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On the modeling of the surface area that actually 
contributes to the current density produced in 
microbial electrochemical systems 
Alessandro Carmona1, Rémy Lacroix2, Serge Da Silva2, 
Eric Trably1 and Nicolas Bernet1 
1INRA, Laboratoire de Biotechnologie de l’Environnement, Narbonne, France, 
alessandro.carmona@supagro.inra.fr; 26T-MIC Ingénieries, Toulouse, France
Context
Overall view of bioelectrochemical systems 
Configuration of a BES: membrane specificity, type of catalysts at both electrodes, and the 
source of the reducing power 
Harnisch, F. et al., ChemSusChem. 2009; Franks, A.E. et al., Biofuels. 2010; Logan, B.E. et al., Environ. Sci. Technol. 2008 
or or 
Anode 
Power supply 
Renewable energy 
Cathode 
C+ 
A-e- 
e- 
Catalysts at the Anode 
Microbially 
catalysed 
CO2 
O2 
H2O 
H+ 
Membrane specificity 
Rabaey, K. et al, Nat. Rev. Micro. 2010. 8(10): p. 706-716 
Catalysts at the Cathode 
Product 
„electrochemical device that exploits living 
Product 
microbial cells for the bioelectrocatalysis of anodic-oxidation 
and/or cathodic-reduction reactions“ 
Harnisch F. et al. Chem. Asian J. 2012, 7, 466 – 475 
e- 
Organics 
Chemially 
or catalysed 
H2 
e- 
Electron 
acceptor 
Microbially 
catalysed 
Chemially 
catalysed 
or 
Electron 
acceptor 
C+ 
A-A-C+ 
C+ 
A-or 
or 
cation anion no membrane 
exchange membrane 
Power production 
Short circuit 
e- e-e-e- 
e-e- 
e- 
Reducing power
Experimental approach in METS 
Operational parameters 
Electrochemistry 
CA, CV, EIS… 
Reactor design 
Microscopy 
Fingerprinting SEM, CLSM.. 
16S rRNA 
Harnisch and Rabaey, ChemSusChem. 2012 
pH 
T° 
OLR 
CE% 
HRT
Electrodes in bioelectrochemical systems 
Carbon paper Graphite plate Carbon mesh Granular graphite 
Polycrystalline 
Carbon rod Carbon brush Carbon felt Reticulated 
vitrified carbon 
graphite 
Photographs taken from: Wei J. et al. Bioresour. Technol. 2011. 102: p. 9335–9344
Current density in microbial BESs 
Modified from: 
Schröder, U., J. Solid State Electrochem. 2011 
Chen, S. et al., Energy Environ Sci. 2012 
Chen, S. et al., Energy Environ Sci. 2011 
Zhao, Y. et al., Chem. Eur. J. 2010,
What surface should be used to calculate current? in BESs!!! 
“Flat stainless steel has produced up to 20 A/m2…” “these data must be qualified 
because the 2 sides of the electrode were exposed to the (medium) solution 
while the current density was calculated with respect to 1 side only” 
Rimboud, M., Physical Chemistry Chemical Physics. 2014 
e- e- 
e- e- 
“An example of poor design would be a cell with a plate working electrode with 
both sides active and a counter electrode facing only one surface” 
Drawn from: Pletcher, D., Royal society of chemistry. 2009 
Potential distribution in mV at the 
surface of a ring-shaped WE using an 
120 
mV 
“The varying iR drops along the different current paths produce a nonuniform potential across the 
WE’s surface, and as a consequence there is a nonuniform current density on the WE’s surface. 
These effects can cause undesired side reactions or ineffective use of the total electrode area” 
Drawn from: Bard, A., Wiley. 2001 
WE 
CE 
125 
33 
25 
75 45 
85 
63 
95 
113 
unsymetrical CE 
Insulated 
Insulated 
mV 
mV 
Anode 
Cathode 
Reference electrode 
e.g., vs. Ag/AgCl
Experimental approach 
Cronoamperometry Cyclic voltammetry CLSM COMSOL* 
current production distribution, electron transfer and biofilm formation/structure 
“COMSOL Multiphysics is an engineering simulation software that facilitates all steps of a computational modeling 
process; such as defining the geometry, surface meshing, specifying the physics, solving, and then visualizing the results” 
Dalak, E., M.Sc. Thesis. 2012 
Do both sides of a planar electrode material 
contribute to electron transfer?
