1. The document describes a new catalyst (1) that promotes the kinetic resolution of racemic alcohols through enantioselective acylation at ambient temperature. Using just 5 mol% of the catalyst results in recovery of optically active alcohols with 92-99% ee.
2. Investigation of the reaction mechanism suggests catalyst 1 acts through an "induced fit" mechanism like natural enzymes. NMR studies show the catalyst exists in an "open conformation" that is catalytically active, but transforms to a "closed conformation" in the reactive intermediate that controls stereoselectivity.
3. The design of catalyst 1 places stereocontrolling chiral centers far from the active site to avoid comprom
Deciphering reaction mechanism with intermediate trappingDaniel Morton
This module provides an overview of a tool used to gain information on a reaction mechanism; reactive intermediate trapping.
A reactive intermediate is a short-lived, high-energy, highly reactive molecule. When generated in a chemical reaction, it will quickly convert into a more stable molecule. When their existence is indicated, reactive intermediates can help explain how a chemical reaction takes place.
Contributed by:
Shuangyu Ma & Yiling Bi (Undergraduate Students)
University of Utah
2014
Novel creation of 3-contiguous stereocenters via a patented an asymmetric catalytic process utilizing Titanium and Zinc, in conjunction with either oxygen or peroxides.
Deciphering reaction mechanism with intermediate trappingDaniel Morton
This module provides an overview of a tool used to gain information on a reaction mechanism; reactive intermediate trapping.
A reactive intermediate is a short-lived, high-energy, highly reactive molecule. When generated in a chemical reaction, it will quickly convert into a more stable molecule. When their existence is indicated, reactive intermediates can help explain how a chemical reaction takes place.
Contributed by:
Shuangyu Ma & Yiling Bi (Undergraduate Students)
University of Utah
2014
Novel creation of 3-contiguous stereocenters via a patented an asymmetric catalytic process utilizing Titanium and Zinc, in conjunction with either oxygen or peroxides.
Raman study of the polarizing forces promoting catalysis in 4 chlorbenzoyl-co...John Clarkson
J. Clarkson, P.J. Touge, K.L. Taylor, D. Dunaway-Mariano & P.R. Carey, “Raman Study of the Polarizing Forces Promoting Catalysis in 4-Chlorbenzoyl-CoA Dehalogenase”, Biochemistry, 36, 10192-10199, 1997.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
2. the naphthalene ring and the pyridine ring lie apart from each
other. Protons Ha and Hb are indistinguishable and appear at δ
8.01 ppm. Similarly, protons Hc and Hd appear at δ 6.37 ppm.
These observations indicate free rotation of the N(2)-C(1′) bond
and no significant interactions between the naphthalene ring and
the pyridine ring. The N-acyliminium ion (B) is assumed to
be the reactive intermediate in the catalytic cycle and was
alternatively formed by mixing 1 and isobutyryl chloride in a
1:1 ratio in CDCl3. Protons Ha, Hb, Hc, and Hd appear
independently at δ 7.45, 8.73, 5.69, and 6.87 ppm, respectively.
The significant upfield shift (0.56-0.68 ppm) of Ha and Hc as
well as the downfield shift (0.50-0.72 ppm) of Hb and Hd
indicate π-π interaction between the naphthalene ring and the
acylpyridinium moiety. We refer to this conformation as a
“closed conformation”. Informative NOEs were observed
between Hb and the proton, N+COCH(CH3)2, which imply that
the si face of the carbonyl group is blocked by the naphthalene
ring and the re face is open for reaction with alcohols.
The mechanism of the asymmetric acylation catalyzed by 1
is proposed. Catalyst 1 exists in an “open conformation” (A)
in its ground state, which is free from steric interaction at the
active site. Thus, a facile reaction takes place with acid
anhydride. The resulting “closed conformation” of intermediate
B is suitable for controlling the π-facial reactivity of its
N-acyliminium moiety, which directs the enantioselectivity of
the subsequent acylation of alcohols. The reorganization of the
catalyst triggered by binding of the specific substrate (acid
anhydride) is referred to as an “induced-fit” process, which is
currently recognized as a key process in enzymatic catalysis.
As shown in Table 1 entries 3-6, the enantioselectivity of the
reaction increases in proportion to the electron-donating ability
of the aromatic part of the substrates. This suggests the
participation of additional π-π interaction between the 4-ami-
nopyridinium π-system of B and the aromatic ring of the
substrates, which is shown as C (Figure 2). The π-π
interaction would regulate the direction of the substrate ap-
proach. The total catalytic process would result from coopera-
tive and consecutive events at the active site (pyridine nitrogen),
the stereocontrolling site (naphthalene moiety), and the binding
site (4-aminopyridinium π-system). Although the proposed
mechanism is speculative, it is worth noting that catalyst 1 has
similar properties as enzymes have acquired only after a long
history of evolution.
