Gene Cloning & Creating DNA Libraries
Gene Cloning What does the term cloning mean? What is gene cloning? How does it differ from cloning an entire organism? Wh...
Cloning - a definition From the Greek - klon, a twig An aggregate of the asexually produced progeny of an individual;a gro...
What is DNA cloning?   When DNA is extracted from an organism, all its genes are obtained In gene (DNA) cloning a particul...
Whole organisms are cloned too, but differently
Why Clone DNA? A particular gene can be isolated and its nucleotide sequence determined Control sequences of DNA can be id...
How is DNA cloned? DNA is extracted- here from blood  Restriction enzymes , e.g.  EcoR I,  Hind III, etc., cut the DNA int...
The action of a  restriction enzyme ,  EcoR I Note: EcoR I  gives a ‘sticky’ end
DNA Cloning, II Bacterial plasmids (small circular DNA additional to a bacteria’s regular DNA) are cut with the same restr...
DNA cloning, III The recombinant plasmids are then mixed with bacteria which have been treated to make them “ competent”, ...
DNA Cloning IV The plasmids have naturally occurring genes for  antibiotic resistance Bacteria containing plasmids with th...
Antibiotic Resistance The medium in this petri dish contains the antibiotic Kanamycin The bacteria on the right contain Ka...
Cloning V The transformed bacterial cells form colonies on the medium Each cell in a given colony has the same plasmid (&a...
Gene Libraries A gene library  is defined as “a collection of living bacterial colonies that have been transformed with di...
Screening I Screening can involve: Phenotypic screening- the protein encoded by the gene changes the colour of the colony ...
Screening II 3.  Detecting the DNA sequence of a cloned gene with a  probe  (DNA hybridization)
Screening III Once colonies are identified, they are cultured in broth to increase numbers and therefore the amount of DNA...
cDNA I Eukaryotic DNA differs from bacterial (prokaryotic) DNA in that it has  introns  ( in tervening sequences) and  exo...
A simplified diagram of transcription in eukaryotes hnRNA = ‘heterogenous nuclear’RNA in the process of being cut and spli...
cDNA II Bacteria can’t deal with introns, so in cases where a product (e.g. insulin) is to be expressed by the bacteria, a...
cDNA III To deal with this, special DNA is synthesized using mRNA as a template. This process also requires a primer and a...
Considerations The plasmids used in gene cloning contain naturally occurring genes for some type of antibiotic resistance-...
Considerations, ctd . There is a reluctance on the part of some cultures and individuals to accept the concept of transgen...
These points and others require research and  informed debate- What are  Your  thoughts? What legislation has been passed ...
References Kreuzer, H., Massey, A.,2001,  Recombinant DNA & Biotechnology , ASM Press, Washington Turner, P.C., et al,...
Picture Credits Cc the cat, slide 5 courtesy of Texas A & M University,  College of Veterinary Medicine Photos on slid...
Acknowledgements Thanks go to Craig Millar and Andrew Dodd, School of Biological Science,  University of Auckland Compiled...
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Gene cloning

