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BIBLIOGRAPHY
Completed publications in peer-reviewed journals
[1] Sahiner B, Yagle AE, "Image reconstruction from projections under wavelet constraints,"
IEEE Trans Signal Proc., 1993, 41:3579-3584.
[2] Sahiner B, Yagle AE, "A fast algorithm for backprojection with linear interpolation,"
IEEE Trans Image Proccess, 1993, 2:547-550.
[3] Sahiner B, Yagle AE, "Time-frequency distribution inversion of the Radon transform,"
IEEE Trans Image Process, 1993, 2:539-543.
[4] Sahiner B, Yagle AE, "Reconstruction from projections under time-frequency
constraints," IEEE Trans Med Imaging, 1995, 14:193-204.
[5] Sahiner B, Yagle AE, "Region-of-interest tomography using exponential radial sampling,
"IEEE Trans Image Process, 1995, 4:1120-1127.
[6] Chan HP, Wei D, Helvie MA, Sahiner B, Adler DD, Goodsitt MM, Petrick N,
"Computer-aided classification of mammographic masses and normal tissue: Linear
discriminant analysis in texture feature space," Phys Med Biol, 1995, 40:857-876.
[7] Wei D, Chan HP, Helvie MA, Sahiner B, Petrick N, Adler DD, Goodsitt MM,
"Classification of mass and normal breast tissue on digital mammograms: Multiresolution
texture analysis," Med Phys, 1995, 22:1501-1513.
[8] Chan HP, Lo SCB, Sahiner B, Lam KL, Helvie MA, "Computer-aided detection of
mammographic microcalcifications: Pattern recognition with an artificial neural
network," Med Phys, 1995, 22:1555-1567.
[9] Petrick N, Chan HP, Sahiner B, Wei D, "An adaptive density weighted contrast
enhancement filter for mammographic breast mass detection," IEEE Trans Med Imaging,
1996, 15:59-68.
[10] Sahiner B, Chan HP, Petrick N, Wei D, Helvie MA, Adler DD, Goodsitt MM, "Image
feature selection by a genetic algorithm: Application to classification of mass and normal
breast tissue on mammograms," Med Phys, 1996, 23:1671-1684.
[11] Petrick N, Chan HP, Wei D, Sahiner B, Helvie MA, Adler DD, "Automated detection of
breast masses on mammograms using adaptive contrast enhancement and tissue
classification," Med Phys, 1996, 23:1685-1696.
[12] Sahiner B, Chan HP, Petrick N, Wei D, Helvie MA, Adler DD, Goodsitt MM,
"Classification of mass and normal breast tissue: A convolution neural network classifier
with spatial domain and texture images," IEEE Trans Med Imaging, 1996, 15:598-610.
[13] Chan HP, Sahiner B, Petrick N, Helvie MA, Lam KL, Adler DD, Goodsitt MM,
"Computerized classification of malignant and benign microcalcifications on
mammograms: texture analysis using an artificial neural network," Phys Med Biol, 1997,
42:549-567.
[14] Wei D, Chan HP, Petrick N, Sahiner B, Helvie MA, Adler DD, Goodsitt MM, "False-
positive reduction technique for detection of masses on digital mammograms: global and
local multiresolution texture analysis." Med Phys, 1997, 24:903-914.
[15] Sahiner B, Chan HP, Petrick N, Helvie MA, Goodsitt MM, "Design of a high-sensitivity
classifier based on a genetic algorithm: Application to computer-aided diagnosis," Phys
Med Biol, 1998, 43:2853-2871.
Rev: 06/01/2016
[16] Chan HP, Sahiner B, Lam KL, Petrick N, Helvie MA, Goodsitt MM, Adler DD,
"Computerized analysis of mammographic microcalcifications in morphological and
texture feature spaces," Med Phys, 1998, 25:2007-2019.
[17] Sahiner B, Chan HP, Petrick N, Helvie MA, Goodsitt MM, "Computerized
characterization of masses on mammograms: the rubber band straightening transform and
texture analysis," Med Phys, 1998, 25:516-526.
[18] Chan HP, Sahiner B, Helvie MA, Petrick N, Roubidoux MA, Wilson TE, Adler DD,
Paramagul C, Newman JS, Gopal SS, “Improvement of radiologists’ characterization of
mammographic masses by computer-aided diagnosis: an ROC study,” Radiology, 1999,
212:817-827.
[19] Petrick N, Chan HP, Sahiner B, Helvie MA, “Combined adaptive enhancement and
region-growing segmentation of breast masses on digitized mammograms,” Med Phys,
1999, 26:1642:1654.
[20] Chan HP, Sahiner B, Wagner RF, Petrick N, “Classifier design for computer-aided
diagnosis: Effects of finite sample size on the mean performance of classical and neural
network classifiers,” Med Phys, 1999, 26:2654:2668.
[21] Gopal SS, Chan HP, Wilson TE, Helvie MA, Petrick N, Sahiner B, “A regional
registration technique for automated interval change analysis of breast lesions on
mammograms,” Med Phys, 1999, 26:2669:2679.
[22] Hadjiiski LM, Sahiner B, Chan HP, Petrick N, Helvie MA, “Classification of malignant
and benign masses based on hybrid ART2LDA approach,” IEEE Trans Med Imaging,
1999, 18: 1178-1187.