In summary, we have developed a catalyst 1 for the kinetic
resolution of racemic alcohols.11 A distinctive feature of 1 is
its catalyst design based on attractive interaction in nonorga-
nometallic species,12,13 which is in contrast to the conventional
design of catalysts based on repulsive steric interaction in the
coordination sphere of the central metal. Catalyst 1 is also
expected to catalyze several other types of asymmetric reactions,
since PPY (or 4-(dimethylamino)pyridine) has already been
shown to catalyze such reactions as peptide bond formation,
carbon acylation, and lactonization.6,14
Supporting Information Available: Experimental details for
preparation of 1 and 5, characterization data for 1, 5, 6a-f, and 8-11,
HPLC assay methods for enantiomers of 5, 6a-f, and 8-11, NOE
data for 1 and its acyliminium ion, and the methods for determination
of the absolute configuration of 6a-f, 8, and 9 (38 pages). See any
current masthead page for ordering and Internet access instructions.
JA963275G
(11) After completion of this work, papers describing kinetic resolution
of racemic alcohols by organometallic catalysts have been published: (a)
Ruble, J. C.; Fu, G. C. J. Org. Chem. 1996, 61, 7230. (b) Oriyama, T.;
Hori, Y.; Imai, K.; Sasaki, R. Tetrahedron Lett. 1996, 37, 8543.
(12) Attractive interaction has been claimed2a and recently utilized for
the design of chiral catalysts: (a) Corey, E. J.; Loh, T.-P. J. Am Chem.
Soc. 1991, 113, 8966. (b) Hawkins, J. M.; Loren, S. J. Am. Chem. Soc.
1991, 113, 7794.
(13) For a recent example of nonorganometallic chiral catalysts, see: Iyer,
M. S.; Gigstad, K. M.; Namdev. N. D.; Lipton, M. J. Am. Chem. Soc. 1996,
118, 4910.
(14) Scriven, E. F. V. Chem. Soc. ReV. 1983, 12, 129.
Table 1. Kinetic Resolution of Alcohols 6 and 8-11 with Catalyst 1a
entry substrateb
R
reaction
time (h)
conversion
(%)
recovery of
substrate (%)c
optical purity of
recovered substrate
(% ee)d
selectivitye
(s)
absolute
configurationf
1 6a i-Pr 5 69 27 76 4.3 (1R,2S)
2 6b t-Bu 4 68 27 94 8.3 (1R,2S)
3 6c p-O2NC6H4 5 73 23 54 2.4 (1R,2S)
4 6d Ph 5 71 26 81 4.5 (1R,2S)
5 6e p-MeOC6H4 2 70 27 85 5.3 (1R,2S)
6 6f p-Me2NC6H4 3 72 22 >99 >10.1 (12.3)g
(1R,2S)
7h 6f p-Me2NC6H4 5 68 25 93 7.7 (1R,2S)
8 8 p-Me2NC6H4 4 71 23 97 8.3 (1S,2R)
9 9 p-Me2NC6H4 4 70 24 92 6.5 (1R,2S)
10 10 p-Me2NC6H4 5 73 21 92 5.8 i
11 11 p-Me2NC6H4 4 77j 19 92 4.7 i
a Substrate (0.5 mmol) was treated with 0.7 molar equiv of isobutyric anhydride and 5 mol % of catalyst 1 in 3 mL of toluene at ambient
temperature, unless otherwise stated. b
Racemic cis substrates were used. c
Isolated yield. Theoretical maximum yield in a kinetic resolution is
50%. d
Ee was determined by HPLC analysis with chiral columns. See Supporting Information in detail. e
Ratio of rate constants for the more
reactive to the less reactive enantiomer calculated according to ref 4. f
Absolute configuration was determined by the chemical correlation with
configurationally defined monoacetate of the diols. See Supporting Information in detail. g
At 65% conversion, the recovered substrate (31% yield)
showed 97% ee, which corresponds to s ) 12.3. h
0.5 mol % of catalyst 1 was used. i
Not determined. j
Isobutyric anhydride (0.8 molar equiv) was
used.
Figure 2. Possible assembly of acyliminium intermediate (B) and 6f.
3170 J. Am. Chem. Soc., Vol. 119, No. 13, 1997 Communications to the Editor