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Kinetics of protein binding
Dr. Ali Elmehdawi
• Assumptions: The drug-protein binding is
reversible.
• On the protein molecule one binding site is
present
• Under this condition the protein binding of
drug may be described as follows:
• Protein (P) + Drug (D) Drug-Protein
complex (DP ) .
• or, P + D P D
PD: protein binding complex
P: unbounded protein
D: Free drug
Ka: Association constant
PD = Ka{P}{D} eq(1)
Ka = {PD}/{P}{D}
Pt : Total amount protein
{Pt} = {P} + {PD} (2)
{P} = {Pt} – {PD} (3)
Substituting the value of {P} in equation (1)
{PD} = Ka({Pt} – {PD}){D}
{PD} = Ka{D}{Pt} – Ka{D}{PD}
Ka{D}{Pt} ={PD} + Ka{D}{PD}
Ka{D}{Pt} = {PD}(1+Ka{D})
{PD} = Ka{D}{Pt} / 1+ Ka{D}
{PD} / {Pt} = Ka{D} / 1 + Ka{D}
r = {PD} / {Pt} = Ka{D} / 1 + Ka{D} (4)
r describes the situation where 1 mole of drug
binds to one mole of protein
Equation 4 is one of the form of the langmuir
If N is the number of the independent binding
site available then eq 4 written as
r = N .( Ka{D} / 1 + Ka{D} (5)
1/r = 1/ N Ka{D} + 1 / N (6)
Rearrange eq nu (5)
NKa{D} = r + rKa{D}
r = Nka{D} – rKa{D}
r/{D} = NKa – rKa (7)
• Direct Plot:
• It is made by plotting r versus [D] as shown
Note that when all the binding sites are
occupied by the drug, the protein is saturated
and plateau is reached.
At the plateau, r = N. When r =N/2, [D] = 1/Ka.
• Scatchard Plot:
• It is made by transforming equation 7 into a
linear form. Thus,
• r/[D] = N Ka – rKa (7)
A plot of r / [D] versus r yields a straight. Slope of the line = – Ka, y intercept = NKa
and x-intercept = N.
• Klotz Plot/ Lineweaver-Burke Plot (Double
Reciprocal Plot):
1 / r = 1 / nka [D] + 1/n (6)
A plot of 1/ r versus 1/ [D] yields a straight line with slope 1/ NKa and y-intercept
1/ N
• Hitchcock Plot:
• It is made by rewriting equation by dividing all
by Nka
NKa [D] / r = 1 + Ka [D]
[D] / r = 1/ NKa + [D] / N
plot of [D] / r versus [D] yields a straight line with slope 1/N and y-intercept 1/ NKa

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biopharma4.pptx

  • 1. Kinetics of protein binding Dr. Ali Elmehdawi
  • 2. • Assumptions: The drug-protein binding is reversible. • On the protein molecule one binding site is present • Under this condition the protein binding of drug may be described as follows: • Protein (P) + Drug (D) Drug-Protein complex (DP ) . • or, P + D P D
  • 3. PD: protein binding complex P: unbounded protein D: Free drug Ka: Association constant PD = Ka{P}{D} eq(1) Ka = {PD}/{P}{D}
  • 4. Pt : Total amount protein {Pt} = {P} + {PD} (2) {P} = {Pt} – {PD} (3) Substituting the value of {P} in equation (1) {PD} = Ka({Pt} – {PD}){D} {PD} = Ka{D}{Pt} – Ka{D}{PD} Ka{D}{Pt} ={PD} + Ka{D}{PD} Ka{D}{Pt} = {PD}(1+Ka{D}) {PD} = Ka{D}{Pt} / 1+ Ka{D}
  • 5. {PD} / {Pt} = Ka{D} / 1 + Ka{D} r = {PD} / {Pt} = Ka{D} / 1 + Ka{D} (4) r describes the situation where 1 mole of drug binds to one mole of protein Equation 4 is one of the form of the langmuir If N is the number of the independent binding site available then eq 4 written as r = N .( Ka{D} / 1 + Ka{D} (5) 1/r = 1/ N Ka{D} + 1 / N (6)
  • 6. Rearrange eq nu (5) NKa{D} = r + rKa{D} r = Nka{D} – rKa{D} r/{D} = NKa – rKa (7)
  • 7. • Direct Plot: • It is made by plotting r versus [D] as shown Note that when all the binding sites are occupied by the drug, the protein is saturated and plateau is reached.
  • 8. At the plateau, r = N. When r =N/2, [D] = 1/Ka.
  • 9. • Scatchard Plot: • It is made by transforming equation 7 into a linear form. Thus, • r/[D] = N Ka – rKa (7)
  • 10. A plot of r / [D] versus r yields a straight. Slope of the line = – Ka, y intercept = NKa and x-intercept = N.
  • 11. • Klotz Plot/ Lineweaver-Burke Plot (Double Reciprocal Plot): 1 / r = 1 / nka [D] + 1/n (6)
  • 12. A plot of 1/ r versus 1/ [D] yields a straight line with slope 1/ NKa and y-intercept 1/ N
  • 13. • Hitchcock Plot: • It is made by rewriting equation by dividing all by Nka NKa [D] / r = 1 + Ka [D] [D] / r = 1/ NKa + [D] / N
  • 14. plot of [D] / r versus [D] yields a straight line with slope 1/N and y-intercept 1/ NKa