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CHARME is supported by the EU
Framework Programme Horizon 2020
COST Action Ca15110
CHARME-Harmonisingstandardisationstrategiesto
increaseefficiencyandcompetitivenessof
Europeanlifescienceresearch
CombinedCHARME,EMBnet,NETTAB2016 Workshop
COST Action CA15110
Domenica D’Elia
CHARME is supported by the EU
Framework Programme Horizon 2020
COST Action Ca15110
- WHAT
- WHY
- HOW
THE CHARME ACTION
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
About COST
Mission
“COST aims to enable breakthrough scientific developments leading to new
concepts and products. It thereby contributes to strengthening Europe’s research
and innovation capacities“
To achieve its mission, COST endeavors to:
- Build capacity by connecting high-quality scientific communities in Europe and
worldwide
- Provide networking opportunities
- Increase research impact on policy makers, regulatory bodies and national
decision makers as well as on the private sector
The longest-running
European framework for
“European Cooperation in
Science andTechnology”
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
CHARME
Countries
March 2016 - April 2020
Supporters at proposal stage:
 In total 64 supporters
 23 EU countries
 13 associated non-EU countries
Current status:
 28 countries signed forCHARME
 2 pending for signature
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
Why CHARME ?
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
Problem of
current life
science research
- 80-90% of the research data are not re-usable or accessible
[1]
- There is a crisis in data reproducibility [2]
Reasons:
Data are not shared via (public) repositories
Appropriate metadata missing
Information missing about experiments
Data formats are not appropriate
1) DFG, German Research Foundation evaluation
2) Nature’s survey on reproducibility in research (Bakern M, Nature (533) (2016): 452-454
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
Problem of
current life
science research
 Standardisation Initiatives & Organisations are
currently working largely independently from each
other
Source:modifiedfromapresentationofJ.Lonien,DIN
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
Problem of
current life
science research
 The available tools and legislation on
standards and Standard Operating Procedures
(SOPs) are still not:
- Sufficiently comprehensive
- Efficient
- Harmonised
- Adopted by the communities
F A I R
Modelling
Data Integration
Visualisation
Data
generation -
Raw data
Paper
Plattforms
Analysis
Repositories
LARGE SCALE
SMALL SCALE
SEEK
OPENAIR
SOURCE DATA
PC, HOME SERVER
INSTITUTIONALSERVER
PUBLIC SERVER,
CLOUDES
EXPERIMENTAL
DESIGN, STATISTIC
MINIMAL SOP‘S
EDUCATION FUNDER
INDUSTRY
FUNDER
EDUCATION
EDUCATION INDUSTRY
S Y S T E M S L E V E L
EDUCATION
SOP‘SSOP‘S
Training
Training
SOP‘S
FORMATS?
FORMATS?
FORMATS ?
FORMATS?
FUNDER
TrainingS T O R A G E L E V E L
A N A LY S I S & P U B L I C A T I O N L E V E L
Training
Exploitation
or
Needs and requirements along the pipeline
of acquisition of data to (re)use
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
Destination
of data
We need to consider what are potential destinations of our data
Repositories and Platforms
e.g. SEEK, OpenAIRE, Data Journals
Systems Biology approaches
Integration and modeling
Publications / Journals
…and need to identify (minimal) requirements for respective
standards and formats
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
Where do we
come from?
CHARME is based on the work and outcomes of different
European Initiatives (among others)
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
AIM & primary objectives
CHARME aims to bridge and combine the fragmented areas of the of
various moves in the development of new norms and standards to achieve
a breakthrough in standardisation efforts.
CHARME will identify needs and gaps, teaming up with other initiatives
and organisations to avoid duplication and overlap of standardisation
activities.
CHARME will develop a common, coordinated, long-term strategy, by
active involvement of all stakeholders (from research, industry and policy),
to successfully assimilate standards into the daily work-flow.
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
WG 1 Community / Platform building
Building a network of experts
from academia and industry
WG 2 Innovation and technology transfer
Development of an Action
Plan for quality manage-
ment and standardization
WG 3 Implementation
Design, implementation, and
incorporation of software
solutions
WG 4 Dissemination & Exploitation
Development of a coherent
implementation strategy
WG 5 Education
Knowledge transfer into
educational purposes
Management
5 interacting Working Groups
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
 to involve the bioinformatics community
 know each other
 exchange ideas
 involve in CHARME those of you that would be
happy to join and collaborate
Aims of CHARME in this workshop
http://www.cost-charme.eu/
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
Contacts:
Dr SusanneHollmann – Coordinatorof CHARME(shollman@uni-potsdam.de)
DrErikBongcam-Rudloff* – Vice-Coordinatorof CHARME(erikbongcam@slu.se)
Prof OsmanUgurSezerman – WG1Lead (ugur.sezerman@acibadem.edu.tr)
Dr AndreasKremer – WG2Lead (mailto:andreas.kremer@ittm-solutions.com)
ProfChrisEvelo* – WG3Lead (mailto:chris.evelo@maastrichtuniversity.nl)
DrDomenicaD'Elia* – WG4Lead (domenica.delia@ba.itb.cnr.it)
DrKristinaGruden* – WG5Lead (mailto:Kristina.Gruden@nib.si)
www.cost-charme.eu
* Presentandavailabletotalkwithyou
The COST Action CA15110
is supported by the EU Framework
Programme Horizon 2020
First Management Committee Meeting
Brussels, Belgium, 21/03/2016

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International Cooperation Experiences: Results Achieved, Lessons Learned, and...
 

