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Olga giraldo flashtalk_icbo2015

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Olga Ximena Giraldo
Olga Ximena Giraldo

Structuring experimental protocols by using ontologies and NLP tools to intelligently extract information.

Science
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Instrument Mortar and pestle Reagent Triton X-100 Sample   DNA   Cell disruption Grind the leaf tissueusing a mortar and pestle DNA purification Precipitate the DNA with 0.6 mL of 2-propanol. Goal: to accurately document and retrieve experimental protocols. Why: the protocols facilitate experimental reproducibility.
SEMI-STRUCTURED
How to represent the information from protocols as a knowledge base? …and NLP tools By using ontologies
…To find out more, visit our poster!

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Olga giraldo flashtalk_icbo2015

  • 1. Instrument Mortar and pestle Reagent Triton X-100 Sample   DNA   Cell disruption Grind the leaf tissueusing a mortar and pestle DNA purification Precipitate the DNA with 0.6 mL of 2-propanol. Goal: to accurately document and retrieve experimental protocols. Why: the protocols facilitate experimental reproducibility.
  • 3. How to represent the information from protocols as a knowledge base? …and NLP tools By using ontologies
  • 4. …To find out more, visit our poster!