GEOTEC UJI and FOSTER project organized a training seminar in the context of GEO-C ESR titled “Open Science and European Open Access policies in H2020”.
The seminar took place in Castellon (Spain), Feb 12th from 9.30 to 14.00.
Open Science and European Access Policies in H2020 Reme Melero
GEOTEC UJI and FOSTER project organized a training seminar in the context of GEO-C ESR entitled “Open Science and European Open Access policies in H2020”.
The seminar took place in Castellon (Spain), Feb 12th from 9.30 to 14.00.
OpenAIRE webinar on Open Access in H2020 (OAW2016)OpenAIRE
OpenAIRE Webinar for project coordinators and researchers on Open Access to publications in H2020 - By Eloy Rodrigues and Pedro Principe (University of Minho, OpenAIRE Helpdesk & Training managers). Open Access Week 2016 initiatives.
Evolving Strategies for Open Access Implementation: Some Findings from the Op...OpenAIRE
A year an a half into its implementation, the EC post-grant funding initiative for FP7 projects run under the OpenAIRE2020 project is already producing some findings, both in the area of APC-based Gold Open Access and in providing support to APC-free Open Access journals and platforms. While exploring the rather fragmented Open Access landscape across Europe, this presentation will look into the evolution of the multiple parallel strategies for Open Access implementation under the light of the work carried out within this post-grant funding initiative. It's argued that a widespread progress will require support for the different co-existing strategies.
This presentation was delivered at the PUBMET2016 conference in Zadar, Croatia, http://pubmet.unizd.hr/
Open Science and European Access Policies in H2020 Reme Melero
GEOTEC UJI and FOSTER project organized a training seminar in the context of GEO-C ESR entitled “Open Science and European Open Access policies in H2020”.
The seminar took place in Castellon (Spain), Feb 12th from 9.30 to 14.00.
OpenAIRE webinar on Open Access in H2020 (OAW2016)OpenAIRE
OpenAIRE Webinar for project coordinators and researchers on Open Access to publications in H2020 - By Eloy Rodrigues and Pedro Principe (University of Minho, OpenAIRE Helpdesk & Training managers). Open Access Week 2016 initiatives.
Evolving Strategies for Open Access Implementation: Some Findings from the Op...OpenAIRE
A year an a half into its implementation, the EC post-grant funding initiative for FP7 projects run under the OpenAIRE2020 project is already producing some findings, both in the area of APC-based Gold Open Access and in providing support to APC-free Open Access journals and platforms. While exploring the rather fragmented Open Access landscape across Europe, this presentation will look into the evolution of the multiple parallel strategies for Open Access implementation under the light of the work carried out within this post-grant funding initiative. It's argued that a widespread progress will require support for the different co-existing strategies.
This presentation was delivered at the PUBMET2016 conference in Zadar, Croatia, http://pubmet.unizd.hr/
OpenAIRE Presentation @3AMconf - Supporting Research Analytics by OpenAIRE Us...OpenAIRE
Poster presentation at 3AM conference (Sept. 2016, Bucharest), by Dimitris Pierrakos, ATHENA Research & Innovation Center (poster co-authors: Jochen Schirrwagen, Bielefeld University; Pedro Príncipe, University of Minho).
OpenAIRE services and tools - presentation at #DI4R2016OpenAIRE
Presentation at Digital Infrastrctures for Research Conference 2016 (Sept. 30). Title: Open Access and Open Data in Horizon 2020: for Research managers and Project Coordinators, by Pedro Príncipe (University of Minho)
Chcete vědět víc? Mnoho dalších prezentací, videí z konferencí, fotografií i jiných dokumentů je k dispozici v institucionálním repozitáři NTK: http://repozitar.techlib.cz
Would you like to know more? Find presentations, reports, conference videos, photos and much more in our institutional repository at: http://repozitar.techlib.cz/?ln=en
Enabling better science - Results and vision of the OpenAIRE infrastructure a...Paolo Manghi
Enabling better science: presentation on the results and vision of the OpenAIRE infrastructure and RDA Publishing Data Services Working Group in this direction.
OpenAIRE-Connect: Open Science as a Service for repositories and research com...OpenAIRE
24X7 Presentation at the International Open Repositories 2017 Conference - Brisbane, 28 June. OpenAIRE-Connect project will introduce and implement the concept of Open Science as a Service (OSaaS) on top of the existing OpenAIRE infrastructure.