[23] Sahiner B, Chan HP, Petrick N, Wagner RF, Hadjiiski LM, “Feature selection and
classifier performance in computer-aided diagnosis: The effect of finite sample size,”
Med Phys, 2000, 27: 1509-1522.
[24] Hadjiiski LM, Chan HP, Sahiner B, Petrick N, Helvie MA, “Automated registration of
breast lesions in temporal pairs of mammograms for interval change analysis—local
affine transformation for improved localization,” Med Phys, 2001, 28(6): 1070-1079.
[25] Zhou C, Chan HP, Petrick N, Helvie MA, Goodsitt MM, Sahiner B, Hadjiiski LM,
“Computerized image analysis: Estimation of breast density on mammograms,” Med
Phys, 2001, 28(6): 1056-1069.
[26] Chan HP, Helvie MA, Petrick N, Sahiner B, Adler DD, Paramagul C, Roubidoux MA,
Blane CE, Joynt LK, Wilson TE, Hadjiiski LM, Goodsitt MM, “Digital mammography:
Observer performance study of effects of pixel size on radiologists' characterization of
malignant and benign microcalcifications,” Acad Radiol, 2001, 8:454-466.
[27] Sahiner B, Chan HP, Petrick N, Helvie MA, Hadjiiski LM, “Improvement of
mammographic mass characterization using spiculation measures and morphological
features,” Med Phys, 2001, 28(7): 1455-1465.
[28] Gurcan MN, Sahiner B, Chan HP, Hadjiiski LM, Petrick N, “Selection of an optimal
neural network architecture for computer-aided diagnosis: Comparison of automated
optimization techniques,” Med Phys, 2001, 28(9): 1937-1948.
[29] Sahiner B, Petrick N, Chan HP, Hadjiiski LM, Paramagul C, Helvie MA, Gurcan MN,
“Computer-aided characterization of mammographic masses: Accuracy of mass
segmentation and its effects on characterization,” IEEE Trans Med Imaging, 2001,
20(12): 1275-1284.
[30] Hadjiiski LM, Sahiner B, Chan HP, Petrick N, Helvie MA, Gurcan MN, “Analysis of
temporal changes of mammographic features: Computer-aided classification of malignant
and benign breast masses,” Med Phys, 2001, 28(11): 2309-2317.
Rev: 06/01/2016
[31] Paquerault S, Petrick N, Chan HP, Sahiner B, Helvie MA, “Improvement of
computerized mass detection on mammograms: Fusion of two-view information,” Med
Phys, 2002, 29(2): 238-247.
[32] Gurcan MN, Chan HP, Sahiner B, Hadjiiski LM, Petrick N, Helvie MA, “Optimal neural
network architecture selection: Improvement in computerized detection of
microcalcifications,” Acad Radiol, 2002, 9:420-429.
[33] Petrick N, Sahiner B, Chan HP, Helvie MA, Paquerault S, Hadjiiski LM, “Breast cancer
detection: Evaluation of a CAD mass detection algorithm with independent
mammographic cases,” Radiology, 2002, 224(1): 217-224.
[34] Gurcan MN, Sahiner B, Petrick N, Chan HP, Kazerooni EA, Cascade PN, Hadjiiski LM,
"Lung nodule detection on thoracic computed tomography images - Preliminary
evaluation of a computer-aided diagnosis system,” Med Phys, 2002, 29(11): 2552-2558.
[35] Chan HP, Goodsitt MM, Hadjiiski LM, Bailey JE, Klein K, Darner K, Sahiner B, "Effects
of magnification and zooming on depth perception in digital stereomammography: An
observer performance study" Phys Med Biol, 2003, 48(22): 3721-3734.
[36] Chan HP, Sahiner B, Hadjiiski LM, Petrick N. “Effect of imaging parameters on
computer analysis of mammograms,” Seminars in Breast Imaging, 2003; 5: 211-216.
[37] Sahiner B, Chan HP, Roubidoux MA, Helvie MA, Hadjiiski LM, Ramachandran A,
LeCarpentier GL, Nees A, Paramagul C, Blane CE, "Computerized characterization of
breast masses on 3-D ultrasound volumes," Med Phys, 2004, 31(4): 744–754.
[38] Wei J, Chan HP, Helvie MA, Roubidoux MA, Sahiner B, Hadjiiski LM, Zhou C,
Paquerault S, Chenevert T, Goodsitt MM, "Correlation between mammographic density
and volumetric fibroglandular tissue estimated on breast MR images," Med Phys, 2004,
31(4): 933–942.
[39] Helvie MA, Hadjiiski LM, Makariou E, Chan HP, Petrick N, Sahiner B, Lo SCB,
Freedman M, Adler D, Bailey J, Blane C, Hoff D, Hunt K, Joynt L, Klein K, Paramagul
C, Patterson S, Roubidoux MA, "A non-commercial CAD system for breast cancer
detection in screening mammograms achieves high sensitivity – A pilot clinical trial,"
Radiology 2004, 231: 208-214.
[40] Dodd LE, Wagner RF, Armato SG, McNitt-Gray MF, Beiden S, Chan HP, Gur D.
McLennan G, Metz CE, Petrick N, Sahiner B, Sayre J, “Assessment methodologies and
statistical issues for computer-assisted detection of lung nodules in computed
tomography: contemporary research topics relevant to the Lung Image Database
Consortium,” Academic Radiology, 2004, 11: 462-475.