Materials and methods
Anode-respiring bacterium model 
Nanowire? 
NADH 
NAD+ 
NAD+ 
2CO2 
Geoalkalibacter subterraneus 
Electrons 
8H+ 
Electrode 
Cytochrome pool? 
e- 
8 e- 
2H2O 
CH3COOH 
turnover 
Ef 
-365 mV 
Geoalkalibacter cell (5-6 μm) 
0.0 
-0.5 
-1.0 
Potential vs. SCE (V) at pH 7 
non 
turnover 
Ef 
-428 mV 
CLSM confirmed a thick biofilm composed 
of several layers of metabolically active 
bacteria all over the electrode 
Electrons 
e- 
Conductive filaments? 
Electrode 
Single bacterial cells 
Biofilm thickness :76 μm 
Cyclic voltammetry indicates an direct 
electron transfer mechanism via a conduit 
with a defined formal potential window 
Geoalkalibacter 
subterraneus 
Biofilm on 
both sides
SCE as RE 
Temperature controlled system at 37°C 
Continuos stirring at 200 rpm 
Experimental conditions 
Data based on at least 2 independent biofilm replicates 
B. E. Logan, ChemSusChem, 2012, 5, 988-994 
RE 
CE 
WE1 WE2 
Insulator 
Insulator 
Active→│←Inactive Active→│←Inactive 
DSMZ 
culture 
48 h 3000 
Liquid 
culture 
rpm 
Half 
cell 
Graphite plate as 
Working electrode 
Pt grid as Counter electrode 
WE1 
WE2 
Top 
view 
Non conductive 
Non conductive 
Biofilm 
Biofilm 
Potentiostatic controlled half-cell: 
-Similar biological-environmental conditions for both 
electrodes 
-High reproducibility by maintaining one of the 
electrodes at a constant potential vs. reference electrode 
LaBelle,E. et al. Bioelectrochemical Systems. 2010
Results and discussion
Chronoamperometric formation of Geoalkalibacter biofilms 
WE1 WE2 
Biofilm on both electrodes 
RE 
CE 
WE1 WE2 
Insulator 
Insulator 
Non conductive 
Non conductive 
Biofilm 
Biofilm 
Active→│←Inactive Active→│←Inactive
Turnover cyclic voltammetry 
Independent replicate 
Exp. at 5.00 S/m 
Exp. at 1.00 S/m 
jmax 
decreases 
jmax 
Ef: -470 mv
Biofilm imaging 
using CLSM, 
PHLIP 
analysis… 
Franks, A. et al. ChemSusChem (2012) 
…and COMSOL 
WE2 
Thickness: 75 μm (± 7) 
Current: 2.60 A/m2 
(± 0.01) 
WE1 
Thickness: 71 μm (± 12) 
Current: 2.57 A/m2 
(± 0.07) 
3 
2 
1 
0 
3 
2 
1 
0 
j/ A m-2 j/ A m-2 
Active→│←Inactive 
CE 
Active→│←Inactive 
WE1 WE2 
current distribution by COMSOL
Conclusion 
Cronoamperometry Cyclic voltammetry CLSM COMSOL 
current production distribution, electron transfer and biofilm formation/structure 
WE j / A m-2 Ef/ mV Thickness/ μm j distribution 
1 2.6 -475 71 uniform 
2 2.5 -476 75 uniform 
Both sides of a planar electrode material do contribute to 
current production regardless the electrode side orientation
Pitch sessions S2-6, Poster PP-13, Today from 16 h, Room 1.7
Rémy Serge Eric Nicolas

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2EU-ISMET, Alessandro Carmona

  • 1. On the modeling of the surface area that actually contributes to the current density produced in microbial electrochemical systems Alessandro Carmona1, Rémy Lacroix2, Serge Da Silva2, Eric Trably1 and Nicolas Bernet1 1INRA, Laboratoire de Biotechnologie de l’Environnement, Narbonne, France, alessandro.carmona@supagro.inra.fr; 26T-MIC Ingénieries, Toulouse, France
  • 3. Overall view of bioelectrochemical systems Configuration of a BES: membrane specificity, type of catalysts at both electrodes, and the source of the reducing power Harnisch, F. et al., ChemSusChem. 2009; Franks, A.E. et al., Biofuels. 2010; Logan, B.E. et al., Environ. Sci. Technol. 2008 or or Anode Power supply Renewable energy Cathode C+ A-e- e- Catalysts at the Anode Microbially catalysed CO2 O2 H2O H+ Membrane specificity Rabaey, K. et al, Nat. Rev. Micro. 2010. 8(10): p. 706-716 Catalysts at the Cathode Product „electrochemical device that exploits living Product microbial cells for the bioelectrocatalysis of anodic-oxidation and/or cathodic-reduction reactions“ Harnisch F. et al. Chem. Asian J. 2012, 7, 466 – 475 e- Organics Chemially or catalysed H2 e- Electron acceptor Microbially catalysed Chemially catalysed or Electron acceptor C+ A-A-C+ C+ A-or or cation anion no membrane exchange membrane Power production Short circuit e- e-e-e- e-e- e- Reducing power
  • 4. Experimental approach in METS Operational parameters Electrochemistry CA, CV, EIS… Reactor design Microscopy Fingerprinting SEM, CLSM.. 16S rRNA Harnisch and Rabaey, ChemSusChem. 2012 pH T° OLR CE% HRT
