The data limbo in modern biomedical research
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This document discusses the need for improved data management in biomedical research. It proposes developing an electronic laboratory notebook (ELN) system that integrates planning, execution and analysis of experiments. The system would use a bottom-up approach, allowing researchers to share knowledge and tasks. It would incorporate apps to streamline processes and be deployed freely to facilitate worldwide adoption. The goal is to establish an open information and organization platform to improve collaboration and innovation across all sectors of research and development.
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- 17. Electronic Laboratory Notebooks (ELNs) Research Planning Execution Analysis ELN
- 18. Electronic Laboratory Notebook Index . . . . 12.08.2014 . RNA immuno-precipitation (RIP) . . .. ... Apps App1 . . . . . Buffer App Add Serial Create Buffer . . . . AppX Buffer Serial: B299, 22.07.2014 Quality by Design Modified from Evernote Free text + Apps
- 19. ELN + Laboratory Information Management System (LIMS)
- 20. Electronic Laboratory Notebooks (ELNs) Research Planning Execution Analysis ELN
- 21. Planning to Execution Index . . . . 12.08.2014 . . . qPCR p21, GAPDH; Carcinomas . . .. ... Apps App1 . . . . . . . . . . . . . . . . . qPCR 7600 Create Import files Analyze . . . . AppX ## qPCR p21, GAPDH; Carcinomas Electronic Laboratory Notebook Modified from Evernote
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- 23. Index . . . . 12.08.2014 . . . qPCR p21, GAPDH; Carcinomas . . .. ... Apps App1 . . . . . . . . . . . . . . . . . qPCR 7600 Create Import files Analyze . . . . AppX ## qPCR p21, GAPDH; Carcinomas Electronic Laboratory Notebook Execution to Analysis Results + info Settings.XML
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- 25. Execution to Analysis Research Planning Execution Analysis ELN John Anton Sylvia Anna
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- 27. Information and Organization Information Technology (IT) platforms Old concept New interface All-in-one Simple! User generated content Apps machine human NLP ready!
- 28. Information and Organization Information Technology (IT) platforms Old concept New interface All-in-one Simple! User generated content Apps machine human 1 Machine = 1 App $$$ Training old and new personnel $$$ Worldwide deployment Everybody can develop and sell Apps NLP ready!
- 29. Means and Ends ü Implement a I&O platform ü All sectors (Healthcare, Material Science…) ü R&D based industry (Knowledge, tracking, SOPs-dependent) ü All stages: from R&D to production ü All levels: from technical staff to administration ✗ Sell software
- 30. Get work done for free! 1. Generate basis ELN + LIMS + Cloud solution package 2. Distribute package and source code for free 3. Keep control of official releases ü Worldwide implementation (no extra costs) ü Full control of roadmap ü Reduce training costs of future employees (long term) ü Free testing of new implementations ü Increased feedback ü Development of Apps and basic platform by third parties (Free + Commercial)
- 31. Find a partner! Most popular! Most popular! Most popular! Most popular! Freeware + Commercial Cloud, Storage, Communications Databases, Big Data, Applications Popular!
- 32. ¿ ✔︎