Pub tator a web based tool for assisting manual biocuration
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PubTator is an automated, web-based system that assists with biocuration by providing PubMed-like functionality along with text mining algorithms to improve the efficiency and accuracy of manual curation. It is publicly available at http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator/ and allows users to select documents, annotate texts with bioconcepts, establish biorelations between concepts, and download annotations. The system aims to help keep pace with the rapid growth of biomedical literature by facilitating the curation process.
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Pub tator a web based tool for assisting manual biocuration
- 1. By Anil Kumar M.Sc. II Systems Biology and Bioinformatics
- 3. PubTator is a automated web based system for assisting biocuration. Manually curating knowledge from biomedical literature into structured databases is highly expensive and time consuming. It makes it difficult to keep pace with the rapid growth of the literature.
- 4. PubTator is unique in a way by providing PubMed like interface andis equipped with challenge winning text mining algorithms. PubTator has shown the capability of improving both efficiency and accuracy of manual curation. It is publicly available at: http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/ PubTator/
- 5. Homepage
- 7. 1. Click here to select this pmid 1. Click here to select all 2. Add to a new Collection 2. Add to a new Collection Creating a new Collection
- 8. Defining a new Annotation Collection
- 10. Creating a new Bioconcept and a Biorelation
- 11. Add a sub- bioconcept/ delete bioconcept Create a bioconcept Bioconcept definition Choose the ancestors and children in bioconcept ontology structure
- 13. Document Triage Annotating a File 1. Select text 2. Click on a relevant button
- 14. 3. Enter ID of the bioconcept
- 15. After Annotation
- 17. 1. Select Bioconcept 2. Click Button 3. Bio-relation display To save annotations click on this button Establishing Biorelations
- 18. Download Annotations for single PMID Download annotations for this collection Downloading Annotations
- 19. Download annotations in BioC format
- 20. Thank You