SlideShare a Scribd company logo
1 of 17
Disambiguating proteins, genes, and RNA in text: a machine learning approach Vasileios Hatzivassiloglou, Pablo A. Dubou é , Andrey Rzhetsky Bioinformatics  17 (suppl. 1), S97-S106, 2001 Summarized by  Jeong -Ho Chang
Introduction ,[object Object],[object Object],[object Object],[object Object],[object Object]
GeneWays http://genome6. cpmc . columbia . edu /~ krautham / geneways /
Disambiguation ,[object Object],[object Object],[object Object],[object Object],[object Object]
Overall Description of Methods ,[object Object],[object Object],[object Object],[object Object]
Data Preparation (1/4) ,[object Object],[object Object],[object Object],[object Object]
Data Preparation (2/4) ,[object Object]
Data Preparation (3/4) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Data Preparation (4/4) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Data Representations ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Learning Methods ,[object Object],[object Object],[object Object],[object Object],[object Object]
Experiments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Results and Evaluation (1/4) ,[object Object],[object Object],[object Object],[object Object]
Results and Evaluation (2/4) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Results and Evaluation (3/4) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Results and Evaluation (4/4) ,[object Object],[object Object]
Conclusion ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

More Related Content

What's hot

Creating a Kinship Matrix Using MSA
Creating a Kinship Matrix Using MSACreating a Kinship Matrix Using MSA
Creating a Kinship Matrix Using MSA
heathermerk
 
MLconf NYC Chang Wang
MLconf NYC Chang Wang MLconf NYC Chang Wang
MLconf NYC Chang Wang
MLconf
 
Survey and Evaluation of Methods for Tissue Classification
Survey and Evaluation of Methods for Tissue ClassificationSurvey and Evaluation of Methods for Tissue Classification
Survey and Evaluation of Methods for Tissue Classification
perfj
 

What's hot (17)

SEQUENCE ANALYSIS
SEQUENCE ANALYSISSEQUENCE ANALYSIS
SEQUENCE ANALYSIS
 
Sequence alignment
Sequence alignmentSequence alignment
Sequence alignment
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Bioinformatics
BioinformaticsBioinformatics
Bioinformatics
 
STRING: Protein association networks
STRING: Protein association networksSTRING: Protein association networks
STRING: Protein association networks
 
STRING: protein association networks
STRING: protein association networksSTRING: protein association networks
STRING: protein association networks
 
philogenetic tree
philogenetic treephilogenetic tree
philogenetic tree
 
Sequence Analysis
Sequence AnalysisSequence Analysis
Sequence Analysis
 
Creating a Kinship Matrix Using MSA
Creating a Kinship Matrix Using MSACreating a Kinship Matrix Using MSA
Creating a Kinship Matrix Using MSA
 
Bioinformatics
BioinformaticsBioinformatics
Bioinformatics
 
Gene Selection for Sample Classification in Microarray: Clustering Based Method
Gene Selection for Sample Classification in Microarray: Clustering Based MethodGene Selection for Sample Classification in Microarray: Clustering Based Method
Gene Selection for Sample Classification in Microarray: Clustering Based Method
 
MLconf NYC Chang Wang
MLconf NYC Chang Wang MLconf NYC Chang Wang
MLconf NYC Chang Wang
 
Survey and Evaluation of Methods for Tissue Classification
Survey and Evaluation of Methods for Tissue ClassificationSurvey and Evaluation of Methods for Tissue Classification
Survey and Evaluation of Methods for Tissue Classification
 
Essential Biology 04.4 Genetic Engineering & Biotechnology
Essential Biology 04.4 Genetic Engineering & BiotechnologyEssential Biology 04.4 Genetic Engineering & Biotechnology
Essential Biology 04.4 Genetic Engineering & Biotechnology
 
Validation of homology modeling
Validation of homology modelingValidation of homology modeling
Validation of homology modeling
 
Gene expression profiling ii
Gene expression profiling  iiGene expression profiling  ii
Gene expression profiling ii
 
Bioc strucvariant seattle_11_09
Bioc strucvariant seattle_11_09Bioc strucvariant seattle_11_09
Bioc strucvariant seattle_11_09
 

Viewers also liked

Teacher Profiles 2010 - Berks Career and Technology Center
Teacher Profiles 2010 - Berks Career and Technology CenterTeacher Profiles 2010 - Berks Career and Technology Center
Teacher Profiles 2010 - Berks Career and Technology Center
butest
 