Webinar about the Open Access mandate of the EC for Horizon 2020 projects.
* Open revisited & Open Access
* OA policy development in H2020
* Open Access in Horizon 2020
* What does OpenAIRE offer?
* How can OpenAIRE help?
OpenAIRE Presentation @3AMconf - Supporting Research Analytics by OpenAIRE Us...OpenAIRE
Poster presentation at 3AM conference (Sept. 2016, Bucharest), by Dimitris Pierrakos, ATHENA Research & Innovation Center (poster co-authors: Jochen Schirrwagen, Bielefeld University; Pedro Príncipe, University of Minho).
OpenAIRE services and tools - presentation at #DI4R2016OpenAIRE
Presentation at Digital Infrastrctures for Research Conference 2016 (Sept. 30). Title: Open Access and Open Data in Horizon 2020: for Research managers and Project Coordinators, by Pedro Príncipe (University of Minho)
Chcete vědět víc? Mnoho dalších prezentací, videí z konferencí, fotografií i jiných dokumentů je k dispozici v institucionálním repozitáři NTK: http://repozitar.techlib.cz
Would you like to know more? Find presentations, reports, conference videos, photos and much more in our institutional repository at: http://repozitar.techlib.cz/?ln=en
Enabling better science - Results and vision of the OpenAIRE infrastructure a...Paolo Manghi
Enabling better science: presentation on the results and vision of the OpenAIRE infrastructure and RDA Publishing Data Services Working Group in this direction.
OpenAIRE-Connect: Open Science as a Service for repositories and research com...OpenAIRE
24X7 Presentation at the International Open Repositories 2017 Conference - Brisbane, 28 June. OpenAIRE-Connect project will introduce and implement the concept of Open Science as a Service (OSaaS) on top of the existing OpenAIRE infrastructure.
Webinar about the Open Access mandate of the EC for Horizon 2020 projects.
* Open revisited & Open Access
* OA policy development in H2020
* Open Access in Horizon 2020
* What does OpenAIRE offer?
* How can OpenAIRE help?
Presentation on OpenAIRE infrastruture, EC Open Access Mandate, Zenodo repository, and Open Access developments in South Region Countries; by Pedro Príncipe - University of Minho (OpenAIRE Region South Coordinator.
Repository Power: How Repositories can support Open Access Mandates (OR2015 O...OpenAIRE
OpenAIRE presentation at the Open Repositories Conference (OR2015), in Indianapolis, 10/Jun/2015 - Session - P4B: Supporting Open Scholarship and Open Science. Presented by Wolfram Horstmann (Univ. Goettingen) on behalf of the paper authors: Najla Rettberg, Jochen Schirrwagen, Pedro Principe, Eloy Rodrigues, José Carvalho, Paolo Manghi, Natalia Manola.
OpenAIRE webinar. Services and tools to support compliance; Open Science Help...OpenAIRE
Presentation on the services and tools, including the Open Science helpdesk and training materials, OpenAIRE provides to support the compliance to H2020 mandates (part of the webinar "H2020 policies on Open Access and Research Data" delivered on June 12, 2019)
Conference Opening Science to Meet Future Challenges, Warsaw, March 11, 2014, organized by Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw.
G. Tautkeviciene and I. Ceseviciute. Open Science in Horizon 2020: Open Aire ...Aidis Stukas
Access to scientific information accelerates research, discovery and economic development. For more than a decade libraries take part in the open access movement to develop an environment which provides access to scientific information. Open access stakeholders and experts are working together to achieve these aims. The presentation will elaborate on the infrastructure of open access which bridges the gap between academia and society by sharing research findings in new ways.
OpenAIRE is an initiative by the European Commission for an Open Access Infrastructure for Research in Europe to support open scholarly communication, Open Science and access to the research output of the European funded projects. The infrastructure of OpenAIRE supports the Open Science policy implemented in the programme Horizon2020 by the European Commission.