[41] Goodsitt MM, Chan HP, Lydick JT, Gandra CR, Chen NG, Helvie MA, Bailey J,
Roubidoux MA, Paramagul C, Blane CE, Sahiner B, Petrick NA, “An observer study
comparing spot imaging regions selected by radiologists and a computer for an
automated stereo spot mammography technique,” Med Phys, 2004 31:1558-1567.
[42] Zhou C, Chan HP, Paramagul C, Roubidoux MA, Sahiner B, Hadjiiski LM, Petrick N,
“Computerized nipple identification for multiple image analysis in computer-aided
diagnosis,” Med Phys, 2004, 31: 2871-2882.
[43] Hadjiiski L, Chan HP, Sahiner B, Helvie MA, Roubidoux MA, Blane C, Paramagul C,
Petrick N, Bailey J, Klein K, Foster M, Patterson S, Adler D, Nees A, Shen J,
“Improvement of radiologists’ characterization of malignant and benign breast masses in
serial mammograms by computer-aided diagnosis: An ROC study,” Radiology, 2004,
233:255-265.
Rev: 06/01/2016
[44] Filev P, Hadjiiski LM, Sahiner B, Chan HP, Helvie MA, “Comparison of similarity
measures for the task of template matching of masses on serial mammograms,” Med
Phys, 2005, 32:515-529.
[45] Chan HP, Goodsitt MM, Helvie MA, Hadjiiski LM, Lydick JT, Roubidoux MA, Bailey
JE, Nees A, Blane CE, Sahiner B, “ROC study of the effect of stereoscopic imaging on
assessment of breast lesions,” Med Phys, 2005, 32: 1001-1009.
[46] Zhou C, Chan HP, Patel S, Cascade PN, Sahiner B, Hadjiiski L, Kazerooni EA,
“Preliminary Investigation of Computer-aided diagnosis of Pulmonary Embolism in 3D
Computed Tomographic Pulmonary Angiography (CTPA) Images,” Academic Radiology
2005, 12: 782-792.
[47] Ge Z, Sahiner B, Chan HP, Hadjiiski L, Cascade PN, Bogot N, Kazerooni EA, Wei J,
Zhou C, “Computer aided detection of lung nodules: False positive reduction using a 3D
gradient field method and 3D ellipsoid fitting,” Med Phys 2005, 32: 2443-2454.
[48] Wei J, Sahiner B, Hadjiiski L, Chan HP, Petrick N, Helvie MA, Roubidoux MA, Ge J,
Zhou C, “Computer Aided Detection of Breast Masses on Full Field Digital
Mammograms,” Med Phys 2005, 32: 2827-2838.
[49] Chan HP, Wei J, Sahiner B, Rafferty EA, Wu T, Roubidoux MA, Moore RH, Kopans
DB, Hadjiiski L, Helvie MA, “Computer-aided detection system for breast masses on
digital tomosynthesis mammograms – Preliminary experience,” Radiology, 2005, 237:
1075-1080.
[50] Hadjiiski L, Sahiner B, Chan HP, “Advances in computer-aided diagnosis for breast
cancer,” Current Opinion in Obstetrics and Gynecology 2006, 18:64–70.
[51] Sahiner B, Chan HP, Hadjiiski LM, Helvie MA, Paramagul C, Ge J, Wei J, Zhou C,
“Joint two-view information for computerized detection of microcalcifications on
mammograms,” Medical Physics 2006, 33: 2574-2585.
[52] Way TW, Hadjiiski LM, Sahiner B, Chan HP, Cascade PN, Kazerooni EA, Bogot N,
Zhou C, “Computer-aided Diagnosis of Pulmonary Nodules on CT scans: Segmentation
and Classification Using 3D Active Contours” Medical Physics 2006, 33: 2323:2337.
[53] Ge J, Sahiner B, Hadjiiski LM, Chan HP, Wei J, Helvie MA, Zhou C, “Computer Aided
Detection of Clusters of Microcalcifications on Full Field Digital Mammograms,”
Medical Physics 2006, 33: 2975-2988.
[54] Hadjiiski L, Sahiner B, Helvie MA, Chan HP, Roubidoux MA, Paramagul C, Blane C,
Petrick N, Bailey J, Klein K, Foster M, Patterson S, Adler D, Nees A, Shen J, “Computer-
Aided Diagnosis of Breast Cancer in Serial Mammograms,” Radiology 2006, 240: 343-
356.
[55] Zhang Y, Chan HP, Sahiner B, Wei J, Goodsitt MM, Hadjiiski LM, Ge J, Zhou C, “A
comparative study of limited-angle cone-beam reconstruction methods for breast
tomosynthesis,” Medical Physics 2006, 33:3781-3795.
[56] Wei J, Chan HP, Sahiner B, Hadjiiski LM, Helvie MA, Roubidoux MA, Zhou C, Ge J,
“Dual system approach to computer-aided detection of breast masses on mammograms,”
Medical Physics 2006, 33:4157-4168.
[57] Hadjiiski LM, Chan HP, Sahiner B, Helvie MA, Roubidoux MA, “Quasi-Continuous and
Discrete Confidence Rating Scales for Observer Performance Studies: Effects on ROC
Analysis”, Academic Radiology 2007, 14:38–48.