  • 5. Electrodes in bioelectrochemical systems Carbon paper Graphite plate Carbon mesh Granular graphite Polycrystalline Carbon rod Carbon brush Carbon felt Reticulated vitrified carbon graphite Photographs taken from: Wei J. et al. Bioresour. Technol. 2011. 102: p. 9335–9344
  • 6. Current density in microbial BESs Modified from: Schröder, U., J. Solid State Electrochem. 2011 Chen, S. et al., Energy Environ Sci. 2012 Chen, S. et al., Energy Environ Sci. 2011 Zhao, Y. et al., Chem. Eur. J. 2010,
  • 7. What surface should be used to calculate current? in BESs!!! “Flat stainless steel has produced up to 20 A/m2…” “these data must be qualified because the 2 sides of the electrode were exposed to the (medium) solution while the current density was calculated with respect to 1 side only” Rimboud, M., Physical Chemistry Chemical Physics. 2014 e- e- e- e- “An example of poor design would be a cell with a plate working electrode with both sides active and a counter electrode facing only one surface” Drawn from: Pletcher, D., Royal society of chemistry. 2009 Potential distribution in mV at the surface of a ring-shaped WE using an 120 mV “The varying iR drops along the different current paths produce a nonuniform potential across the WE’s surface, and as a consequence there is a nonuniform current density on the WE’s surface. These effects can cause undesired side reactions or ineffective use of the total electrode area” Drawn from: Bard, A., Wiley. 2001 WE CE 125 33 25 75 45 85 63 95 113 unsymetrical CE Insulated Insulated mV mV Anode Cathode Reference electrode e.g., vs. Ag/AgCl
  • 8. Experimental approach Cronoamperometry Cyclic voltammetry CLSM COMSOL* current production distribution, electron transfer and biofilm formation/structure “COMSOL Multiphysics is an engineering simulation software that facilitates all steps of a computational modeling process; such as defining the geometry, surface meshing, specifying the physics, solving, and then visualizing the results” Dalak, E., M.Sc. Thesis. 2012 Do both sides of a planar electrode material contribute to electron transfer?
  • 10. Anode-respiring bacterium model Nanowire? NADH NAD+ NAD+ 2CO2 Geoalkalibacter subterraneus Electrons 8H+ Electrode Cytochrome pool? e- 8 e- 2H2O CH3COOH turnover Ef -365 mV Geoalkalibacter cell (5-6 μm) 0.0 -0.5 -1.0 Potential vs. SCE (V) at pH 7 non turnover Ef -428 mV CLSM confirmed a thick biofilm composed of several layers of metabolically active bacteria all over the electrode Electrons e- Conductive filaments? Electrode Single bacterial cells Biofilm thickness :76 μm Cyclic voltammetry indicates an direct electron transfer mechanism via a conduit with a defined formal potential window Geoalkalibacter subterraneus Biofilm on both sides
  • 11. SCE as RE Temperature controlled system at 37°C Continuos stirring at 200 rpm Experimental conditions Data based on at least 2 independent biofilm replicates B. E. Logan, ChemSusChem, 2012, 5, 988-994 RE CE WE1 WE2 Insulator Insulator Active→│←Inactive Active→│←Inactive DSMZ culture 48 h 3000 Liquid culture rpm Half cell Graphite plate as Working electrode Pt grid as Counter electrode WE1 WE2 Top view Non conductive Non conductive Biofilm Biofilm Potentiostatic controlled half-cell: -Similar biological-environmental conditions for both electrodes -High reproducibility by maintaining one of the electrodes at a constant potential vs. reference electrode LaBelle,E. et al. Bioelectrochemical Systems. 2010
  • 13. Chronoamperometric formation of Geoalkalibacter biofilms WE1 WE2 Biofilm on both electrodes RE CE WE1 WE2 Insulator Insulator Non conductive Non conductive Biofilm Biofilm Active→│←Inactive Active→│←Inactive
  • 14. Turnover cyclic voltammetry Independent replicate Exp. at 5.00 S/m Exp. at 1.00 S/m jmax decreases jmax Ef: -470 mv
  • 15. Biofilm imaging using CLSM, PHLIP analysis… Franks, A. et al. ChemSusChem (2012) …and COMSOL WE2 Thickness: 75 μm (± 7) Current: 2.60 A/m2 (± 0.01) WE1 Thickness: 71 μm (± 12) Current: 2.57 A/m2 (± 0.07) 3 2 1 0 3 2 1 0 j/ A m-2 j/ A m-2 Active→│←Inactive CE Active→│←Inactive WE1 WE2 current distribution by COMSOL
