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THOR Workshop - Services EBI
- 1. http://project-thor.eu1 THOR Partner Services Year1 Workshop, Amsterdam
- 2. http://project-thor.eu2 Schedule EBI -Florian Graef PANGAEA – Markus Stocker CERN – Robin Dasler DataCite - Laura Rueda
- 3. http://project-thor.eu3 Mission Enable seamlessnavigation across research space by: Embedding PID services in specific research contexts to: Make them easily discoverable and usable by researchers enabling Clear credit and provenance for research objects
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- 5. http://project-thor.eu6 Task timelines M1 M12M30 T3.1 M4 T3.2 M19 M25M10 T3.3 M29M13 T3.4 Task 3.1 Integration of ORCIDs into data submission services Task 3.2. Dataset claiming services and workflows Task 3.3 Cross-linking of identifier systems Task 3.4 Data citation services
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- 7. http://project-thor.eu9 Genes, genomes &variation RNA Central Array Express Expression Atlas Metabolights PRIDE ChEMBL ChEBI Molecular structures Protein Data Bank in Europe Electron Microscopy Data Bank European Nucleotide Archive European Variation Archive European Genome-Phenome Archive Gene, protein & metabolite expression Protein sequences, families Chemical biology Reactions, interactions & pathways IntAct Reactome MetaboLights Systems BioModels Enzyme Portal BioSamples Ensembl Ensembl Genomes GWAS Catalog Metagenomics portal Europe PMC Gene Ontology Experimental Factor Ontology Literature & ontologies InterPro Pfam UniProt
- 8. http://project-thor.eu10 Institution-Specific Requirements EMBL-EBI Many submission databases Knowledge/Added Value databases International delivery and governance structures Ecosystem of persistent identifiers Central ORCID services with an API No duplication of effort ORCID integrations with consistent UIs across resources Easy maintenance of a single service
- 9. http://project-thor.eu11 Approach EMBL-EBI DevelopedMiddleware layer with an integration API library Middleware mediates communication between applications Enables EBI databases to incorporate ORCID iDs in Web Forms ORCID-EBI Hub
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- 11. http://project-thor.eu13 API Integration Demonstration •Available on GitHub: https://github.com/thor-project/ebi
- 12. http://project-thor.eu14 Early Adoption: Metabolights AuthenitcatedORCIDs added to submission form and underlying data record
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- 17. http://project-thor.eu22 Next Steps Closingthe loop: Pushing metadata to ORCID record Claiming systems for previously published data Extending the loop Integration of data submission with article submission systems Sharing ORCID information (e.g. based on claims, back to data resources) Alignment of identifiers (life sciences data identifiers.org; ORCID and ISNI) Enabling data citation
- 18. http://project-thor.eu23 Impact Life Sciences:only the beginning. Social lag, not only from scientists but database providers Key to integrate with other workflows in particular to boost impact (forthcoming with future tasks …). Expected: Datasets claimed to ORCIDs ORCIDs used more widely in data space Improved crosslinking between literature and data
Editor's Notes
- #10 The slide shows the core resources at the EBI to show the range of data you can access through the EBI.
- #13 A service with an API that any number of databases at EBI can use to interface with the ORCID registry to verify user identity and populate existing data submission forms with data from their ORCID profile. Special emphasis was put on the simplicity of integrating existing web forms with the API and two databases, Metabolights and EMPIAR have already integrated this into their workflows. EBI are actively engaging with other life science databases (BioStudies, PDBe, ENA, IntAct, PRIDE and ArrayExpress) and expect these to begin using the API over the next months and years, depending on governance structures and production plans.