Rev: 06/01/2016
[58] Sahiner B, Chan HP, Roubidoux MA, Hadjiiski L, Helvie MA, Paramagul C, Bailey J,
Nees A, Blane C, “Computer-Aided Diagnosis of Malignant and Benign Breast Masses in
3D Ultrasound Volumes: Effect on Radiologists' Accuracy,” Radiology 2007, 242:716-
724.
[59] Ge J, Hadjiiski LM, Sahiner B, Chan HP, Wei J, Helvie MA, Zhou C, “Computer aided
detection system for clustered microcalcifications: Comparison of performance on full
field digital mammograms and digitized screen-film mammograms,” Physics in Medicine
and Biology 2007, 52:981:1000.
[60] Shi J, Sahiner B, Chan HP, Hadjiiski L, Zhou C, Cascade PN, Bogot N, Kazerooni EA,
Wu YT, Wei J, “Pulmonary Nodule Registration in Serial CT Scans Based on Rib
Anatomy and Nodule Template Matching,” Medical Physics 2007, 34:1336-1347.
[61] Yoon HJ, Zheng B, Sahiner B, Chakraborty DP, “Evaluating computer aided detection
(CAD) algorithms,” Medical Physics 2007, 34:2024:2038.
[62] Wei J, Hadjiiski L, Sahiner B, Chan HP, Ge J, Roubidox MA, Helvie MA, Zhou C, Wu
YT, Zhang Y, “Computer Aided Detection Systems for Breast Masses: Comparison of
Performances on Full-Field Digital Mammograms and Digitized Screen-film
Mammograms,” Academic Radiology 2007, 14:659-669.
[63] Zhang Y, Chan HP, Sahiner B, Wu YT, Zhou C, Ge J, Wei J, Hadjiiski LM, “Application
of boundary detection information in breast tomosynthesis reconstruction,” Medical
Physics 2007, 34:3603-3613.
[64] Wu YT, Wei J, Hadjiiski LM, Sahiner B, Zhou C, Ge J, Shi J, Zhang Y, Chan HP,
“Bilateral mammogram based computer-aided detection system for false positive
reduction,” Medical Physics 2007, 34: 3334-3344.
[65] Zhou C, Chan HP, Sahiner B, Hadjiiski LM, Chugtai A, Patel S, Wei J, Ge J, Cascade
PN, Kazerooni EA, “Automatic multiscale enhancement and hierarchical segmentation of
pulmonary vessels in CT pulmonary angiography (CTPA) images for CAD applications”,
Medical Physics 2007, 34: 4567-4577.
[66] Street E, Hadjiiski LM, Sahiner B, Gujar S, Ibrahim M, Mukherji SK, Chan HP,
“Automated Volume analysis of head and neck lesions on CT scans using 3D level set
segmentation,” Medical Physics 2007, 34: 4399-4408.
[67] Shi J, Sahiner B, Chan HP, Ge J, Hadjiiski LM, Helvie MA, Nees A, Wu YT, Wei J,
Zhou C, Zhang Y, Cui J, “Characterization of Mammographic Masses Based on Level
Set Segmentation with New Image Features and Patient Information,” Medical Physics
2008, 35: 280-290.
[68] Sahiner B, Chan HP, Hadjiiski LM, “Performance analysis of 3-class classifiers:
Properties of the 3D ROC surface and the normalized volume under the surface for the
ideal observer,” IEEE Transactions on Medical Imaging 2008, 27: 215-227.
[69] Sahiner B, Chan HP, Hadjiiski LM, “Classifier Performance Estimation Under the
Constraint of a Finite Sample Size: Resampling Schemes Applied to Neural Network
Classifiers,” Neural Networks 2008, 21: 476–483.
[70] Sahiner B, Chan HP, Hadjiiski LM, “Classifier performance prediction for computer-
aided diagnosis using a limited data set,” Medical Physics 2008, 35:1559-1570.
[71] Chan HP, Hadjiiski LM, Zhou C, Sahiner B, “Computer-Aided Diagnosis of Lung Cancer
and Pulmonary Embolism in Computed Tomography – A Review,” Academic Radiology
2008, 15: 535-555.
Rev: 06/01/2016
[72] Way TW, Chan HP, Goodsitt MM, Sahiner B, Hadjiiski LM, Zhou C, Chughtai A,
“Effect of CT scanning parameters on volumetric measurements of pulmonary nodules by
3D active contour segmentation: a phantom study,” Physics in Medicine and Biology
2008, 53: 1295-1312.
[73] Chan HP, Wei J, Zhang Y, Helvie MA Moore RH, Sahiner B, Hadjiiski L, Kopans DB,
“Computer-aided detection of masses in digital tomosynthesis mammography:
Comparison of three approaches,” Medical Physics 2008, 35: 4087-4095.
[74] Filev P, Hadjiiski L, Chan HP, Sahiner B, Ge J, Helvie MA, Roubidoux MA, Zhou C,
“Automated regional registration and characterization of corresponding
microcalcification clusters on temporal pairs of mammograms for interval change
analysis,” Medical Physics 2008, 35: 5340-5350.
[75] Cui J, Sahiner B, Chan HP, Nees AV, Paramagul C, Hadjiiski L, Zhou C, Shi J, “A new
automated method for the segmentation and characterization of breast masses on
ultrasound images,” Medical Physics 2009, 36:1553-1565.
