Rachel Germain presented research on how spatial structure can cascade across trophic levels. Studies of aspen understory plants, tallgrass prairie plants, and milkweed insect specialists found that spatial constraints like patch size and isolation affected species differently depending on traits like dispersal ability and sensitivity to predators. For example, animal-dispersed aspen plant species showed non-island biogeography patterns, while predation modified biogeographic constraints for sensitive milkweed insects. The results emphasize that spatial dynamics are complex and vary within and among trophic levels in ways not fully captured by island biogeography theory alone.
Genotype-By-Environment Interaction (VG X E) wth ExamplesZohaib HUSSAIN
Introduction
Phenotypic variation can be caused by the combination of genotypes and environments in a population. Genotypes are all equally sensitive to their environments, meaning that a change of environment would impact the phenotype of all genotypes to the same extent. In fact, genotypes very often have different degrees of sensitivity to environmental conditions. This cause of phenotypic variance is called genotype by- environment interaction and is symbolized by VG x E. This adds another term to the expression for the independent causes of total phenotypic variation in a population
Ve = VG + VE + VG xE
Genotype-By-Environment Interaction (VG X E) wth ExamplesZohaib HUSSAIN
Introduction
Phenotypic variation can be caused by the combination of genotypes and environments in a population. Genotypes are all equally sensitive to their environments, meaning that a change of environment would impact the phenotype of all genotypes to the same extent. In fact, genotypes very often have different degrees of sensitivity to environmental conditions. This cause of phenotypic variance is called genotype by- environment interaction and is symbolized by VG x E. This adds another term to the expression for the independent causes of total phenotypic variation in a population
Ve = VG + VE + VG xE
Effects of diflubenzuron on shrimp population dynamics: from lab experiments ...Jannicke Moe
The continued growth of marine aquaculture production has presented the industry with environmental and production concerns, of which the ectoparastic salmon lice (Lepeophtheirus salmonis) has gradually become a major problem. A commonly used pesticide against this crustacean is diflubenzuron (DFB), which acts as a chitin synthesis inhibitor and thereby interfere with the moulting stages during sea lice development. However, DFB from medicine feed may also affect non-target crustaceans such as the Northern shrimp (Pandalus borealis), which is an economically and ecologically important species in Norwegian fjords. Laboratory experiments have demonstrated that shrimp exposed to DFB through fish feed have reduced survival (ca. 60%) compared to control, in both the larval and the adult stages. Moreover, the effects of DFB exposure is more severe under future climate conditions (higher temperature). The aim of this study is to make the information on these mechanistic effects more relevant for risk assessment at the population level. We have developed an age-structured population model representing a Northern shrimp population located in a hypothetical Norwegian fjord containing a fish farm, under both ambient and future climates. Our model is based on thorough knowledge of shrimp biology and clear results on toxicological effects from the laboratory experiments. Nevertheless, extrapolating the individual-level effects to the population level poses several challenges. Relevant information on shrimp populations in fjords is sparse (such as abundances, survival and reproductive rates, and density-dependent processes). The degree of exposure to medicine feed at different distances from aquaculture farms is also uncertain. We have therefore developed a set model scenarios representing different medicine application schemes and different degrees of exposure for the shrimp populations. The purpose of the model is to predict effects of DFB exposure on population-level endpoints such as long-term abundance and age structure, and to assess the risk of population decline below threshold abundances.