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Gene cloning

  1. 1. Gene Cloning & Creating DNA Libraries
  2. 2. Gene Cloning What does the term cloning mean? What is gene cloning? How does it differ from cloning an entire organism? Why is gene cloning done? How is gene cloning accomplished ? What is a DNA ‘Library’? A cDNA Library? What are some of the ethical considerations regarding gene cloning?
  3. 3. Cloning - a definition From the Greek - klon, a twig An aggregate of the asexually produced progeny of an individual;a group of replicas of all or part of a macromolecule (such as DNA or an antibody) An individual grown from a single somatic cell of its parent & genetically identical to it www.m-w/cgi-bin/dictionary
  4. 4. What is DNA cloning? When DNA is extracted from an organism, all its genes are obtained In gene (DNA) cloning a particular gene is copied (cloned)
  5. 5. Whole organisms are cloned too, but differently
  6. 6. Why Clone DNA? A particular gene can be isolated and its nucleotide sequence determined Control sequences of DNA can be identified & analyzed Protein/enzyme/RNA function can be investigated Mutations can be identified, e.g. gene defects related to specific diseases Organisms can be ‘engineered’ for specific purposes, e.g. insulin production, insect resistance, etc.
  7. 7. How is DNA cloned? DNA is extracted- here from blood Restriction enzymes , e.g. EcoR I, Hind III, etc., cut the DNA into small pieces Different DNA pieces cut with the same enzyme can join, or recombine. Blood sample DNA Restriction enzymes
  8. 8. The action of a restriction enzyme , EcoR I Note: EcoR I gives a ‘sticky’ end
  9. 9. DNA Cloning, II Bacterial plasmids (small circular DNA additional to a bacteria’s regular DNA) are cut with the same restriction enzyme A chunk of DNA can thus be inserted into the plasmid DNA to form a “ recombinant ”
  10. 10. DNA cloning, III The recombinant plasmids are then mixed with bacteria which have been treated to make them “ competent”, or capable of taking in the plasmids This insertion is called transformation
  11. 11. DNA Cloning IV The plasmids have naturally occurring genes for antibiotic resistance Bacteria containing plasmids with these genes will grow on a medium containing the antibiotic- the others die, so only transformed bacteria survive
  12. 12. Antibiotic Resistance The medium in this petri dish contains the antibiotic Kanamycin The bacteria on the right contain Kan r , a plasmid that is resistant to Kanamycin, while the one on the left has no resistance Note the difference in growth
  13. 13. Cloning V The transformed bacterial cells form colonies on the medium Each cell in a given colony has the same plasmid (& the same DNA) Cells in different colonies have different plasmids (& different DNA fragments)
  14. 14. Gene Libraries A gene library is defined as “a collection of living bacterial colonies that have been transformed with different pieces of DNA from the organism that is the source of the gene of interest” The gene library then must be screened to find the colony with the gene in which the researchers are interested
  15. 15. Screening I Screening can involve: Phenotypic screening- the protein encoded by the gene changes the colour of the colony Using antibodies that recognize the protein produced by a particular gene
  16. 16. Screening II 3. Detecting the DNA sequence of a cloned gene with a probe (DNA hybridization)
  17. 17. Screening III Once colonies are identified, they are cultured in broth to increase numbers and therefore the amount of DNA Samples are also prepared for storage at -80 degrees. They can be kept for many years this way.
  18. 18. cDNA I Eukaryotic DNA differs from bacterial (prokaryotic) DNA in that it has introns ( in tervening sequences) and exons ( ex pressed or translated sequences). In order for a eukaryotic gene to be expressed, the introns are ‘edited’ out of mRNA after transcription
  19. 19. A simplified diagram of transcription in eukaryotes hnRNA = ‘heterogenous nuclear’RNA in the process of being cut and spliced into messenger RNA
  20. 20. cDNA II Bacteria can’t deal with introns, so in cases where a product (e.g. insulin) is to be expressed by the bacteria, an uninterrupted coding sequence is needed. Also, since introns can account for up to 90% of an eukaryotic gene, and cloning long fragments is difficult, it is sometimes desirable to work only with the expressed sequences (exons)
  21. 21. cDNA III To deal with this, special DNA is synthesized using mRNA as a template. This process also requires a primer and an enzyme, reverse transcriptase (a DNA polymerase that synthesizes a DNA strand from the mRNA) This c omplementary DNA is called cDNA cDNA may be attached to a vector such as a plasmid and then introduced into bacterial cells.
  22. 22. Considerations The plasmids used in gene cloning contain naturally occurring genes for some type of antibiotic resistance- e.g. Ampicillin or Tetracycline. When these genes are used to make a transgenic organism, the resistance gene may be transferred. There is concern that this resistance could be acquired by other organisms, thus creating further problems with antibiotic resistance.
  23. 23. Considerations, ctd . There is a reluctance on the part of some cultures and individuals to accept the concept of transgenesis, without which gene cloning could not be accomplished Some cloned genes are used in ‘engineering’ food crops, and food safety has become an issue with the public There has been a move to patent genes of interest – this can raise the cost of research and diagnosis – who ‘owns’ a human gene?
  24. 24. These points and others require research and informed debate- What are Your thoughts? What legislation has been passed here in New Zealand? Who controls work in genetic manipulation?
  25. 25. References Kreuzer, H., Massey, A.,2001, Recombinant DNA & Biotechnology , ASM Press, Washington Turner, P.C., et al, 1997, Instant Notes n MolecularBiology , Bios, Oxford www.agbiosafety.unl.edu/education/clone.htm http://avery.rutgers.edu/WSSP/Student Scholars/Session12/Session12html http://www.pssc.ttu.edu/pss3421/gene%20cloning%20Strategies.htm http://www.uic.edu/classes/phar/phar331/lecture7 http://www.biology.arizona.edu
  26. 26. Picture Credits Cc the cat, slide 5 courtesy of Texas A & M University, College of Veterinary Medicine Photos on slide 5, 7,12 & 17, L. Macdonald 2003 Graphics on slides 4, 8 &19, V. Ward, University of Auckland DNA Hybridization, slide 15, courtesy of Texas Tech University DNA cloning & screening, slides 10 & 14, courtesy of The University of Arizona
  27. 27. Acknowledgements Thanks go to Craig Millar and Andrew Dodd, School of Biological Science, University of Auckland Compiled by Linda Macdonald For NCEA Biology A.S. 3.6 While on a New Zealand Royal Society Science, Mathematics & Technology Teacher Fellowship

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