[76] Sahiner B, Chan HP, Hadjiiski LM, Roubidoux MA, Paramagul C, Bailey JE, Nees AV,
Blane CE, Adler DD, Patterson SK, Klein KA, Pinsky RW, Helvie MA, ”Multi-modality
CADx: ROC study of the effect on radiologists' accuracy in characterizing breast masses
on mammograms and 3D ultrasound images,” Academic Radiology 2009, 16:810–818.
[77] Zhang Y, Chan HP, Sahiner B, Wei J, Zhou C, Hadjiiski L, “Artifact reduction methods
for truncated projections in iterative breast tomosynthesis reconstruction,” Journal of
Computer Assisted Tomography 2009, 33:426-435.
[78] Way T, Sahiner B, Chan HP, Hadjiiski L, Cascade PN, Chughtai A, Bogot N, Kazerooni
E, “Computer aided diagnosis of pulmonary nodules on CT scans: Improvement of
classification performance with nodule surface features,” Medical Physics 2009, 36:3086-
3098.
[79] Zhou C, Chan HP, Sahiner B, Hadjiiski LM, Chughtai AR, Patel S, Wei J, Cascade PN,
Kazerooni EA, “Computer-aided detection of pulmonary embolism in computed
tomographic pulmonary angiography (CTPA): Performance evaluation with independent
data sets,” Medical Physics 2009, 36:3385-3396.
[80] Wei J, Chan HP, Sahiner B, Zhou C, Hadjiiski L, Roubidoux MA, Helvie MA,
“Computer-aided detection of breast masses on mammograms: Dual system approach
with two-view analysis,” Medical Physics 2009, 36:4451-4460.
[81] Shi J, Sahiner B, Chan HP, Paramagul C, Hadjiiski LM, Helvie MA, Chenevert TL,
“Treatment response assessment of breast masses on dynamic contrast-enhanced
magnetic resonance scans using fuzzy c-means clustering and level set segmentation,”
Medical Physics 2009, 36:5052-5063.
[82] Sahiner B, Chan HP, Hadjiiski LM, Cascade PN, Kazerooni EA, Chughtai AR, Poopat C,
Song T, Frank L, Stojanovska J, Attili A, “Effect of CAD on radiologists’ detection of
lung nodules on thoracic CT scans: Analysis of an observer performance study by nodule
size” Academic Radiology 2009, 16:1518-1530.
[83] Wu YT, Zhou C, Chan HP, Paramagul C, Zhang Y, Hadjiiski LM, Sahiner B, Shi J, Wei
J, “Dynamic multiple thresholding breast boundary detection algorithm for
mammograms,” Medical Physics 2010, 37:391-401.
[84] Way T, Sahiner B, Hadjiiski LM, Chan HP, “Effect of finite sample size on feature
selection and classification: a simulation study,” Medical Physics 2010, 37:907-920.
Rev: 06/01/2016
[85] Way T, Chan HP, Hadjiiski L, Sahiner B, Chugtai A, Song TK, Poopat C, Stojanovska J,
Frank L, Attili A, Bogot N, Cascade PN, Kazerooni EA, “Computer-aided diagnosis of
lung nodules on CT scans: An observer study of its effect on radiologists’ performance,”
Academic Radiology 2010, 17:323-332.
[86] Hadjiiski L, Mukherji SK, Gujar S, Sahiner B, Ibrahim M, Street E, Moyer J, Chan HP,
“Head and neck cancers on CT: preliminary study of treatment response assessment
based on computerized volume analysis,” American Journal of Roentgenology 2010,
194:1083-1089.
[87] Zhou C, Wei J, Chan HP, Paramagul C, Hadjiiski LM, Sahiner B, Douglas J,
“Computerized image analysis: Texture-field orientation method for pectoral muscle
identification on MLO-view mammograms,” Medical Physics 2010, 37:2289-2299.
[88] Chan HP, Wu YT, Sahiner B, Wei J, Helvie MA, Zhang Y, Moore RH, Kopans DB,
Hadjiiski LM, Way T, “Characterization of masses in digital breast tomosynthesis:
comparison of machine learning in projection views and reconstructed slices,” Medical
Physics 2010, 37: 3576-3586.
[89] Hadjiiski LM, Mukherji SK, Gujar S, Sahiner B, Ibrahim M, Street E, Moyer J, Worden
FP, Chan HP, “Treatment response assessment of head and neck cancers on CT using
computerized volume analysis,” American Journal of Neuroradiology 2010, 31:1744-
1751.
[90] Cho, HC, Hadjiiski LM, Sahiner B, Chan HP, Helvie MA, Paramagul C, Nees AV,
“Similarity evaluation in a content-based image retrieval (CBIR) CADx system for
characterization of breast masses on ultrasound images,” Medical Physics 2011, 38:
1820-1831.
[91] Wei J, Chan HP, Zhou C, Wu YT, Sahiner B, Hadjiiski LM, Roubidoux MA, Helvie MA,
“Computer-aided detection of breast masses: Four-view strategy for screening
mammography,” Medical Physics 2011, 38: 1867-1876.
[92] Samuelson F, Gallas BD, Myers KJ, Petrick N, Pinsky P, Sahiner B, Campbell G,
Pennello GA, “The Importance of ROC Data,” Academic Radiology 2011, 18: 257-258.
[93] Wei J, Chan HP, Wu YT, Zhou C, Helvie MA, Hadjiiski LM, Sahiner B, “A pilot case-
control study for analyzing the association of computerized mammographic parenchymal
pattern (MPP) with breast cancer risk,” Radiology 2011, 260:42-49.