Effects of diflubenzuron on shrimp population dynamics: from lab experiments ...Jannicke Moe
The continued growth of marine aquaculture production has presented the industry with environmental and production concerns, of which the ectoparastic salmon lice (Lepeophtheirus salmonis) has gradually become a major problem. A commonly used pesticide against this crustacean is diflubenzuron (DFB), which acts as a chitin synthesis inhibitor and thereby interfere with the moulting stages during sea lice development. However, DFB from medicine feed may also affect non-target crustaceans such as the Northern shrimp (Pandalus borealis), which is an economically and ecologically important species in Norwegian fjords. Laboratory experiments have demonstrated that shrimp exposed to DFB through fish feed have reduced survival (ca. 60%) compared to control, in both the larval and the adult stages. Moreover, the effects of DFB exposure is more severe under future climate conditions (higher temperature). The aim of this study is to make the information on these mechanistic effects more relevant for risk assessment at the population level. We have developed an age-structured population model representing a Northern shrimp population located in a hypothetical Norwegian fjord containing a fish farm, under both ambient and future climates. Our model is based on thorough knowledge of shrimp biology and clear results on toxicological effects from the laboratory experiments. Nevertheless, extrapolating the individual-level effects to the population level poses several challenges. Relevant information on shrimp populations in fjords is sparse (such as abundances, survival and reproductive rates, and density-dependent processes). The degree of exposure to medicine feed at different distances from aquaculture farms is also uncertain. We have therefore developed a set model scenarios representing different medicine application schemes and different degrees of exposure for the shrimp populations. The purpose of the model is to predict effects of DFB exposure on population-level endpoints such as long-term abundance and age structure, and to assess the risk of population decline below threshold abundances.
Shrubs and invasive grass predict lizard occurrence in an arid shrublandAlessandro Filazzola
Filazzola, A., Westphal, M., Powers, M., Liczner, A.R., Johnson, B, & Lortie, C.J.The realized niche of the endangered blunt-nosed leopard lizard (Gambelia sila) is determined by interactions between native shrubs and invasive annual grass. ESA 100th Meeting Baltimore.
Pines and paddocks: socioecology and population genetics of marsupials in fra...University of Adelaide
The eleventh installment of the 2009 Science Seminar Series presented by Doctor Melanie Lancaster. The presentation is entitled "Pines and paddocks: socioecology and population genetics of marsupials in fragmented systems?"
The slides contain a summary on my research on the ''abundances and distribution of the five most preferred food species for the mountain gorilla of the Virungas''. The presentation was delivered at the University of Twente, the Faculty of Geo-Information Science and Earth Observation (ITC). It is part of a continuous follow up on the student's research - required for the successful completion of a Master of Science at ITC, NL
THE EFFECTS OF CLEARCUT SIZE ON THE BIRD COMMUNITY IN THE SECOND COLLEGE GRANTjoshmooney
Abstract. This study examines the effects of forest opening (clearcut) size on the surrounding forest-bird community with the objective of offering management suggestions for foresters who employ the clearcut method. I hypothesized that large and small clearcuts would have different effects on the forest-bird assemblage associated with each. I used the point-count method to assess bird abundance in clearcuts, on the edges, and 100 m into the forest from the edges of large and small clearcuts. I found that Neotropical migrant birds and forest-interior birds were the most affected by large clearcuts showing significantly lower abundance in forest areas 100 m from large clearcut edges than in forest areas 100 m from small clearcuts. Edge-open birds were more abundant in large clearcut openings and edges than in small clearcut openings and edges. Blue jays (an avian nest predator) were more abundant on the edges of large clearcuts than on the edges of small clearcuts. A recent study found that forest-interior bird abundance levels off after 100 m distance from small (0.4 ha) forest openings. This result combined with my findings suggest that small openings in the Second College Grant represent less of a disturbance to Neotropical migrants and forest-interior birds. Additionally, given higher abundances of an avian nest predator in large clearcuts, reproductive success could be much lower in areas associated with large clearcuts. Some species such as the White-throated Sparrow (Zonotrichia albicollis), however preferred large clearcuts suggesting that there are some benefits to overall bird abundance by including large clearcuts in a managed landscape.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
1. Cascading effects of spatial structure
across trophic levels
Rachel M. Germain
Killam/Biodiversity Postdoctoral Fellow
Main collaborators: Natalie Jones, Tess Grainger, Ben Gilbert, Andrew MacDougall
2. Community ecologist: species coexistence
and metacommunities
Schematic modified from Velland 2016
Botany seminar Oct. 11th @12:30pm
env gradient
5. Predictions of island biogeography/metapopulation
theories
species richness/
site occupancy
larger, less isolated patches
species richness/
site occupancy
smaller, more isolated patches
MacArthur & Wilson 1967; Hanski 1994
6. Predictions of island biogeography/metapopulation
theories
species richness/
site occupancy
larger, less isolated patches
species richness/
site occupancy
smaller, more isolated patches
MacArthur & Wilson 1967; Hanski 1994
7. Spatial constraints likely vary among species
sessile vs. motile, dispersal ability, cognitive function → behavior (habitat selection, territory, predator
avoidance), body size, matrix sensitivity, etc.
