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Molecular adaptations in psychrophiles:   insights from “omic’’ methods
[object Object],[object Object],[object Object],[object Object],[object Object],Introduction
[object Object],[object Object],[object Object],[object Object],Cold Habitats
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Challenges
Physiological adaptations of psychrophiles
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],Membrane fluidity
[object Object],[object Object],Pathway of interconversion (Barbara ,A.M. etal .2005) Compatible Solutes
. ,[object Object],[object Object],Roles of CIPs in low temperature growth
Mechanism for coupling of transcription and translation through CSPs and CSHs . Crystal structure of CspB from Bacillus subtilis in complex with ssDNA Fluorescence microscopy of  Bacillus   subtilis  cells (Walid, M.E .et al . 2006)
Schematic view of the pattern of protein expression after  cold shock. Schematic representation of the Csp function during acclimation phase . (Horn,G. etal .2007)
. ,[object Object],[object Object],Transport
[object Object],[object Object],Energy Production
[object Object],[object Object],[object Object],[object Object],Carbon and Nitrogen Reserves
[object Object],Bioremediation
[object Object],Extracellular Compounds
[object Object],[object Object],[object Object],Enzymatic activity
[object Object],Activity of cold adapted  enzymes
(Baermans C.  et al  2007) Molecular adaptation  Explanation Genes involved Membranes Increase the fluidity of cellular membranes Desaturases Freeze-protection  Reduction of freezing point of cytoplasm Antifreeze proteins and ice-binding proteins Cold-shock and acclimation response Cellular response to lowering of  temperature  RNA-binding protein Protection against reactive oxygen species (ROS) Increased solubility of oxygen at low temperature Catalases, peroxidases Proteins and enzymes Maintain catalytic efficiency at low temperatures Reduced proline, internal hydrophobicity Genome plasticity To increase the adaptation ability to cope with low temperatures Transposases, prophages Molecular adaptations in cold adapted bacteria
[object Object],[object Object],[object Object],Adaptations to psychrophily from Metagenomic data
[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],(Casanueva A.  et al  2010)
[object Object],[object Object],Adaptations to psychrophily from proteomic data
[object Object],[object Object],[object Object],[object Object],Applications of psychrophiles
Cavicchioli R . et al  2002 Microorganism or product Application Polyunsaturated fatty acids Dietary supplements for humans, livestock and fish Ice nucleation proteins Food industry, synthetic snow Antifreeze proteins and solutes Cryoprotectants, cold-active catalysts Cold-adapted bacteria and fungi Food industry, including cheese and yoghurt manufacture, meat tenderising, flavour modification and lactose removal from milk Cold-adapted bacteria and fungi Bioremediation of ocean oil spills, contaminated ground water and toxic waste Ice – bacteria Frost protection for plants Methanogenic Archaea Methane production, low temperature waste treatment Examples of applications (other than enzymes) of cold-adapted microorganisms and their products
[object Object],[object Object],(Cavicchioli R . et al  2002) Importance of  archaeal systems
[object Object],[object Object],[object Object],Conclusions
[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],Future prospects
 

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molecular adaptations to psychrophily: insights into omic methods

  • 1. Molecular adaptations in psychrophiles: insights from “omic’’ methods
  • 2.
  • 3.
  • 4.
  • 6.
  • 7.
  • 8.
  • 9.
  • 10. Mechanism for coupling of transcription and translation through CSPs and CSHs . Crystal structure of CspB from Bacillus subtilis in complex with ssDNA Fluorescence microscopy of Bacillus subtilis cells (Walid, M.E .et al . 2006)
  • 11. Schematic view of the pattern of protein expression after cold shock. Schematic representation of the Csp function during acclimation phase . (Horn,G. etal .2007)
  • 12.
  • 13.
  • 14.
  • 15.
  • 16.
  • 17.
  • 18.
  • 19. (Baermans C. et al 2007) Molecular adaptation Explanation Genes involved Membranes Increase the fluidity of cellular membranes Desaturases Freeze-protection Reduction of freezing point of cytoplasm Antifreeze proteins and ice-binding proteins Cold-shock and acclimation response Cellular response to lowering of temperature RNA-binding protein Protection against reactive oxygen species (ROS) Increased solubility of oxygen at low temperature Catalases, peroxidases Proteins and enzymes Maintain catalytic efficiency at low temperatures Reduced proline, internal hydrophobicity Genome plasticity To increase the adaptation ability to cope with low temperatures Transposases, prophages Molecular adaptations in cold adapted bacteria
  • 20.
  • 21.
  • 22.
  • 23.
  • 24.
  • 25. Cavicchioli R . et al 2002 Microorganism or product Application Polyunsaturated fatty acids Dietary supplements for humans, livestock and fish Ice nucleation proteins Food industry, synthetic snow Antifreeze proteins and solutes Cryoprotectants, cold-active catalysts Cold-adapted bacteria and fungi Food industry, including cheese and yoghurt manufacture, meat tenderising, flavour modification and lactose removal from milk Cold-adapted bacteria and fungi Bioremediation of ocean oil spills, contaminated ground water and toxic waste Ice – bacteria Frost protection for plants Methanogenic Archaea Methane production, low temperature waste treatment Examples of applications (other than enzymes) of cold-adapted microorganisms and their products
  • 26.
  • 27.
  • 28.
  • 29.
  • 30.