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November 12, 2014 | Las Vegas, NV
Grant McAlister, Amazon Web Services
Greg Roberts, illumina
0
2000
4000
6000
8000
10000
12000
14000
16000
18000
both on fsync=0 sync commit=0 fsync=0 & sync commit=0
TransactionsperSecond
32 thread insert- fsync vs sync commit
16 segments 256 segments
0
20
40
60
80
100
120
140
160
both on fsync=0 sync commit=0 fsync=0 & sync commit=0
Time-Seconds
Bulk load 2GB of data -fsync vs sync commit
16 segments 256 segments
29.1 28.8
26.1
25.223.9
0
5
10
15
20
25
30
35
fsync=1 & sync commit=0 fsync=0 & sync commit=0
Time-Minutes
Index build on 20GB table
maintenance_work_mem=16MB &
checkpoint_segments=16
maintenance_work_mem=1024MB &
checkpoint_segments=16
maintenance_work_mem=1024MB &
checkpoint_segments=1024
29.1
23.4 23.9
28
0
5
10
15
20
25
30
35
maintenance_work_mem
Time-Minutes
Index build on 20GB table
16
512
1024
4096
Table
Foo
Trigger
Table
Foo
Trigger
insert
Sync
Replication
Async Replication
AZ1 AZ2 AZ3
Reads10% Reads10% Reads10% Reads10%
Reads10% Reads10% Reads10% Reads10%
Reads10%
Writes10%
Reads10%
Reads10%
Writes10%
Reads10%
Reads10%
Writes10%
Reads10%
Reads10%
Writes10%
Reads10%
Reads10%
Writes10%
Reads10%
Reads10%
Writes10%
Reads10%
Reads10%
Writes10%
Reads10%
Reads10%
Writes10%
Reads10%
Reads10%
Writes10%
Reads10%
Writes10%
Reads10%
Reads
90%
Writes10%
Primary
Writes10%
Replica1
Writes10%
Replica2
Writes10%
Replica3
Writes10%
Replica4
1X2X3X SCALE
1
2
3
4
5
6
7
8
1 2 4 8 16 32
Scale
Number of Nodes
Scale based on % Write
50% 40% 30% 20% 10%
AZ1 AZ2 AZ3
xlog1
xlog2
xlog3
xlog99
xlog1
xlog1
A - Foo
A- Bar
Source
A - Foo
A- Bar
Replica
0
1000
2000
3000
4000
5000
6000
7000
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
TransactionsperSecond(TPS)
Hours
100% Read - 20GB data
db.m1.medium + 200GB standard
$0.575 per hour
0
1000
2000
3000
4000
5000
6000
7000
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
TransactionsperSecond(TPS)
Hours
100% Read - 20GB data
db.m1.medium + 200GB standard
db.m3.medium + 200G + 2000 IOPS
$0.575 per hour
$0.408 per hour
0
1000
2000
3000
4000
5000
6000
7000
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
TransactionsperSecond(TPS)
Hours
100% Read - 20GB data
db.m1.medium + 200GB standard
db.m3.medium + 200G + 2000 IOPS
db.m3.large + 200G + 2000 IOPS
$0.575 per hour
$0.408 per hour
$0.508 per hour
0
1000
2000
3000
4000
5000
6000
7000
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
TransactionsperSecond(TPS)
Hours
100% Read - 20GB data
db.m1.medium + 200GB standard
db.m3.medium + 200G + 2000 IOPS
db.m3.large + 200G + 2000 IOPS
db.t2.medium + 200GB gp2
$0.105 per hour
$0.575 per hour
$0.408 per hour
$0.508 per hour
0
1000
2000
3000
4000
5000
6000
7000
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
TransactionsperSecond(TPS)
Hours
100% Read - 20GB data
db.m1.medium + 200GB standard
db.m3.medium + 200G + 2000 IOPS
db.m3.large + 200G + 2000 IOPS
db.t2.medium + 200GB gp2
db.t2.medium + 1TB gp2
$0.105 per hour
$0.575 per hour
$0.233 per hour
$0.408 per hour
$0.508 per hour
Custom docker job
scheduler
– Simple design
– needed fast and
reliable ACID
transactions
– Semi-structured and
relational data
API service
SpaceDock
Docker
BSFS - FUSE
Docker registry
Learn more at:
developer.basespace.illumina.com
Mission control
mission.basespace.illumina.com
Elastic Load
Balancing
API Server(s)
on EC2
Mission Control Service
Amazon RDS
PostgreSQL
Amazon RDS
DB
(Multi-AZ)
Locked down Security Group
On-Demand Linux
EC2 instances with
mounted volumes
Schedules
Job
Native App AMI
BSFS -
FUSE drive
SpaceDock
App
Inp
ut
Output
App Docker Image
Cancels
on failure
Amazon S3
Data Transfer
Developer Machines/
External Instances
Can Receive Jobs just
like on-demand
instance
Amazon Route 53
DNS
http://pgtune.leopard.in.ua/
Config Info Default New
Max_Connections Is based on memory and not CPU. Generally lower
this to match max settings of app pool.
InstanceMemory/125
82880 =2836
1000
Shared_Buffers Some may consider conservative, but depends on
app. 25% - 40% is ideal in 9.3.
InstanceMemory/327
68=8 GB
Same
Work_Mem Too conservative especially if you lower
max_connections
Engine Default= 1MB 3MB
Maintenance_Work_Mem Red flag, way too low. This determines vacuum and
index performance. Recommend ~1/16 system
memory.