[94] Sahiner B, Chan HP, Hadjiiski LM, Helvie MA, Wei J, Zhou C, “Computer-aided
detection of clustered microcalcifications in digital breast tomosynthesis: A 3D
approach,” Medical Physics 2012, 39:28-39.
[95] Gallas BD, Chan HP, D'Orsi CJ, Dodd LE, Giger ML, Gur D, Krupinski EA, Metz CE
Myers KJ; Obuchowski NA, Sahiner B, Toledano AY, Zuley ML, “Evaluating Imaging
and Computer-aided Detection and Diagnosis Devices at the FDA,” Academic Radiology
2012, 19:463-477.
[96] Wang SJ, McKenna MT, Nguyen TB, Burns JE, Petrick N, Sahiner B, Summers RM,
"Seeing Is Believing: Video Classification for Computed Tomographic Colonography
Using Multiple-Instance Learning," IEEE Transactions on Medical Imaging 2012,31:
1141-1153.
[97] Chen W, Petrick N, Sahiner B, “Hypothesis Testing in Noninferiority and Equivalence
MRMC ROC Studies,” Academic Radiology 2012, 9:1158-1165.
Rev: 06/01/2016
[98] Gavrielides MA, Zeng R, Myers KJ, Sahiner B, Petrick N, “Benefit of Overlapping
Reconstruction for Improving the Quantitative Assessment of CT Lung Nodule Volume”,
Academic Radiology 2013, 20: 173-180.
[99] Cho, HC, Hadjiiski LM, Sahiner B, Chan HP, Helvie MA, Paramagul C, Nees AV, "A
similarity study of content-based image retrieval system for breast cancer using decision
tree," Medical Physics 2013, 40: 012901-1,13.
[100] Chen W, Samuelson FW, Gallas B, Kang L, Sahiner B, Petrick N, “On the assessment of
the added value of new predictive biomarkers,” BMC Med Res Methodol, 2013, 13:98.
[101] Huo, Z, Summers RM, Paquerault S, Lo J, Hoffmeister J, Armato SG, Friedman M, Lin J,
Lo SCB, Petrick N, Sahiner B, Fryd D, Yoshida H, Chan HP, “Quality Assurance and
Training Procedures for Computer-aided Detection and Diagnosis Systems,” Medical
Physics 2013, 40:077001.
[102] Petrick N, Sahiner B, Armato S, Bert A, Correale L, Delsanto S, Freedman M, Fryd D,
Gur D, Hadjiiski L, Hou Z, Jiang Y, Morra L, Paquerault S, Raykar V, Salganicoff M,
Samuelson F, Summers RM, Tourassi G, Yoshida H, Zheng B, Zhou C, Chan HP,
“Evaluation of Computer-Aided Detection and Diagnosis Systems,” Medical Physics
2013, 40:087001.
[103] Gavrielides MA, Li Q, Zeng R, Myers KJ, Sahiner B, Petrick N, “Minimum detectable
change in lung nodule volume in a phantom CT study,” Academic Radiology 2013,
20:1364-1370.
[104] He X, Sahiner B, Gallas, B, Chen W, Petrick N. “Computerized Characterization of Lung
Nodule Subtlety,” Physics in Medicine and Biology 2014, 59:897-910.
[105] Abbey CK, Gallas BD, Boone JM, Niklason LT, Hadjiiski LM, Sahiner B, Samuelson,
FW “Comparative statistical properties of expected utility and area under the ROC curve
for laboratory studies of observer performance in screening mammography,” Academic
Radiology 2014, 21:481-90.
[106] Samala RK, Chan H-P, Lu Y, Hadjiiski L, Wei J, Sahiner B, Helvie MA “Computer-
Aided Detection of Clustered Microcalcifications in Multiscale Bilateral Filtering
Regularized Reconstructed Digital Breast Tomosynthesis Volume,” Medical Physics
2014, 41(2):021901.
[107] He X, Samuelson F, Zeng R, Sahiner B, “Discovering intrinsic properties of human
observers' visual search and mathematical observers' scanning,” Journal of the Optical
Society of America, 2014, 31:2495-2510.
[108] Gavrielides MA, Li Q, Zeng R, Myers KJ, Sahiner B, Petrick N, “Volumetric analysis of
non-calcified lung nodules with thoracic CT: an updated review of related work over the
last 5 years,” Journal of Radiology & Radiation Therapy, 2014, 2(3): 1060.
[109] Li Q, Gavrielides MA, Zeng R, Myers KJ, Sahiner B, Petrick N, “Volume estimation of
low-contrast lesions with CT: a comparison of performances from a phantom study,
simulations and theoretical analysis,” Physics in Medicine and Biology, 2015, 60:671-
688.
[110] Li Q, Gavrielides MA, Sahiner B, Myers KJ, Zeng R, Petrick N, “Statistical analysis of
lung nodule volume measurements with CT in a large-scale phantom study,” Medical
Physics 2015, 42:3932-3947.
[111] Pezeshk A, Sahiner B, Zeng R, Wunderlich A, Chen W, Petrick N, "Seamless insertion of
pulmonary nodules in chest CT images," IEEE Transactions on Biomedical Engineering,
2015, 62:2812-2827.
Rev: 06/01/2016
[112] Wang SJ, Li D, Petrick N, Sahiner B, Linguraru MG, Summers RM, "Optimizing area
under the ROC curve using semi-supervised learning," Pattern Recognition, 2015,
48:276-287.
