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Better Models. Better Results™


Genetic Modification for Better
       Disease Models™




                                                      1
              © Transposagen Biopharmaceutics, Inc.
About Us
                                                       Transposagen Biopharmaceuticals, Inc., is
Technologies:                                          dedicated to providing better disease
                                                       models through genetic modification.
• piggyBac™                                            Transposagen specializes in custom and off
•XTN™ TAL Target-Specific                              the shelf XTN™ TAL Nucleases, animal
                                                       models, cell lines, stem cells and cutting-
Nucleases                                              edge research tools and technologies to
•Rodent Stem Cells                                     improve drug discovery and development
                                                       research. These unique technologies and
                                                       services for genetic modification give
Applications:                                          customers and technology users access to
•Rodent Model Creation                                 any genetic modification in any gene in any
                                                       genome for both research and biologic
•Cell Line Engineering & Stem                          production purposes.
Cells
•Genetically Engineered Plants
•Biologics Production
•Therapeutics
                            © Transposagen Biopharmaceutics, Inc.
piggyBac Site Specific Genetic Engineering
• Not limited to TTAA sites
• Xanthamonas TAL nuclease (XTN: a.k.a TALENs)
• TAL DNA binding modules and FokI DNA-cleavage
    domain
•   Site specific knockout, knock-in of any gene, any
    genome
•   Automated synthesis of XTNs
•   Remove transposon after gene editing



                      © Transposagen Biopharmaceutics, Inc.
XTN™ TAL Nuclease KO Efficiency
• Rag1 XTN target site amplified, cloned and sequenced
• 16% disruption at the target site: better than Zinc-finger Nuclease and
  Meganuclease
• Disruption sequences are shown below with XTN target site highlighted
  in grey




                            © Transposagen Biopharmaceutics, Inc.
Site Specific Knock-in
A. Site specific binding and induced dsDNA breaks
B. Transfect SSCs
C. Nested PCR confirmation of Homologous Recombination events




                          © Transposagen Biopharmaceutics, Inc.
The piggyBac™ Transposon System

                        Key Features
                        •Efficient transgenesis using transfection
                        •Titratable number of integrations
                        •Large cargo limit – 10 to 100kb
                        •Rapid identification of integration site
                        •Reversible transposition – no footprint
                        •All-in-one inducible vector
                        •Safe non-viral system




             © Transposagen Biopharmaceutics, Inc.
piggyBac vs. Viral Vectors
  Characteristic                                                                  Viral Vectors                             piggyBac
  Safety                                                                                    X                                    
  Induced Immune Response                                                                   X                                    
  Oncogene Activation                                                                       X                                    
  Production Costs                                                                          X                                    
  Cargo Capacity                                                                            X                                    
                                                                            Cargo Capacity (kb)

  Adenoassociated Virus

             Retrovirus

             Lentivirus

              piggyBac
                            1     2     3     4     5     6      7     8     9    10   11   12    13   14   15   16   17   18   19   20
                          Source: Current Gene Therapy (2004), 4, 357-372                                                                 120 kb
• Cargo capacity greater than 120 kb
• Delivery of entire BACs reported

                                                          © Transposagen Biopharmaceutics, Inc.
piggyBac™ Cumate Inducible Switch
Titratable and can turn back off easily




                   © Transposagen Biopharmaceutics, Inc.
Reversible Transposition
Pop-out the transposon




                  © Transposagen Biopharmaceutics, Inc.
Targeted Integration and Excision




• Gene Therapy
• Cell Lines
Animal Models
Therapeutics
Cell Lines       Bradley et al Nature (2011) In Press




                            © Transposagen Biopharmaceutics, Inc.
Therapeutic Applications

• Gene and Cell Therapy
• Immunotherapy
  PB kills ovarian cancer cells of tumor xenografts in mice




PB/TK cells stained red   Apoptotic cells stain green                Merged cells are yellow




                             © Transposagen Biopharmaceutics, Inc.
Animal Models
• Knockout                                  • Knock-in
• Transgenic                                • Transgenic knockdown
    Overexpression                          • Humanized
•   Conditional




          Rat and mouse models available
          Any species possible
                     © Transposagen Biopharmaceutics, Inc.
Creation of Animal Models using SSCs




Figures Courtesy of Dr. Kent Hamra


                              © Transposagen Biopharmaceutics, Inc.
Genetic Modification Technology Comparison
Primary            Virus     ZFN & HR                          Plasmid   piggyBac & XTN
Technology
High Efficiency    Yes       No                                No        Yes

Non-viral safety   No        Yes                               Yes       Yes

Integration        No        Yes                               No        Yes
control
Unlimited DNA      No        No                                No        Yes
Cargo size
Reversible         No        No                                No        Yes
footprint free
Site specific      No        Yes                               No        Yes
gene editing
Cell lines and     Yes       Yes                               No        Yes
Animal Models
Licensing          No        Yes                               No        No
restrictions

                           © Transposagen Biopharmaceutics, Inc.
Custom Services Overview
• Gene editing with XTNs (talens), HR vector, piggyBac Transposon
    Site specific knockout, knock-in, edit and correction of any gene in
     any genome
• Stable cell lines
    Overexpression, knockdown, reporter lines, iPS reprogramming, iPS
     and ES differentiation and selection, therapeutic applications
• Animal models
    Rat and mouse model generation available, additional species
     possible




                             © Transposagen Biopharmaceutics, Inc.
Contact Information




Jack Crawford, MS
Director, Business Development
jcrawford@transposagenbio.com




                         © Transposagen Biopharmaceutics, Inc.