9. Multi-trophic extensions of island biogeography
and metacommunity theories
Trophic dependency: predators can only establish in patches that
already contain their prey
• prey must outpace their predators
• predator distributions should be a subset of prey distributions
• IBT patterns should be stronger at higher trophic levels
Holt 2002 EcoRes; Leibold et al. 2004 EcoLett; Harvey & MacDougall 2014 Ecology
Assumes that predators: are specialists, are bound to same habitat patches as their prey, and experience
the world at the same spatial scales as their prey
10. What are the consequences for diversity in systems where
spatial constraints differ within and among trophic levels?
aspen-understory plants
Jones, Germain, et al. 2015 JEcology
tall-grass prairie plants
Germain et al. 2013 AmNat
milkweed insect specialists
Grainger, Germain, et al.
in review Ecology
11. What are the consequences for diversity in systems where
spatial constraints differ within and among trophic levels?
aspen-understory plants
Jones, Germain, et al. 2015 JEcology
tall-grass prairie plants
Germain et al. 2013 AmNat
milkweed insect specialists
Grainger, Germain, et al.
in review Ecology
14. System: tall-grass prairie plant communities
How does risk avoidance
behavior by small mammals
affect spatial patterns in plant
communities?
predation
risk
cognition
yes
yes
no
range
size
15. Predation risk increases with distance from
old-field edge
pre-
prairie
more removal less removal
old-
field
Prediction:
16. Closed
old-field
Pre-prairie
-30 -10 10 30 50 70 90+
Distance from edge (m)
Prop.seedsremoved
F1,84 = 150.9, P < 0.0001*
Seed removal was strongest in the old-field, and
decreased with distance from the edge
17. Consequences of small mammals for plant
diversity depends on foraging selectivity
Cafeteria trial w/ 8 plant species from 3
functional groups
B. kalmii H. divaricatus R. blanda
18. 0
2
4
6
8
10Seedsremaining
Seed species
Forb seeds were consumed significantly more than shrub and
grass seeds
Functional group: F2,23 = 29.97, P < 0.001*
Species: F5,23 = 0.35, P = 0.876
Forbs Shrubs Grasses
19. P = 0.012*F1,48 = 12.82, P <0.001*
β-diversity(Jaccard’sdissimilarity)
α-diversity(speciesperplot)
α β
Distance from edge (m) Distance from edge (m)
What does this all mean for plant community
distributions?
20. What does this all mean for plant community
distributions?
P = 0.012*F1,48 = 12.82, P <0.001*
β-diversity(Jaccard’sdissimilarity)
α-diversity(speciesperplot)
α β
Distance from edge (m) Distance from edge (m)
22. What are the consequences for diversity in systems where
spatial constraints differ within and among trophic levels?
aspen-understory plants
Jones, Germain, et al. 2015 JEcology
tall-grass prairie plants
Germain et al. 2013 AmNat
milkweed insect specialists
Grainger, Germain, et al.
in review Ecology
25. Milkweed specialists differ in susceptibility to
predators and dispersal ability
Constrained
by predation1:
yes
1Duffey & Scutter 1972, Zalucki & Kitching 1982, Smith et al. 2008
2Jones & Parella 1986, St Pierre & Hendrix 2003, McCauley et al. 1981
no
yes no
Constrained
by size/isolation2:
<100 m >1000 m
26. Predictive framework for island biogeography
informed by natural history
P, S, I
S, Inone
P
Patchoccupancy
Patch size/isolation
P = predator, S = size, I = isolation
Do constraints of patch
size/isolation vary among
species, and are they altered
by predation?