[113] Fauzi MFA, Pennell M, Sahiner B, Chen W, Shana'ah A, Hemminger J, Kurt H, Losos
M, Joehlin-Price A, Kavran C, Smith SM, Nowacki N, Mansoor S, Lozanski G, Gurcan
MN, “Classification of Follicular Lymphoma: The Effect of Computer Aid on
Pathologists Grading,” BMC Medical Informatics and Decision Making, 2015, 15:115.
[114] Gavrielides M, Li Q, Zeng R, Myers K, Sahiner B, Petrick N, “Volume estimation of
multi-density nodules with thoracic CT,” Journal of Medical Imaging, 2016, 013504-1-9.
[115] Zeng R, Gavrielides MA, Petrick N, Sahiner B, Li Q, Myers KJ, “Estimating Local Noise
Power Spectrum (NPS) from a Few FBP-reconstructed CT scans,” Medical Physics, 2016
43:568-582
Rev: 06/01/2016
[112] Wang SJ, Li D, Petrick N, Sahiner B, Linguraru MG, Summers RM, "Optimizing area
under the ROC curve using semi-supervised learning," Pattern Recognition, 2015,
48:276-287.
[113] Fauzi MFA, Pennell M, Sahiner B, Chen W, Shana'ah A, Hemminger J, Kurt H, Losos
M, Joehlin-Price A, Kavran C, Smith SM, Nowacki N, Mansoor S, Lozanski G, Gurcan
MN, “Classification of Follicular Lymphoma: The Effect of Computer Aid on
Pathologists Grading,” BMC Medical Informatics and Decision Making, 2015, 15:115.
[114] Gavrielides M, Li Q, Zeng R, Myers K, Sahiner B, Petrick N, “Volume estimation of
multi-density nodules with thoracic CT,” Journal of Medical Imaging, 2016, 013504-1-9.
[115] Zeng R, Gavrielides MA, Petrick N, Sahiner B, Li Q, Myers KJ, “Estimating Local Noise
Power Spectrum (NPS) from a Few FBP-reconstructed CT scans,” Medical Physics, 2016
43:568-582
Rev: 06/01/2016

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Journal Papers

  • 1. BIBLIOGRAPHY Completed publications in peer-reviewed journals [1] Sahiner B, Yagle AE, "Image reconstruction from projections under wavelet constraints," IEEE Trans Signal Proc., 1993, 41:3579-3584. [2] Sahiner B, Yagle AE, "A fast algorithm for backprojection with linear interpolation," IEEE Trans Image Proccess, 1993, 2:547-550. [3] Sahiner B, Yagle AE, "Time-frequency distribution inversion of the Radon transform," IEEE Trans Image Process, 1993, 2:539-543. [4] Sahiner B, Yagle AE, "Reconstruction from projections under time-frequency constraints," IEEE Trans Med Imaging, 1995, 14:193-204. [5] Sahiner B, Yagle AE, "Region-of-interest tomography using exponential radial sampling, "IEEE Trans Image Process, 1995, 4:1120-1127. [6] Chan HP, Wei D, Helvie MA, Sahiner B, Adler DD, Goodsitt MM, Petrick N, "Computer-aided classification of mammographic masses and normal tissue: Linear discriminant analysis in texture feature space," Phys Med Biol, 1995, 40:857-876. [7] Wei D, Chan HP, Helvie MA, Sahiner B, Petrick N, Adler DD, Goodsitt MM, "Classification of mass and normal breast tissue on digital mammograms: Multiresolution texture analysis," Med Phys, 1995, 22:1501-1513. [8] Chan HP, Lo SCB, Sahiner B, Lam KL, Helvie MA, "Computer-aided detection of mammographic microcalcifications: Pattern recognition with an artificial neural network," Med Phys, 1995, 22:1555-1567. [9] Petrick N, Chan HP, Sahiner B, Wei D, "An adaptive density weighted contrast enhancement filter for mammographic breast mass detection," IEEE Trans Med Imaging, 1996, 15:59-68. [10] Sahiner B, Chan HP, Petrick N, Wei D, Helvie MA, Adler DD, Goodsitt MM, "Image feature selection by a genetic algorithm: Application to classification of mass and normal breast tissue on mammograms," Med Phys, 1996, 23:1671-1684. [11] Petrick N, Chan HP, Wei D, Sahiner B, Helvie MA, Adler DD, "Automated detection of breast masses on mammograms using adaptive contrast enhancement and tissue classification," Med Phys, 1996, 23:1685-1696. [12] Sahiner B, Chan HP, Petrick N, Wei D, Helvie MA, Adler DD, Goodsitt MM, "Classification of mass and normal breast tissue: A convolution neural network classifier with spatial domain and texture images," IEEE Trans Med Imaging, 1996, 15:598-610. [13] Chan HP, Sahiner B, Petrick N, Helvie MA, Lam KL, Adler DD, Goodsitt MM, "Computerized classification of malignant and benign microcalcifications on mammograms: texture analysis using an artificial neural network," Phys Med Biol, 1997, 42:549-567. [14] Wei D, Chan HP, Petrick N, Sahiner B, Helvie MA, Adler DD, Goodsitt MM, "False- positive reduction technique for detection of masses on digital mammograms: global and local multiresolution texture analysis." Med Phys, 1997, 24:903-914. [15] Sahiner B, Chan HP, Petrick N, Helvie MA, Goodsitt MM, "Design of a high-sensitivity classifier based on a genetic algorithm: Application to computer-aided diagnosis," Phys Med Biol, 1998, 43:2853-2871. Rev: 06/01/2016