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Transposagen Q3 2012 Overview

  • 1. Better Models. Better Results™ Genetic Modification for Better Disease Models™ 1 © Transposagen Biopharmaceutics, Inc.
  • 2. About Us Transposagen Biopharmaceuticals, Inc., is Technologies: dedicated to providing better disease models through genetic modification. • piggyBac™ Transposagen specializes in custom and off •XTN™ TAL Target-Specific the shelf XTN™ TAL Nucleases, animal models, cell lines, stem cells and cutting- Nucleases edge research tools and technologies to •Rodent Stem Cells improve drug discovery and development research. These unique technologies and services for genetic modification give Applications: customers and technology users access to •Rodent Model Creation any genetic modification in any gene in any genome for both research and biologic •Cell Line Engineering & Stem production purposes. Cells •Genetically Engineered Plants •Biologics Production •Therapeutics © Transposagen Biopharmaceutics, Inc.
  • 3. piggyBac Site Specific Genetic Engineering • Not limited to TTAA sites • Xanthamonas TAL nuclease (XTN: a.k.a TALENs) • TAL DNA binding modules and FokI DNA-cleavage domain • Site specific knockout, knock-in of any gene, any genome • Automated synthesis of XTNs • Remove transposon after gene editing © Transposagen Biopharmaceutics, Inc.
  • 4. XTN™ TAL Nuclease KO Efficiency • Rag1 XTN target site amplified, cloned and sequenced • 16% disruption at the target site: better than Zinc-finger Nuclease and Meganuclease • Disruption sequences are shown below with XTN target site highlighted in grey © Transposagen Biopharmaceutics, Inc.
  • 5. Site Specific Knock-in A. Site specific binding and induced dsDNA breaks B. Transfect SSCs C. Nested PCR confirmation of Homologous Recombination events © Transposagen Biopharmaceutics, Inc.
  • 6. The piggyBac™ Transposon System Key Features •Efficient transgenesis using transfection •Titratable number of integrations •Large cargo limit – 10 to 100kb •Rapid identification of integration site •Reversible transposition – no footprint •All-in-one inducible vector •Safe non-viral system © Transposagen Biopharmaceutics, Inc.
  • 7. piggyBac vs. Viral Vectors Characteristic Viral Vectors piggyBac Safety X  Induced Immune Response X  Oncogene Activation X  Production Costs X  Cargo Capacity X  Cargo Capacity (kb) Adenoassociated Virus Retrovirus Lentivirus piggyBac 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 Source: Current Gene Therapy (2004), 4, 357-372 120 kb • Cargo capacity greater than 120 kb • Delivery of entire BACs reported © Transposagen Biopharmaceutics, Inc.
  • 8. piggyBac™ Cumate Inducible Switch Titratable and can turn back off easily © Transposagen Biopharmaceutics, Inc.
  • 9. Reversible Transposition Pop-out the transposon © Transposagen Biopharmaceutics, Inc.
  • 10. Targeted Integration and Excision • Gene Therapy • Cell Lines Animal Models Therapeutics Cell Lines Bradley et al Nature (2011) In Press © Transposagen Biopharmaceutics, Inc.
  • 11. Therapeutic Applications • Gene and Cell Therapy • Immunotherapy PB kills ovarian cancer cells of tumor xenografts in mice PB/TK cells stained red Apoptotic cells stain green Merged cells are yellow © Transposagen Biopharmaceutics, Inc.
  • 12. Animal Models • Knockout • Knock-in • Transgenic • Transgenic knockdown Overexpression • Humanized • Conditional Rat and mouse models available Any species possible © Transposagen Biopharmaceutics, Inc.
  • 13. Creation of Animal Models using SSCs Figures Courtesy of Dr. Kent Hamra © Transposagen Biopharmaceutics, Inc.
  • 14. Genetic Modification Technology Comparison Primary Virus ZFN & HR Plasmid piggyBac & XTN Technology High Efficiency Yes No No Yes Non-viral safety No Yes Yes Yes Integration No Yes No Yes control Unlimited DNA No No No Yes Cargo size Reversible No No No Yes footprint free Site specific No Yes No Yes gene editing Cell lines and Yes Yes No Yes Animal Models Licensing No Yes No No restrictions © Transposagen Biopharmaceutics, Inc.
  • 15. Custom Services Overview • Gene editing with XTNs (talens), HR vector, piggyBac Transposon  Site specific knockout, knock-in, edit and correction of any gene in any genome • Stable cell lines  Overexpression, knockdown, reporter lines, iPS reprogramming, iPS and ES differentiation and selection, therapeutic applications • Animal models  Rat and mouse model generation available, additional species possible © Transposagen Biopharmaceutics, Inc.
  • 16. Contact Information Jack Crawford, MS Director, Business Development jcrawford@transposagenbio.com © Transposagen Biopharmaceutics, Inc.