Just Enough Web Design.doc.doc
Just Enough Web Design.doc.docJust Enough Web Design.doc.doc
Just Enough Web Design.doc.doc
butest
 
Machine Learning, LIX004M5
Machine Learning, LIX004M5Machine Learning, LIX004M5
Machine Learning, LIX004M5
butest
 
Learning for Optimization: EDAs, probabilistic modelling, or ...
Learning for Optimization: EDAs, probabilistic modelling, or ...Learning for Optimization: EDAs, probabilistic modelling, or ...
Learning for Optimization: EDAs, probabilistic modelling, or ...
butest
 
web design
web designweb design
web design
butest
 
2007bai7604.doc.doc
2007bai7604.doc.doc2007bai7604.doc.doc
2007bai7604.doc.doc
butest
 
mod_02_intro_ml.ppt
mod_02_intro_ml.pptmod_02_intro_ml.ppt
mod_02_intro_ml.ppt
butest
 
report2.doc
report2.docreport2.doc
report2.doc
butest
 
Table of Contents
Table of ContentsTable of Contents
Table of Contents
butest
 
Flexible and efficient Gaussian process models for machine ...
Flexible and efficient Gaussian process models for machine ...Flexible and efficient Gaussian process models for machine ...
Flexible and efficient Gaussian process models for machine ...
butest
 
Hibridization of Reinforcement Learning Agents
Hibridization of Reinforcement Learning AgentsHibridization of Reinforcement Learning Agents
Hibridization of Reinforcement Learning Agents
butest
 
Part XIV
Part XIVPart XIV
Part XIV
butest
 
Mahesh Joshi
Mahesh JoshiMahesh Joshi
Mahesh Joshi
butest
 
datafountainssurvey.doc
datafountainssurvey.docdatafountainssurvey.doc
datafountainssurvey.doc
butest
 
Use of data mining techniques in the discovery of spatial and ...
Use of data mining techniques in the discovery of spatial and ...Use of data mining techniques in the discovery of spatial and ...
Use of data mining techniques in the discovery of spatial and ...
butest
 
Introduction to Machine Learning* Prof. D. Spears
Introduction to Machine Learning* Prof. D. SpearsIntroduction to Machine Learning* Prof. D. Spears
Introduction to Machine Learning* Prof. D. Spears
butest
 
Machine Learning
Machine LearningMachine Learning
Machine Learning
butest
 
lec21.ppt
lec21.pptlec21.ppt
lec21.ppt
butest
 

Viewers also liked (20)

Teacher Profiles 2010 - Berks Career and Technology Center
Teacher Profiles 2010 - Berks Career and Technology CenterTeacher Profiles 2010 - Berks Career and Technology Center
Teacher Profiles 2010 - Berks Career and Technology Center
 
Just Enough Web Design.doc.doc
Just Enough Web Design.doc.docJust Enough Web Design.doc.doc
Just Enough Web Design.doc.doc
 
Machine Learning, LIX004M5
Machine Learning, LIX004M5Machine Learning, LIX004M5
Machine Learning, LIX004M5
 
Learning for Optimization: EDAs, probabilistic modelling, or ...
Learning for Optimization: EDAs, probabilistic modelling, or ...Learning for Optimization: EDAs, probabilistic modelling, or ...
Learning for Optimization: EDAs, probabilistic modelling, or ...
 
web design
web designweb design
web design
 
2007bai7604.doc.doc
2007bai7604.doc.doc2007bai7604.doc.doc
2007bai7604.doc.doc
 
mod_02_intro_ml.ppt
mod_02_intro_ml.pptmod_02_intro_ml.ppt
mod_02_intro_ml.ppt
 
report2.doc
report2.docreport2.doc
report2.doc
 
Table of Contents
Table of ContentsTable of Contents
Table of Contents
 
[ppt]
[ppt][ppt]
[ppt]
 
Osteo Intraorganelle Nanoporation under Electrical Stimuli
Osteo Intraorganelle Nanoporation under Electrical StimuliOsteo Intraorganelle Nanoporation under Electrical Stimuli
Osteo Intraorganelle Nanoporation under Electrical Stimuli
 
Flexible and efficient Gaussian process models for machine ...
Flexible and efficient Gaussian process models for machine ...Flexible and efficient Gaussian process models for machine ...
Flexible and efficient Gaussian process models for machine ...
 