  • 16. Conclusion Cronoamperometry Cyclic voltammetry CLSM COMSOL current production distribution, electron transfer and biofilm formation/structure WE j / A m-2 Ef/ mV Thickness/ μm j distribution 1 2.6 -475 71 uniform 2 2.5 -476 75 uniform Both sides of a planar electrode material do contribute to current production regardless the electrode side orientation
  • 17. Pitch sessions S2-6, Poster PP-13, Today from 16 h, Room 1.7
  • 18. Rémy Serge Eric Nicolas

Editor's Notes

  1. In BESs, a plenitude of possible applications can be found (Fig. 1-6), from the original and promising production of electricity (Logan, et al., 2006), to hydrogen as a clean fuel (Logan, et al., 2008) and the production of useful chemicals (Rabaey and Rozendal, 2010) such as hydrogen peroxide, extraordinarily from wastewater (Fu, et al., 2010, You , et al., 2010). Nonetheless, the cited applications in this section would not be possible without the basic research on the microbe-electrode interactions which inexorably turn out to contribute to the betterment of the overall performance of this kind of systems by eliminating (or at least diminishing) electrochemical losses of BESs (Schröder and Harnisch, 2010). Therefore, the analysis of the microbe-electrode interactions would lead not only to a higher comprehension on improving the overall performance of BESs (see section 1.5) from the power production point of view but also on improving a more precise electron uptake by microorganisms for the production of useful and industrial demanded biochemicals (Nevin, et al., 2010, Ross, et al., 2011). As shown in Fig. 1-6, microbial-electrode interactions can take place in both electrode chambers depending on the application for which the BES has been designed. A simplified version of a BES system as shown in the insert of Fig. 1-6 is a potentiostatic controlled electrochemical half-cell in which an anode and a cathode are hosted within one vessel (LaBelle, et al., 2010). This experimental approach assures similar biological and environmental conditions for both electrodes and increases the reproducibility of the experiment by maintaining one of the electrodes at a constant potential permanently controlled against a reference electrode (e.g., vs. Ag/AgCl) (Bard, et al., 2008). This type of BES (with multiple modifications) is the one that has been extensively used in this Thesis.
  2. Sad bacteria: http://www.clipartof.com/gallery/clipart/germ.html
  3. As one can see from the literature (Schröder, 2011), one of the motivations for the development of the BES technology has been a competitive “race” to increase the current production and trying to make this technology an affordable option for the treatment of wastewater with the concomitant consequence production of sustainable electricity and biochemicals (Rabaey and Rozendal, 2010). Here, the understanding of microbial-electrode interactions has been part of the global effort to accomplish BESs with an enhanced performance. Current density based on available anode surface area has made a noticeable development (Fig 1-7). Since 1999, the experimental biotransformation of substrate (fuel) to electric energy (Schröder, 2007) has been performed with the utilization of dissimilatory metal reducing bacteria (e.g., from the Shewanellaceae family (Kim, et al., 1999b, Kim, et al., 1999d)). The performance of the current density production has seen a considerable increment from only 0.013 μA cm-2 (Kim, et al., 1999d) to more than 30 A m-2 (see Chapter 5 and 6). The betterment of performance of BESs based on the current density is (among other factors) due to: i. the fabrication of porous three dimensional materials that allow bacteria to take advantage of higher electrode surface areas to release electrons (Katuri, et al., 2011, Šefčovičová, et al., 2011, Xie, et al., 2011, Yu, et al., 2011) (see Chapter 5 and 6); ii. the comprehension of how electrochemically active bacteria associate with some electrode materials through improved anode enrichment processes (Kim, et al., 2004, Liu, et al., 2008, Rabaey, et al., 2004); and iii. through the study of the process of biofilm formation influenced by environmental factors (see Chapter 7 and 8).