Presentation-at-CHARME-Workshop-25-26Oct2016-ROME

  • 1. CHARME is supported by the EU Framework Programme Horizon 2020 COST Action Ca15110 CHARME-Harmonisingstandardisationstrategiesto increaseefficiencyandcompetitivenessof Europeanlifescienceresearch CombinedCHARME,EMBnet,NETTAB2016 Workshop COST Action CA15110 Domenica D’Elia
  • 2. CHARME is supported by the EU Framework Programme Horizon 2020 COST Action Ca15110 - WHAT - WHY - HOW THE CHARME ACTION
  • 3. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 About COST Mission “COST aims to enable breakthrough scientific developments leading to new concepts and products. It thereby contributes to strengthening Europe’s research and innovation capacities“ To achieve its mission, COST endeavors to: - Build capacity by connecting high-quality scientific communities in Europe and worldwide - Provide networking opportunities - Increase research impact on policy makers, regulatory bodies and national decision makers as well as on the private sector The longest-running European framework for “European Cooperation in Science andTechnology”
  • 4. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 CHARME Countries March 2016 - April 2020 Supporters at proposal stage:  In total 64 supporters  23 EU countries  13 associated non-EU countries Current status:  28 countries signed forCHARME  2 pending for signature
  • 5. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 Why CHARME ?
  • 6. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 Problem of current life science research - 80-90% of the research data are not re-usable or accessible [1] - There is a crisis in data reproducibility [2] Reasons: Data are not shared via (public) repositories Appropriate metadata missing Information missing about experiments Data formats are not appropriate 1) DFG, German Research Foundation evaluation 2) Nature’s survey on reproducibility in research (Bakern M, Nature (533) (2016): 452-454
  • 7. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 Problem of current life science research  Standardisation Initiatives & Organisations are currently working largely independently from each other Source:modifiedfromapresentationofJ.Lonien,DIN
  • 8. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 Problem of current life science research  The available tools and legislation on standards and Standard Operating Procedures (SOPs) are still not: - Sufficiently comprehensive - Efficient - Harmonised - Adopted by the communities
  • 9. F A I R Modelling Data Integration Visualisation Data generation - Raw data Paper Plattforms Analysis Repositories LARGE SCALE SMALL SCALE SEEK OPENAIR SOURCE DATA PC, HOME SERVER INSTITUTIONALSERVER PUBLIC SERVER, CLOUDES EXPERIMENTAL DESIGN, STATISTIC MINIMAL SOP‘S EDUCATION FUNDER INDUSTRY FUNDER EDUCATION EDUCATION INDUSTRY S Y S T E M S L E V E L EDUCATION SOP‘SSOP‘S Training Training SOP‘S FORMATS? FORMATS? FORMATS ? FORMATS? FUNDER TrainingS T O R A G E L E V E L A N A LY S I S & P U B L I C A T I O N L E V E L Training Exploitation or Needs and requirements along the pipeline of acquisition of data to (re)use
  • 10. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 Destination of data We need to consider what are potential destinations of our data Repositories and Platforms e.g. SEEK, OpenAIRE, Data Journals Systems Biology approaches Integration and modeling Publications / Journals …and need to identify (minimal) requirements for respective standards and formats
  • 11. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 Where do we come from? CHARME is based on the work and outcomes of different European Initiatives (among others)
  • 12. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 AIM & primary objectives CHARME aims to bridge and combine the fragmented areas of the of various moves in the development of new norms and standards to achieve a breakthrough in standardisation efforts. CHARME will identify needs and gaps, teaming up with other initiatives and organisations to avoid duplication and overlap of standardisation activities. CHARME will develop a common, coordinated, long-term strategy, by active involvement of all stakeholders (from research, industry and policy), to successfully assimilate standards into the daily work-flow.
  • 13. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 WG 1 Community / Platform building Building a network of experts from academia and industry WG 2 Innovation and technology transfer Development of an Action Plan for quality manage- ment and standardization WG 3 Implementation Design, implementation, and incorporation of software solutions WG 4 Dissemination & Exploitation Development of a coherent implementation strategy WG 5 Education Knowledge transfer into educational purposes Management 5 interacting Working Groups
  • 14. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020  to involve the bioinformatics community  know each other  exchange ideas  involve in CHARME those of you that would be happy to join and collaborate Aims of CHARME in this workshop
  • 16. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 Contacts: Dr SusanneHollmann – Coordinatorof CHARME(shollman@uni-potsdam.de) DrErikBongcam-Rudloff* – Vice-Coordinatorof CHARME(erikbongcam@slu.se) Prof OsmanUgurSezerman – WG1Lead (ugur.sezerman@acibadem.edu.tr) Dr AndreasKremer – WG2Lead (mailto:andreas.kremer@ittm-solutions.com) ProfChrisEvelo* – WG3Lead (mailto:chris.evelo@maastrichtuniversity.nl) DrDomenicaD'Elia* – WG4Lead (domenica.delia@ba.itb.cnr.it) DrKristinaGruden* – WG5Lead (mailto:Kristina.Gruden@nib.si) www.cost-charme.eu * Presentandavailabletotalkwithyou
  • 17. The COST Action CA15110 is supported by the EU Framework Programme Horizon 2020 First Management Committee Meeting Brussels, Belgium, 21/03/2016