Network biology: A crash course on STRING and Cytoscape

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This document provides an overview of STRING and Cytoscape, two tools for network biology. STRING collects known and predicted protein-protein interactions from various databases and assigns them confidence scores, addressing issues like varying quality and identifier formats across databases. Cytoscape is a software for visualizing and analyzing large networks that are not feasible to analyze directly from databases, and includes a STRING App to work with STRING data.

Network biology
A crash course on STRING and
Cytoscape
Lars Juhl Jensen

von Mering et al., Nucleic Acids Research, 2005

Acknowledgments
Damian Szklarczyk
John "Scooter" Morris
Helen Cook
Michael Kuhn
Stefan Wyder
Milan Simonovic
Alberto Santos
Nadezhda Doncheva
Alexander Roth
Peer Bork
Christian von Mering

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