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NEXT-GENERATION HIGH-DENSITY
SELF-ASSEMBLING
FUNCTIONAL PROTEIN ARRAYS
By
Arindam Sain
 Serum screening to identify antibody immune responses for
cancer
 Detect post-translational modifications such as
phosphorylation
 Identify protein-protein or protein-DNA interactions
 High throughput quantification of protein binding kinetics
by coupling Protein array with surface plasmon resonance
(SPRi)
APPLICATIONS
CONVENTIONAL PROTEIN MICROARRAY
NEXT GENERATION CELL FREE PROTEIN
MICROARRAY
 Replaces printing proteins with the more reliable and less expensive
process of printing DNA
 Avoids the need to express, purify and store individual proteins
 Displays 95% of sequence-verified full-length genes
 Protein display levels are consistent from protein to protein(e.g.
differential MW)
 Assures protein integrity by using both mammalian expression
machinery and chaperone proteins to synthesize and fold proteins
 Easy to create custom arrays
MAMMALIAN CELL FREE EXPRESSION
NUCLEIC ACID PROGRAMMABLE PROTEIN
ARRAY-NAPPA
 Plasmid encoding target proteins fused with an affinity tag (e.g. GST)
are affixed to surface
 Array is activated by the addition of a cell free expression system
(IVTT mixture)
 Target proteins are expressed and immobilized in situ, and detected
using anti-tag antibody
WORK FLOW OF NAPPA
LaBaer et al
In 2016, cell-free protein microarrays made the jump
from bench to bedside with the launch of Provista’s
Videssa® test
The test, the first blood-based proteomics biomarker
assay for early breast cancer detection, includes 28
autoantibody biomarkers that were originally discovered
with cell-free protein arrays
Videssa® test can significantly reduce the number of
unnecessary breast biopsies
RECENT ADVANCEMENTS
Anderson et al.
POTENTIAL WORKFLOW
DRUG SCREENING
Rauf et al., 2018
THANK YOU

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Presentation on protein Array

  • 2.  Serum screening to identify antibody immune responses for cancer  Detect post-translational modifications such as phosphorylation  Identify protein-protein or protein-DNA interactions  High throughput quantification of protein binding kinetics by coupling Protein array with surface plasmon resonance (SPRi) APPLICATIONS
  • 4. NEXT GENERATION CELL FREE PROTEIN MICROARRAY  Replaces printing proteins with the more reliable and less expensive process of printing DNA  Avoids the need to express, purify and store individual proteins  Displays 95% of sequence-verified full-length genes  Protein display levels are consistent from protein to protein(e.g. differential MW)  Assures protein integrity by using both mammalian expression machinery and chaperone proteins to synthesize and fold proteins  Easy to create custom arrays
  • 5. MAMMALIAN CELL FREE EXPRESSION
  • 6. NUCLEIC ACID PROGRAMMABLE PROTEIN ARRAY-NAPPA  Plasmid encoding target proteins fused with an affinity tag (e.g. GST) are affixed to surface  Array is activated by the addition of a cell free expression system (IVTT mixture)  Target proteins are expressed and immobilized in situ, and detected using anti-tag antibody
  • 7. WORK FLOW OF NAPPA
  • 9. In 2016, cell-free protein microarrays made the jump from bench to bedside with the launch of Provista’s Videssa® test The test, the first blood-based proteomics biomarker assay for early breast cancer detection, includes 28 autoantibody biomarkers that were originally discovered with cell-free protein arrays Videssa® test can significantly reduce the number of unnecessary breast biopsies RECENT ADVANCEMENTS Anderson et al.
  • 12.