Similar to OpenAIRE services and tools for researchers/authors and projects (FOSTER workshop at University Jaume I) (20)
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Body fluids_tonicity_dehydration_hypovolemia_hypervolemia.pptx
OpenAIRE services and tools for researchers/authors and projects (FOSTER workshop at University Jaume I)
1. OpenAIRE services and tools
for researchers/authors and projects
Pedro Príncipe
pedroprincipe@sdum.uminho.pt
2. OPEN ACCESS
OpenAIRE implements the
EC requirements
& SUPPORTS THE OPEN DATA PILOT
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016
3. 3
OpenAIRE
Dec. 2009 - Nov. 2012
OpenAIREplus
Dec. 2011 – Dec. 2014
OpenAIRE2020
Jan. 2015 a Jun. 2018
From a pilot in FP7
to a key service in H2020
4. Guided by OA funder
policies (European
Commission)
Participatory
approach (human &
e-infrastructure)
Integrated Scientific
Information System
Project & Infrastruture…
4
5. OpenAIRE’s e-infrastructure Commons
Publications
repositories
Research Data
repositories
CRIS
systems
Registries
(e.g. projects)
OA
Journals
Software
Repositories
Validation
Cleaning De-duplication
Enrichment
By inference
Funders, research admins,
research communities
• Research impact
• Research trends
• Open Access trends
Content providers
• Repository validation
• Repository notification broker
• Repository analytics and usage stats
Researchers
• Claim publications, datasets, software
• Deposit publications, datasets, software
• Search & browse: interlinked publications, datasets,
projects
• Open Access & DMP Helpdesk
• End-User feedback
Content Providers
Info Space Services
End-User Services
Project initiative
FunderFunding
Result
Publication Data Software
Organization
GUIDE
LINES
TERMS
OF USE
21. 21
18 WEBINARS in 2015
802 participants
4
for NOADS
(2 helpdesk,
1 Zenodo, 1 FP7
Post-Grant OA
Publishing
Funds)
142
participants
6
National
by NOADs: 3
Repositories, 2
FP7 Post-Grant
OA Pub. Funds,
1 H2020 Open
Data Pilot)
143
participants
3
H2020 OA
policy
168
participants
2
H2020 Open
Data Pilot &
ZENODO
103
participants
2
Repository
compliance
Guidelines for
Data
Providers
146
participants
1
FP7 Post-
Grant OA
Publishing
Funds
100
participants
23. Workshop
• European Workshop on Open Access and Data Sharing
• Ghent, November 2015
• Attended by more than 100 key stakeholders (project
coordinators, research administrators, NPRs, NCPs, NOADs)
23
www.vimeo.com/channels/openaireworkshop5
27. OpenAIRE PORTAL
TOOLS FOR COMPLIANCE
Are you supposed to deposit?
What to deposit >
Where to deposit >
When to deposit >
When should Open Access be provided
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016 27
2
28. Regardless of where you publish,
deposit the final manuscript or publisher’s PDF
in a repository, either institutional or disciplinary.
NB: It is not enough to list publications via a project website. They will go unnoticed!
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29. 1 2 3INSTITUTIONAL
REPOSITORY
of the research
institution with which
they are affiliated
SUBJECT/THEMATIC
REPOSITORY
ZENODO REPOSITORY
Centralised option set
up by the OpenAIRE
project and CERN
Depositing
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016 29
Through OpenAIRE they can be directed to: Publication repositories (OpenDOAR), Research Data
repositories (RE3DATA). If no repository is available: Zenodo at CERN (sponsored by OpenAIRE)
OpenAIRE harvests directly from a number of OpenAIRE compliant OA publishers and journal
aggregators.
30. LOCATE AN APPROPRIATED REPOSITORY
Deposit once!
Via OpenAIRE
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016 30
31. Find where to deposit
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016 31
32. Find where to deposit - DEMO
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016 32
41. USE OUR LINKING SERVICES AFTERWARDS AND
ASSOCIATE YOUR RESEARCH RESULTS
When you publish or deposit in OA
make sure you use a fully OpenAIRE
compatible repository. If you don't…
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016 41
5
42. LINK RESEARCH RESULTS TOOL
https://www.openaire.eu/participate/claim
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016
Link publication or datasets
to projets.
Identify the project, select
publications or datasets and
set the access rights.