Hibridization of Reinforcement Learning Agents
Hibridization of Reinforcement Learning AgentsHibridization of Reinforcement Learning Agents
Hibridization of Reinforcement Learning Agents
 
Part XIV
Part XIVPart XIV
Part XIV
 
Mahesh Joshi
Mahesh JoshiMahesh Joshi
Mahesh Joshi
 
datafountainssurvey.doc
datafountainssurvey.docdatafountainssurvey.doc
datafountainssurvey.doc
 
Use of data mining techniques in the discovery of spatial and ...
Use of data mining techniques in the discovery of spatial and ...Use of data mining techniques in the discovery of spatial and ...
Use of data mining techniques in the discovery of spatial and ...
 
Introduction to Machine Learning* Prof. D. Spears
Introduction to Machine Learning* Prof. D. SpearsIntroduction to Machine Learning* Prof. D. Spears
Introduction to Machine Learning* Prof. D. Spears
 
Machine Learning
Machine LearningMachine Learning
Machine Learning
 
lec21.ppt
lec21.pptlec21.ppt
lec21.ppt
 

Similar to PPT

Blast bioinformatics
Blast bioinformaticsBlast bioinformatics
Blast bioinformatics
atmapandey
 
Automatic Parallelization for Parallel Architectures Using Smith Waterman Alg...
Automatic Parallelization for Parallel Architectures Using Smith Waterman Alg...Automatic Parallelization for Parallel Architectures Using Smith Waterman Alg...
Automatic Parallelization for Parallel Architectures Using Smith Waterman Alg...
International Journal of Engineering Inventions www.ijeijournal.com
 
Internship Report
Internship ReportInternship Report
Internship Report
Neha Gupta
 
Presentation material
Presentation materialPresentation material
Presentation material
butest
 

Similar to PPT (20)

Utilizing literature for biological discovery
Utilizing literature for biological discoveryUtilizing literature for biological discovery
Utilizing literature for biological discovery
 
Biomedical literature mining
Biomedical literature miningBiomedical literature mining
Biomedical literature mining
 
Prediction of protein function
Prediction of protein functionPrediction of protein function
Prediction of protein function
 
Dictionary Based Approaches in Protein Name Recognition
Dictionary Based Approaches in Protein Name RecognitionDictionary Based Approaches in Protein Name Recognition
Dictionary Based Approaches in Protein Name Recognition
 
Blast bioinformatics
Blast bioinformaticsBlast bioinformatics
Blast bioinformatics
 
Bioinformatica 08-12-2011-t8-go-hmm
Bioinformatica 08-12-2011-t8-go-hmmBioinformatica 08-12-2011-t8-go-hmm
Bioinformatica 08-12-2011-t8-go-hmm
 
3302 3305
3302 33053302 3305
3302 3305
 
Introduction to BioNLP and its applications
Introduction to BioNLP and its applicationsIntroduction to BioNLP and its applications
Introduction to BioNLP and its applications
 
Text Mining for Biocuration of Bacterial Infectious Diseases
Text Mining for Biocuration of Bacterial Infectious DiseasesText Mining for Biocuration of Bacterial Infectious Diseases
Text Mining for Biocuration of Bacterial Infectious Diseases
 
Particle Swarm Optimization for Gene cluster Identification
Particle Swarm Optimization for Gene cluster IdentificationParticle Swarm Optimization for Gene cluster Identification
Particle Swarm Optimization for Gene cluster Identification
 
Automatic Parallelization for Parallel Architectures Using Smith Waterman Alg...
Automatic Parallelization for Parallel Architectures Using Smith Waterman Alg...Automatic Parallelization for Parallel Architectures Using Smith Waterman Alg...
Automatic Parallelization for Parallel Architectures Using Smith Waterman Alg...
 
Internship Report
Internship ReportInternship Report
Internship Report
 
Softwares For Phylogentic Analysis
Softwares For Phylogentic AnalysisSoftwares For Phylogentic Analysis
Softwares For Phylogentic Analysis
 
An Agent-Based System For Re-Annotation Of Genomes
An Agent-Based System For Re-Annotation Of GenomesAn Agent-Based System For Re-Annotation Of Genomes
An Agent-Based System For Re-Annotation Of Genomes
 
Presentation material
Presentation materialPresentation material
Presentation material
 
Bioinformatic, and tools by kk sahu
Bioinformatic, and tools by kk sahuBioinformatic, and tools by kk sahu
Bioinformatic, and tools by kk sahu
 
BiDiBlast Tool Presentation
BiDiBlast Tool PresentationBiDiBlast Tool Presentation
BiDiBlast Tool Presentation
 
Performance Improvement of BLAST with Use of MSA Techniques to Search Ancesto...
Performance Improvement of BLAST with Use of MSA Techniques to Search Ancesto...Performance Improvement of BLAST with Use of MSA Techniques to Search Ancesto...
Performance Improvement of BLAST with Use of MSA Techniques to Search Ancesto...
 