27. Field surveys of milkweed patches
Patch isolation
Patch size (m2)
𝐼𝑖 = 1 −
𝑗≠𝑖
𝑛
𝐴𝑗 𝑒
−𝑑 𝑖𝑗 𝛼
Hanski 1994 TREE
Presence/absence data Predator abundances
occupancy ~ patch size x patch isolation x predator abundances
28. Predictive framework for island biogeography
informed by natural history
none
P
N.S.
Patch isolation
Occupancy
P, S, I
S, I
P = predator, S = size, I = isolation
29. Predictive framework for island biogeography
informed by natural history
none
P
P = predator, S = size, I = isolation
P, S, I
S, I
30. Predictive framework for island biogeography
informed by natural history
none
P
P = predator, S = size, I = isolation
P, S, I
S, I
Zalucki & Kitching 1982a JZoology, Zalucki & Kitching 1982b Oecologia
“More eggs were laid per plant on single
isolated plants than on plants within a patch”
“The trend was for increasing [mortality] with
increasing patch size” → predation
31. Predictive framework for island biogeography
informed by natural history
none
P
P = predator, S = size, I = isolation
P, S, I
S, I
32. Tying it all together…
Dispersal-limited species were directly
affected by spatial constraints
Predation affected palatable species
indirectly through interactions with
spatial drivers
Incorporating predator-avoidance
tactics (refuge seeking and crypsis) can
help refine predictions
34. What are the consequences for diversity in systems where
spatial constraints differ within and among trophic levels?
aspen-understory plants
Jones, Germain, et al. 2015 JEcology
tall-grass prairie plants
Germain et al. 2013 AmNat
milkweed insect specialists
Grainger, Germain, et al.
in review Ecology
35.
36. System: Aspen understory plant communities
Do effects of stand size and isolation on species
distributions vary with dispersal mode?
cognition
yes
no
range
size
37. Field surveys of aspen stands
𝐼𝑖 = 1 −
𝑗≠𝑖
𝑛
𝐴𝑗 𝑒
−𝑑 𝑖𝑗 𝛼
Hanski 1994 TREE
Stand characteristics
size (m2)
isolation
stand age
Presence/absence data Dispersal mode
No aid
Wind
Animal
Aspen stand
Adjacent grassland
38. Predicted effects of stand size and isolation
for different dispersal modes
No aid Wind-dispersed Animal-dispersed
39. Observed effects of stand size and isolation
for different dispersal modes
No aid Wind-dispersed Animal-dispersed
competition among dispersal modes?
ruderal species and disturbance?
40. Paired plot design to identify aspen specialists
vs. generalists or grassland specialists
Quantifying species affinity for aspen stands
all species included
occurs in aspen stands ≥50% of the time
occurs in aspen stands ≥ 66% of the time
occurs in aspen stands ≥75% of the time
cut-off is not always clear in “diffuse” metacommunities
Cook et al. 2002 EcoLett; Leibold et al. 2004 EcoLett
metacommunity = species that occur in favourable habitat
patches imbedded in a matrix of unfavourable habitat
41. The results are insensitive to cut-off, except
when all species are included
SR ~ stand size
Matrix-associated species can obscure metacommunity processes – paired plot design is one
day to discount their effects
42. IBT patterns are somewhat consistent with
our initial predictions, but …
There are three complicating factors:
• dispersal mode
• unexplained inconsistencies
• grassland specialists + generalists
43. …and so, to summarize…
ability to persist in matrix habitat = modifications to biogeographic
constraints in insect species that are sensitive to predators
greater habitat use by granivores in low risk areas = gradients in
ecological filters that dictate plant species distributions
habitat selection by animals = non-IBT patterns for animal-dispersed
plant species
44. “patch area and isolation are surprisingly poor
predictors of occupancy for most species”
data from 1,015 bird, mammal, reptile, amphibian, and
invertebrate population networks
metapopulation metacommunity∑ =
46. Island biogeography in non-island systems
suitable habitat unsuitable habitat
Are patch size and isolation unimportant compared to/in combination with local factors? How do spatial
dynamics cascade across trophic levels? How do spatial dynamics change with species additions or losses at
different trophic levels? Should conservationists only be focusing on patch size/isolation?