43. LINK RESEARCH RESULTS - Demo
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016
44. STREAMLINES PROJECT REPORTING
OpenAIRE
We maintain a page for every EC (H2020, FP7) project,
featuring project information, related project
publications and datasets, and a statistics section.
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6
49. CAN'T FIND OR SEE ALL OF YOUR
PROJECT'S PUBLICATIONS IN
OPENAIRE AT REPORTING TIME?
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016 49
7
50. Linking research results
• 3 easy steps
• Identify projects (EC +)
• Find publications/data
• Set access rights
Publications and data to projects
53. YOUR PUBLICATIONS WILL BE REPORTED
AUTOMATICALLY TO THE EC'S PARTICIPANT
PORTAL AT REPORTING TIME.
Once you deposit in a fully
OpenAIRE compliant repository
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016 53
55. Discover and reuse
Research in context. Navigate and find related research entities.
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9
57. APPLY CLEANING, TRANSFORMATION,
DISAMBIGUATION PROCESSES, AND IDENTIFY
RELATIONSHIPS AMONG ALL RESEARCH ENTITIES
As we aggregate content from many
different sources, OpenAIRE can
Based on this enriched and linked information we are
able to produce aggregated statistics tailored to the
needs of any level research manager.
57
10
58. Statistics and monitoring
• Individual statistics
• Project, publication/data (usage), author (see demo)
• Aggregated statistics for
• Funding agency, programme, scientific area, country, institution
• OA evaluation
• Advanced statistics based on content classification and
clustering
• We welcome special requests – work in progress
Universitat Jaume I :: GEO-C / FOSTER workshop :: 12 Feb. 2016 58
62. Infrastructure for Open Knowledge
• Foster and facilitate the
shift of scholarly
communication towards
making science Open and
Reproducible
• Collaborative and
participatory approach at
European and Global level
Research
communities
Research
admins
Researchers
Funders
SMEsContent providers in
scholarly communication
Neworking &
e-Infrastructure
63.
64. Research data in OpenAIRE…
OPEN RESEARCH
DATA PILOT
in Horizon 2020
64
65. Open Research Data Pilot
• HORIZON 2020 GUIDELINES
• INFORMATION ABOUT THE PILOT AT THE OPENAIRE WEBSITE
• OPEN RESEARCH DATA PILOT
• CREATE A DATA MANAGEMENT PLAN
• SELECT A DATA REPOSITORY
• OPENAIRE BRIEFING PAPER
• OPENAIRE FACTSHEETS
• WEBINAR OPEN RESEARCH DATA PILOT AND ZENODO
• WORKSHOP PRESENTATION ABOUT RDM
• POSTCARD
• FAQS
Overview of the OpenAIRE support info
65
66. Open Research Data Pilot
• Open Research Data Pilot: https://www.openaire.eu/opendatapilot
• Create a Data Management Plan: https://www.openaire.eu/opendatapilot-dmp
• Select a Data Repository: https://www.openaire.eu/opendatapilot-repository
• Factsheet: https://www.openaire.eu/or-data-pilot-factsheet
Useful links to the support information available on the OpenAIRE portal:
66
68. Linking data and publications
• From a data-centric perspective publications are part of a
dataset’s context. However, there is no need to include
publications in the replication package:
• A lot of data repositories also accept publications, and allow
linking between publications and their underpinning data.
• By means of smart, persistent identifiers – consistently used –
linking is also possible across repositories.
68
69. In several domains there are indications that publications WITH links to data
receive more citations than papers WITHOUT data links.
This study in astrophysics is a recent example.
78. FP7 projects: publications + datasets
HYPOX > https://www.openaire.eu/search/project?projectId=corda_______::abb5725eaf2617c39ae240b4ce1cce3e
78
Open Access funded Publications
aggregated from repositories & journals
Datasets from Data
Repositories
79. Requirements Open Data Pilot
79
Data Management Plan required within six
months after project grant
Deposit your data in a research data repository
Open data is data that is free to access and
reuse: Creative Commons Licence CC-BY or CC0
80. How to write a DMP
• Template available from https://dmponline.dcc.ac.uk/
•
• And from a few national DMPonline sites, e.g. in Spain and Belgium
See https://www.openaire.eu/opendatapilot-dmp - Spain: http://pgd.consorciomadrono.es/ - Belgium - forthcoming 80
1
84. 84
Briefly specify
• how data will be captured/created
• how it will be documented
• according to what standards
• who will be able to access it
• where it will be stored
• how it will be backed up, and
• where and how it will be shared and
preserved long-term
87. Deliver the DMP
• Send the initial DMP version to the Commission within six months.