Performance Improvement of BLAST with Use of MSA Techniques to Search Ancesto...
Performance Improvement of BLAST with Use of MSA Techniques to Search Ancesto...Performance Improvement of BLAST with Use of MSA Techniques to Search Ancesto...
Performance Improvement of BLAST with Use of MSA Techniques to Search Ancesto...
 
2019 Triangle Machine Learning Day - Transfer Learning for Molecular Property...
2019 Triangle Machine Learning Day - Transfer Learning for Molecular Property...2019 Triangle Machine Learning Day - Transfer Learning for Molecular Property...
2019 Triangle Machine Learning Day - Transfer Learning for Molecular Property...
 

More from butest

EL MODELO DE NEGOCIO DE YOUTUBE
EL MODELO DE NEGOCIO DE YOUTUBEEL MODELO DE NEGOCIO DE YOUTUBE
EL MODELO DE NEGOCIO DE YOUTUBE
butest
 
1. MPEG I.B.P frame之不同
1. MPEG I.B.P frame之不同1. MPEG I.B.P frame之不同
1. MPEG I.B.P frame之不同
butest
 
LESSONS FROM THE MICHAEL JACKSON TRIAL
LESSONS FROM THE MICHAEL JACKSON TRIALLESSONS FROM THE MICHAEL JACKSON TRIAL
LESSONS FROM THE MICHAEL JACKSON TRIAL
butest
 
Timeline: The Life of Michael Jackson
Timeline: The Life of Michael JacksonTimeline: The Life of Michael Jackson
Timeline: The Life of Michael Jackson
butest
 
Popular Reading Last Updated April 1, 2010 Adams, Lorraine The ...
Popular Reading Last Updated April 1, 2010 Adams, Lorraine The ...Popular Reading Last Updated April 1, 2010 Adams, Lorraine The ...
Popular Reading Last Updated April 1, 2010 Adams, Lorraine The ...
butest
 
LESSONS FROM THE MICHAEL JACKSON TRIAL
LESSONS FROM THE MICHAEL JACKSON TRIALLESSONS FROM THE MICHAEL JACKSON TRIAL
LESSONS FROM THE MICHAEL JACKSON TRIAL
butest
 
Com 380, Summer II
Com 380, Summer IICom 380, Summer II
Com 380, Summer II
butest
 
The MYnstrel Free Press Volume 2: Economic Struggles, Meet Jazz
The MYnstrel Free Press Volume 2: Economic Struggles, Meet JazzThe MYnstrel Free Press Volume 2: Economic Struggles, Meet Jazz
The MYnstrel Free Press Volume 2: Economic Struggles, Meet Jazz
butest
 
MICHAEL JACKSON.doc
MICHAEL JACKSON.docMICHAEL JACKSON.doc
MICHAEL JACKSON.doc
butest
 
Social Networks: Twitter Facebook SL - Slide 1
Social Networks: Twitter Facebook SL - Slide 1Social Networks: Twitter Facebook SL - Slide 1
Social Networks: Twitter Facebook SL - Slide 1
butest
 
Facebook
Facebook Facebook
Facebook
butest
 
Executive Summary Hare Chevrolet is a General Motors dealership ...
Executive Summary Hare Chevrolet is a General Motors dealership ...Executive Summary Hare Chevrolet is a General Motors dealership ...
Executive Summary Hare Chevrolet is a General Motors dealership ...
butest
 
Welcome to the Dougherty County Public Library's Facebook and ...
Welcome to the Dougherty County Public Library's Facebook and ...Welcome to the Dougherty County Public Library's Facebook and ...
Welcome to the Dougherty County Public Library's Facebook and ...
butest
 
NEWS ANNOUNCEMENT
NEWS ANNOUNCEMENTNEWS ANNOUNCEMENT
NEWS ANNOUNCEMENT
butest
 
C-2100 Ultra Zoom.doc
C-2100 Ultra Zoom.docC-2100 Ultra Zoom.doc
C-2100 Ultra Zoom.doc
butest
 
MAC Printing on ITS Printers.doc.doc
MAC Printing on ITS Printers.doc.docMAC Printing on ITS Printers.doc.doc
MAC Printing on ITS Printers.doc.doc
butest
 
Mac OS X Guide.doc
Mac OS X Guide.docMac OS X Guide.doc
Mac OS X Guide.doc
butest
 