  4. As one can see from the literature (Schröder, 2011), one of the motivations for the development of the BES technology has been a competitive “race” to increase the current production and trying to make this technology an affordable option for the treatment of wastewater with the concomitant consequence production of sustainable electricity and biochemicals (Rabaey and Rozendal, 2010). Here, the understanding of microbial-electrode interactions has been part of the global effort to accomplish BESs with an enhanced performance. Current density based on available anode surface area has made a noticeable development (Fig 1-7). Since 1999, the experimental biotransformation of substrate (fuel) to electric energy (Schröder, 2007) has been performed with the utilization of dissimilatory metal reducing bacteria (e.g., from the Shewanellaceae family (Kim, et al., 1999b, Kim, et al., 1999d)). The performance of the current density production has seen a considerable increment from only 0.013 μA cm-2 (Kim, et al., 1999d) to more than 30 A m-2 (see Chapter 5 and 6). The betterment of performance of BESs based on the current density is (among other factors) due to: i. the fabrication of porous three dimensional materials that allow bacteria to take advantage of higher electrode surface areas to release electrons (Katuri, et al., 2011, Šefčovičová, et al., 2011, Xie, et al., 2011, Yu, et al., 2011) (see Chapter 5 and 6); ii. the comprehension of how electrochemically active bacteria associate with some electrode materials through improved anode enrichment processes (Kim, et al., 2004, Liu, et al., 2008, Rabaey, et al., 2004); and iii. through the study of the process of biofilm formation influenced by environmental factors (see Chapter 7 and 8).
  5. Sad bacteria: http://www.clipartof.com/gallery/clipart/germ.html
  6. How can we go from the concept of a normal microorganism to a so called Electrochemically active bacteria? -In the environment electrochemically active bacteria (EAB) can transfer electrons to solid terminal electron acceptors such as Fe(III), Mn(III) or Cr(VI). -In a Bioelectrochemical system such as microbial fuel cells (MFCs) these bacteria transfer the electrons to carbon materials for example. These bacteria not only play a key role in nature’s oxidation-reduction cycles but also are the key component of microbial bioelectrochemical systems (BES). Thus, the elucidation of the different microbial electron transfer pathways is of fundamental interest as well as technological relevance. For the family of Shewanellaceae – all being considered to be facultative anaerobes - several members have been studied on their extra-cellular electron transfer behavior. Most prominently S. oneidensis MR-1 was widely studied, e.g.: [28-31], but also S. putrefaciens [32-37], S. loihica [32, 38-41], S. decolorationis [42, 43], S. japonica [44], S. frigidimarina [45, 46] and S. marisflavi [47]. Commonly, it is assumed that the two decaheme c-type cytochromes MtrC and OmcA, both facing the extracellular environment, play a key role in the direct electron transfer mechanism (DET) [28, 48-52]. Thereby, MtrC and OmcA, are part of a complex transmembrane cytochrome pool involving more than 40 proteins [53]. The MET of Shewanellaceae usually exploits flavins, like riboflavin [54] and flavinmononucleotide (FMN) [44, 55] and their derivatives, and is considered to depend on intracellular electron transfer to the redox-shuttle as well as extracellular electron transfer by MtrC or OmcA, e.g. [44, 56, 57]. Thereby it has been shown that some strains of Shewanella family (e.g. S. oneidenis (Marsili et al., 2008; Jiao et al., 2011), S. loihica (Newton et al., 2009), S. baltica (von Canstein et al., 2007), S. frigidimarina (von Canstein et al., 2007) and S. decoloratioans (Li et al., 2010)) can biosynthesize the mediators required for MET for aerobic as well as anaerobic conditions. However, the ability to synthesize suitable amounts of these electron shuttles (especially for anaerobic conditions, where energy for biosynthesis is limited) is not univocal for all Shewanella species (e.g. [54]).
  7. Sad bacteria: http://www.clipartof.com/gallery/clipart/germ.html