• EC: “Since DMPs are expected to mature during the project, more
developed versions of the plan can be included as additional deliverables
at later stages. (…) New versions of the DMP should be created whenever
important changes to the project occur due to inclusion of new data sets,
changes in consortium policies or external factors.”
87
88. Template mid-term review DMP
Broad notions: the data and associated metadata should be managed in a way
that allows for future reuse
88
90. Let’s recall the goal:
• Open access to research data refers to the right to
access and re-use digital research data. Openly
accessible research data can typically be accessed,
mined, exploited, reproduced and disseminated
free of charge for the user.
• The use of a Data Management Plan (DMP) is
required for projects participating in the Open
Research Data Pilot, detailing what data the project
will generate, whether and how they will be
exploited or made accessible for verification and re-
use, and how they will be curated and preserved.
http://ec.europa.eu/research/participants/data/ref/h2020/grants_manual/hi/oa_pilot/h2020-hi-oa-data-mgt_en.pdf 90
91. Negative intermezzo
• Stored data is not in itself “curated and preserved”
• Preserved (or: archived) data is not in itself findable
• Findable data is not in itself accessible
• Accessible data is not in itself understandable
• Understandable data is not in itself usable
91
What should be archived for
long-term reuse is a package
of data + context:
92. What should be deposited?
• The data needed to validate results in scientific publications (minimally!).
• The associated metadata: the dataset’s creator, title, year of publication, repository,
identifier etc.
• Follow a metadata standard in your line of work, or a generic standard, e.g. Dublin Core or
DataCite. Standards are important for discovering and exchanging data.
• The repository will assign a persistent ID to the dataset: important for discovering and citing...
• Documentation like code books, lab journals, informed consent forms – domain-dependent, and
important for understanding the data and combining them with other data sources.
• Software, hardware, tools, syntax queries, machine configurations – domain-dependent, and
important for really using the data. (Alternative: information about the software etc.)
Basically, everything that is needed to replicate a study should be available for others.
92
93. Repository, archive...
• A pilot requirement is to “deposit your data in a research data
repository”: a digital archive collecting and displaying datasets and their
metadata.
• Select a data repository that will preserve your data, metadata and
possibly tools in the long term.
• It is advisable to contact the repository of your choice when writing the first
version of your DMP.
• Repositories may offer guidelines for sustainable data formats and metadata
standards, as well as support for dealing with sensitive data and licensing.
But how to find a repository?
93
96. Main criteria for choosing a data repository:
• Certification as a ‘Trustworthy Digital Repository’, with an explicit
ambition to keep the data available in the long term.
• Matches your particular data needs: e.g. formats accepted; mixture of
Open and Restricted Access.
• Gives your submitted dataset a persistent and globally unique identifier:
for sustainable citations – both for data and publications – and to link
back to particular researchers and grants.
• Provides guidance on how to cite the data that has been deposited.
How to select a repository?
https://www.openaire.eu/opendatapilot-repository 96
97. Storage and Trust
• Local storage facilities during the research
• Network of trustworthy digital repositories for long-term preservation of (a
selection of) the data after the research is finished
• Certification of digital repositories in order to establish trust
• 4 certification standards available
98. Where to find a repository?
1. an external data archive or repository in your research domain
2. an institutional research data repository, or your research group’s
established data management facilities
1. Zenodo.org
2. or search for other data repositories at re3data.org
98
99. • re3data.org is a global registry of research data
repositories
• different academic disciplines
• It presents repositories for the permanent storage and
access of data sets
• Funded by the German Research Foundation (DFG)
• 2015: 1,368 reviewed repositories
99
I am going to guide you briefly through the main services that the OpenAIRE project offers for projects. This presentation will focus on the tools that will be of importance to you as researchers, research managers, project coordinators, so mainly tools that will make compliance with the OA publications.
I am going to guide you briefly through the main services that the OpenAIRE project offers for projects. This presentation will focus on the tools that will be of importance to you as ncps, research managers, project coordinators, so mainly tools that will make compliance with the OA publications.