WEB DESIGN!
WEB DESIGN!WEB DESIGN!
WEB DESIGN!
butest
 

More from butest (20)

EL MODELO DE NEGOCIO DE YOUTUBE
EL MODELO DE NEGOCIO DE YOUTUBEEL MODELO DE NEGOCIO DE YOUTUBE
EL MODELO DE NEGOCIO DE YOUTUBE
 
1. MPEG I.B.P frame之不同
1. MPEG I.B.P frame之不同1. MPEG I.B.P frame之不同
1. MPEG I.B.P frame之不同
 
LESSONS FROM THE MICHAEL JACKSON TRIAL
LESSONS FROM THE MICHAEL JACKSON TRIALLESSONS FROM THE MICHAEL JACKSON TRIAL
LESSONS FROM THE MICHAEL JACKSON TRIAL
 
Timeline: The Life of Michael Jackson
Timeline: The Life of Michael JacksonTimeline: The Life of Michael Jackson
Timeline: The Life of Michael Jackson
 
Popular Reading Last Updated April 1, 2010 Adams, Lorraine The ...
Popular Reading Last Updated April 1, 2010 Adams, Lorraine The ...Popular Reading Last Updated April 1, 2010 Adams, Lorraine The ...
Popular Reading Last Updated April 1, 2010 Adams, Lorraine The ...
 
LESSONS FROM THE MICHAEL JACKSON TRIAL
LESSONS FROM THE MICHAEL JACKSON TRIALLESSONS FROM THE MICHAEL JACKSON TRIAL
LESSONS FROM THE MICHAEL JACKSON TRIAL
 
Com 380, Summer II
Com 380, Summer IICom 380, Summer II
Com 380, Summer II
 
PPT
PPTPPT
PPT
 
The MYnstrel Free Press Volume 2: Economic Struggles, Meet Jazz
The MYnstrel Free Press Volume 2: Economic Struggles, Meet JazzThe MYnstrel Free Press Volume 2: Economic Struggles, Meet Jazz
The MYnstrel Free Press Volume 2: Economic Struggles, Meet Jazz
 
MICHAEL JACKSON.doc
MICHAEL JACKSON.docMICHAEL JACKSON.doc
MICHAEL JACKSON.doc
 
Social Networks: Twitter Facebook SL - Slide 1
Social Networks: Twitter Facebook SL - Slide 1Social Networks: Twitter Facebook SL - Slide 1
Social Networks: Twitter Facebook SL - Slide 1
 
Facebook
Facebook Facebook
Facebook
 
Executive Summary Hare Chevrolet is a General Motors dealership ...
Executive Summary Hare Chevrolet is a General Motors dealership ...Executive Summary Hare Chevrolet is a General Motors dealership ...
Executive Summary Hare Chevrolet is a General Motors dealership ...
 
Welcome to the Dougherty County Public Library's Facebook and ...
Welcome to the Dougherty County Public Library's Facebook and ...Welcome to the Dougherty County Public Library's Facebook and ...
Welcome to the Dougherty County Public Library's Facebook and ...
 
NEWS ANNOUNCEMENT
NEWS ANNOUNCEMENTNEWS ANNOUNCEMENT
NEWS ANNOUNCEMENT
 
C-2100 Ultra Zoom.doc
C-2100 Ultra Zoom.docC-2100 Ultra Zoom.doc
C-2100 Ultra Zoom.doc
 
MAC Printing on ITS Printers.doc.doc
MAC Printing on ITS Printers.doc.docMAC Printing on ITS Printers.doc.doc
MAC Printing on ITS Printers.doc.doc
 
Mac OS X Guide.doc
Mac OS X Guide.docMac OS X Guide.doc
Mac OS X Guide.doc
 
hier
hierhier
hier
 
WEB DESIGN!
WEB DESIGN!WEB DESIGN!
WEB DESIGN!
 

PPT

  • 1. Disambiguating proteins, genes, and RNA in text: a machine learning approach Vasileios Hatzivassiloglou, Pablo A. Dubou é , Andrey Rzhetsky Bioinformatics 17 (suppl. 1), S97-S106, 2001 Summarized by Jeong -Ho Chang
  • 2.
  • 3. GeneWays http://genome6. cpmc . columbia . edu /~ krautham / geneways /
  • 4.
  • 5.
  • 6.
  • 7.
  • 8.
  • 9.
  • 10.
  • 11.
  • 12.
  • 13.
  • 14.
  • 15.
  • 16.
  • 17.