIOTEK,  LLC  
  • 21. Features:  4.  Streamlined  Process         Media  Out   3  h  incubaDon   2.0  rpm,  24h   37º  C,  5%  CO2   Slow  Perfusion   For  24  well  format   Cell  Seeding   O-­‐Ring   3D  Insert™   Media  In   For    Perfusion  Bioreactor,  please  visit  us  at  hp://www.3dbiotek.com/web/prod_3dbioreactor.aspx   21   ©  3D  BIOTEK,  LLC  
  • 22. 3D  Perfusion  Bioreactor   •    An   innovaBve   product   for   scale-­‐up   cell   culture   and  bioprocessing   •    The   only   polymer   scaffold-­‐based   perfusion   bioreactor  for  3D  dynamic  cell  culture   •    Simple   design   and   least   number   of   parts   for   faster  assembly  and  beeer  asepBc  condiBons       22   ©  3D  BIOTEK,  LLC