I will highligth ten services/tools on how openaire can help research managers, ncps, project coordinator... Researchs that are participating in a H2020 project
OpenAIRE supports the various Open Access policies in the European Research Area. OpenAIRE offers a variety of resources if you want to know more about the EC’s Open Access Mandate and Open Data Pilot.
OpenAIRE supports the various Open Access policies in the European Research Area. OpenAIRE offers a variety of resources and support info materials, and if you still have questions – helpdesk.
STILL HAVE QUESTIONS? Ask our experts
If you cannot find an answer to your question, please contact us through our helpdesk.
STILL HAVE QUESTIONS? Ask our experts
Approach: deposit once – easy for researchers/research managers – and openaire will offer services.
If a researcher isn’t sure where to deposit , OPenAIRE can help.
If a researcher isn’t sure where to deposit , OPenAIRE can help.
Find also OpenAIRE validated repositories in the list of data providers – almost 700 providers.
Easy to use, easy to identify the project info in the metadata record.
This is stated in the AO H2020 mandate, OpenAIRE is helping to make it easy.
Example: zenodo
Example: Uminho repositor.
Alternative: claim a Publications and link it to the project info.
OpenAIRE portal have a specific page for each funded project!
You can also incorporate this publication list on your project website (better than adding pdfs)
A final useful tool resulting from the linking, is the facilitation of project reporting.
Once the research is deposited, it should be linked to the project information . This happens automatically, but it’s better if you check manually!
You can link data, publications and author IDs to each other , thus creating a mini CRIS system.
The linking of publications and data to project information is very useful during reporting time. You can do this manually by identifying your project and claim the related research output.
Three ways of linked:
- automatic: metadata (DC)
Automatic/experimental TDM procedures (FP7, wellcome, H2020, FCT)
Manual: Claiming
Mistakes are possible !
Claiming is not automatically done (there is also a delay).
Also to be used by participants portal reporting tool For publications accessible via OpenAIRE, references to these publications (with link to the project ID) are displayed automatically in the reporting section of the Participant Portal for the project. Simply check if the references are directly linked to the work performed within the project. If so, tick these publications as relevant and they will then be included in the table of publications when the report is generated.links and federates existing repositories. As such it provides access to publications that have been deposited in all repositories that are technically interoperable with OpenAIRE ("OpenAIRE compliant")
http://ec.europa.eu/research/participants/docs/h2020-funding-guide/grants/grant-management/reports/periodic-reports_en.htm
A final feature from the portal is the statistics and monitoring, on individual and aggregated levels.
We welcome special requests !
Very useful to check OA numbers etc when meeitng with project coordinators
Question about opting out projects?
Question about opting out projects?
“consistently used”: as in many situations this is to a small extent a technical matter: to a larger extent it depends on organising, agreements, and people citing reponsibly. So, if you are in a position to stimulate this, please do so.
On top of this, the OpenAIRE project investigates and improves automatic linking, also often via the PID.
392 datasets from PANGAEA AND 52 Publications from:
Unknown Repository (30)Biogeosciences (BG) (11)Biogeosciences (7)Biogeosciences Disc... (6)OceanRep (6)Ocean Science (OS) (4)Europe PubMed Central (3)Open Repository and... (2)Electronic Publicat... (2)NERC Open Research ... (2)Ocean Science Discu... (1)PLoS ONE (1)Ocean Science (OS) (1)e-Prints Soton (1)University of South... (1)Research@StAndrews:... (1)ArchiMer - Institut... (1)Earth-prints Reposi... (1)Archive ouverte UNIGE (1)Ghent University Ac... (1)
392 datasets
Second, you can select your organisation, but no problem if it’s not on the list. Note that ou may also find projects here, such as ELIXIR for life sciences.
You may want to include the guidance provided by the DCC. This is a good addition to the guidance that the EC provides on the questions of the template.
Next, click CREATE.
You’re asked to provide some basic information. Please note that the ID here is one that you enter yourself, for your convenience. I’ll show you in a second where I did this.
This page summarises that the DMP is a deliverable to be submitted within 6 months into the project. Below the orange bar it lists the topics of the initial DMP.
You’re asked to provide some basic information. Please note that the ID here is one that you enter yourself, for your convenience and that of your collaborators.