Engine Default =
16MB
1.9 GB
Effective_Cache_Size Recommended range is 50-75% system memory. InstanceMemory/163
84 = 17 GB
Same
+50% 0
2000
4000
6000
8000
db.m2.2xlarge db.m3.2xlarge
Total Time - Seconds
(smaller better)
http://bit.ly/awsevals

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(SDD409) Amazon RDS for PostgreSQL Deep Dive | AWS re:Invent 2014

  • 1. November 12, 2014 | Las Vegas, NV Grant McAlister, Amazon Web Services Greg Roberts, illumina
  • 2.
  • 3.
  • 4. 0 2000 4000 6000 8000 10000 12000 14000 16000 18000 both on fsync=0 sync commit=0 fsync=0 & sync commit=0 TransactionsperSecond 32 thread insert- fsync vs sync commit 16 segments 256 segments
  • 5. 0 20 40 60 80 100 120 140 160 both on fsync=0 sync commit=0 fsync=0 & sync commit=0 Time-Seconds Bulk load 2GB of data -fsync vs sync commit 16 segments 256 segments
  • 6. 29.1 28.8 26.1 25.223.9 0 5 10 15 20 25 30 35 fsync=1 & sync commit=0 fsync=0 & sync commit=0 Time-Minutes Index build on 20GB table maintenance_work_mem=16MB & checkpoint_segments=16 maintenance_work_mem=1024MB & checkpoint_segments=16 maintenance_work_mem=1024MB & checkpoint_segments=1024
  • 8.
  • 9.
  • 10.
  • 12.
  • 13.
  • 16. Reads10% Reads10% Reads10% Reads10% Reads10% Reads10% Reads10% Reads10% Reads10% Writes10% Reads10% Reads10% Writes10% Reads10% Reads10% Writes10% Reads10% Reads10% Writes10% Reads10% Reads10% Writes10% Reads10% Reads10% Writes10% Reads10% Reads10% Writes10% Reads10% Reads10% Writes10% Reads10% Reads10% Writes10% Reads10% Writes10% Reads10% Reads 90% Writes10% Primary Writes10% Replica1 Writes10% Replica2 Writes10% Replica3 Writes10% Replica4 1X2X3X SCALE
  • 17. 1 2 3 4 5 6 7 8 1 2 4 8 16 32 Scale Number of Nodes Scale based on % Write 50% 40% 30% 20% 10%
  • 20. A - Foo A- Bar Source A - Foo A- Bar Replica
  • 21.
  • 22.
  • 23.
  • 24.
  • 25.
  • 26.
  • 27. 0 1000 2000 3000 4000 5000 6000 7000 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 TransactionsperSecond(TPS) Hours 100% Read - 20GB data db.m1.medium + 200GB standard $0.575 per hour
  • 28. 0 1000 2000 3000 4000 5000 6000 7000 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 TransactionsperSecond(TPS) Hours 100% Read - 20GB data db.m1.medium + 200GB standard db.m3.medium + 200G + 2000 IOPS $0.575 per hour $0.408 per hour
  • 29. 0 1000 2000 3000 4000 5000 6000 7000 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 TransactionsperSecond(TPS) Hours 100% Read - 20GB data db.m1.medium + 200GB standard db.m3.medium + 200G + 2000 IOPS db.m3.large + 200G + 2000 IOPS $0.575 per hour $0.408 per hour $0.508 per hour
  • 30. 0 1000 2000 3000 4000 5000 6000 7000 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 TransactionsperSecond(TPS) Hours 100% Read - 20GB data db.m1.medium + 200GB standard db.m3.medium + 200G + 2000 IOPS db.m3.large + 200G + 2000 IOPS db.t2.medium + 200GB gp2 $0.105 per hour $0.575 per hour $0.408 per hour $0.508 per hour
  • 31. 0 1000 2000 3000 4000 5000 6000 7000 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 TransactionsperSecond(TPS) Hours 100% Read - 20GB data db.m1.medium + 200GB standard db.m3.medium + 200G + 2000 IOPS db.m3.large + 200G + 2000 IOPS db.t2.medium + 200GB gp2 db.t2.medium + 1TB gp2 $0.105 per hour $0.575 per hour $0.233 per hour $0.408 per hour $0.508 per hour
  • 32.
  • 33.
  • 34.
  • 35. Custom docker job scheduler – Simple design – needed fast and reliable ACID transactions – Semi-structured and relational data API service SpaceDock Docker BSFS - FUSE Docker registry Learn more at: developer.basespace.illumina.com Mission control mission.basespace.illumina.com Elastic Load Balancing API Server(s) on EC2 Mission Control Service Amazon RDS PostgreSQL Amazon RDS DB (Multi-AZ) Locked down Security Group On-Demand Linux EC2 instances with mounted volumes Schedules Job Native App AMI BSFS - FUSE drive SpaceDock App Inp ut Output App Docker Image Cancels on failure Amazon S3 Data Transfer Developer Machines/ External Instances Can Receive Jobs just like on-demand instance Amazon Route 53 DNS
  • 36.
  • 37.
  • 38. http://pgtune.leopard.in.ua/ Config Info Default New Max_Connections Is based on memory and not CPU. Generally lower this to match max settings of app pool. InstanceMemory/125 82880 =2836 1000 Shared_Buffers Some may consider conservative, but depends on app. 25% - 40% is ideal in 9.3. InstanceMemory/327 68=8 GB Same Work_Mem Too conservative especially if you lower max_connections Engine Default= 1MB 3MB Maintenance_Work_Mem Red flag, way too low. This determines vacuum and index performance. Recommend ~1/16 system memory. Engine Default = 16MB 1.9 GB Effective_Cache_Size Recommended range is 50-75% system memory. InstanceMemory/163 84 = 17 GB Same