In this way the researcher proceeds to write the plan – more details follow in a second, but let’s first look ahead:
…and select an export format; for the EC PDF is fine.
The DMP is a deliverable/milestone to be delivered in the first 6 months AFTER the start of the project. The project officer and reviewers will ask for it, will evaluate it and give it a mark like any other deliverable (excellent, good, needs revision, rejected). This usually happens at the first review, unless the Project Officer is quite meticulous.
In subsequent reviews (or any time they feel like) the PO and reviewers may check to see if the DMP is followed (e.g., data files deposited, access status, metadata format, ...).
And make sure that you know what will be asked of you for the mid-term and the final review: the focus here is on enabling reuse of your data – by your future self and others.
In a couple of minutes I’ll tell you why this is a bit underspecified.
Okay, this is the easy part: there is a template. What’s really at stake of course is: what to write in the plan, and who should be involved?
The process of planning is also a process of communication, increasingly important in interdisciplinary / multi-partner research. Collaboration will be more harmonious if project partners (in industry, other universities, other countries…) are in accord.
Open Science encourages – and indeed requires – heterogeneous stakeholder groups to work together for a shared societal goal.
It’s worth bearing in mind that RDM and DMP are similarly hybrid activities, involving multiple stakeholder types…
The principal investigator (usually ultimately responsible for data)
Research assistants (may be more involved in day-to-day data management)
Ideally, they have a FO in the institute and/or in the domain: Library/IT/Legal/Funding office (The library may issue PIDs, or liaise with an external service who do this, e.g. DataCite. The funding office may have a compliance role)
And the FO ideally relies on back-office services, such as long-term archives and high-capacity data transfer.
Partners based in other institutions
Commercial partners
Publishers
etc
Many of us have a role in the FO or the BO: hand raising!!
Remember, we are still in the early stage of a project,
Re Software etc: in many cases copyright will prevent the archiving of software and tools. The alternative is a sensible description.
More about this in the break-out session after the lunch break…
http://www.veryicon.com/icons/object/package-icons/packageicon-zip.html
Proper data management won’t prevent theft of your laptop, but will help you to keep your data safe – even if they are not meant to go public.
Certification as a ‘trustworthy digital repository’, with an explicit ambition to keep the data available in the long term. We know of course that several domains have longstanding archives that are not certified as TRD, because they are unsure how much effort a certification process entails. We think that’s a pity. … three-tiered proces... And the Open Science, Open Access, Open Data effort should really encourage the willing repositories to apply for certification.
Matches your particular data needs (e.g. formats accepted; access, back-up and recovery, and sustainability of the service). Most of this information should be contained within the data repository’s policy pages.
Gives your submitted dataset a persistent and unique identifier: for sustainable citations – both for data and publications – and to link back to particular researchers and grants.
Lands visitors at the dataset or its metadata.
Helps to track how the data has been used by providing access and download statistics.
Offers clear terms and conditions that meet legal requirements (e.g. for data protection) and allow reuse without unnecessary licensing conditions.
Provides guidance on how to cite the data that has been deposited.
Elly will tell more about trustworthy repositories and also say a few words about storing data safely DURING the project, because that’s also part of data management.
mission to provide reliable, long-term access to managed digital resources to its designated community, now and into the future
constant monitoring, planning, and maintenance
understand threats to and risks within its systems
regular cycle of audit and/or certification
DIN 31644 / ISO 16363
Council for Science – World Data System (ICSU-WDS). Met deze certificering bevestigt WDS dat DANS betrouwbaar is als het gaat om: authenticiteit, integriteit, vertrouwenswaardigheid en beschikbaarheid van data en datadiensten.
Use an external data archive or repository already established for your research domain to preserve the data according to recognised standards in your discipline.
If available, use an institutional research data repository, or your research group’s established data management facilities.
Use a well-known data repository in your own country.
Use a cost-free (data) repository such as Zenodo.
Search for other data repositories here: re3data.org
If you dont have an appropriated repository use Zenodo - the catch-all repository hosted by CERN, is linked to OpenIARE and can be used to deposit research publications and data. Zenodo is of course harvested by the openaire portal
Zenodo is developed by CERN under the EU FP7 project OpenAIREplus