  • 2. [16] Chan HP, Sahiner B, Lam KL, Petrick N, Helvie MA, Goodsitt MM, Adler DD, "Computerized analysis of mammographic microcalcifications in morphological and texture feature spaces," Med Phys, 1998, 25:2007-2019. [17] Sahiner B, Chan HP, Petrick N, Helvie MA, Goodsitt MM, "Computerized characterization of masses on mammograms: the rubber band straightening transform and texture analysis," Med Phys, 1998, 25:516-526. [18] Chan HP, Sahiner B, Helvie MA, Petrick N, Roubidoux MA, Wilson TE, Adler DD, Paramagul C, Newman JS, Gopal SS, “Improvement of radiologists’ characterization of mammographic masses by computer-aided diagnosis: an ROC study,” Radiology, 1999, 212:817-827. [19] Petrick N, Chan HP, Sahiner B, Helvie MA, “Combined adaptive enhancement and region-growing segmentation of breast masses on digitized mammograms,” Med Phys, 1999, 26:1642:1654. [20] Chan HP, Sahiner B, Wagner RF, Petrick N, “Classifier design for computer-aided diagnosis: Effects of finite sample size on the mean performance of classical and neural network classifiers,” Med Phys, 1999, 26:2654:2668. [21] Gopal SS, Chan HP, Wilson TE, Helvie MA, Petrick N, Sahiner B, “A regional registration technique for automated interval change analysis of breast lesions on mammograms,” Med Phys, 1999, 26:2669:2679. [22] Hadjiiski LM, Sahiner B, Chan HP, Petrick N, Helvie MA, “Classification of malignant and benign masses based on hybrid ART2LDA approach,” IEEE Trans Med Imaging, 1999, 18: 1178-1187. [23] Sahiner B, Chan HP, Petrick N, Wagner RF, Hadjiiski LM, “Feature selection and classifier performance in computer-aided diagnosis: The effect of finite sample size,” Med Phys, 2000, 27: 1509-1522. [24] Hadjiiski LM, Chan HP, Sahiner B, Petrick N, Helvie MA, “Automated registration of breast lesions in temporal pairs of mammograms for interval change analysis—local affine transformation for improved localization,” Med Phys, 2001, 28(6): 1070-1079. [25] Zhou C, Chan HP, Petrick N, Helvie MA, Goodsitt MM, Sahiner B, Hadjiiski LM, “Computerized image analysis: Estimation of breast density on mammograms,” Med Phys, 2001, 28(6): 1056-1069. [26] Chan HP, Helvie MA, Petrick N, Sahiner B, Adler DD, Paramagul C, Roubidoux MA, Blane CE, Joynt LK, Wilson TE, Hadjiiski LM, Goodsitt MM, “Digital mammography: Observer performance study of effects of pixel size on radiologists' characterization of malignant and benign microcalcifications,” Acad Radiol, 2001, 8:454-466. [27] Sahiner B, Chan HP, Petrick N, Helvie MA, Hadjiiski LM, “Improvement of mammographic mass characterization using spiculation measures and morphological features,” Med Phys, 2001, 28(7): 1455-1465. [28] Gurcan MN, Sahiner B, Chan HP, Hadjiiski LM, Petrick N, “Selection of an optimal neural network architecture for computer-aided diagnosis: Comparison of automated optimization techniques,” Med Phys, 2001, 28(9): 1937-1948. [29] Sahiner B, Petrick N, Chan HP, Hadjiiski LM, Paramagul C, Helvie MA, Gurcan MN, “Computer-aided characterization of mammographic masses: Accuracy of mass segmentation and its effects on characterization,” IEEE Trans Med Imaging, 2001, 20(12): 1275-1284. [30] Hadjiiski LM, Sahiner B, Chan HP, Petrick N, Helvie MA, Gurcan MN, “Analysis of temporal changes of mammographic features: Computer-aided classification of malignant and benign breast masses,” Med Phys, 2001, 28(11): 2309-2317. Rev: 06/01/2016
  • 3. [31] Paquerault S, Petrick N, Chan HP, Sahiner B, Helvie MA, “Improvement of computerized mass detection on mammograms: Fusion of two-view information,” Med Phys, 2002, 29(2): 238-247. [32] Gurcan MN, Chan HP, Sahiner B, Hadjiiski LM, Petrick N, Helvie MA, “Optimal neural network architecture selection: Improvement in computerized detection of microcalcifications,” Acad Radiol, 2002, 9:420-429. [33] Petrick N, Sahiner B, Chan HP, Helvie MA, Paquerault S, Hadjiiski LM, “Breast cancer detection: Evaluation of a CAD mass detection algorithm with independent mammographic cases,” Radiology, 2002, 224(1): 217-224. [34] Gurcan MN, Sahiner B, Petrick N, Chan HP, Kazerooni EA, Cascade PN, Hadjiiski LM, "Lung nodule detection on thoracic computed tomography images - Preliminary evaluation of a computer-aided diagnosis system,” Med Phys, 2002, 29(11): 2552-2558. [35] Chan HP, Goodsitt MM, Hadjiiski LM, Bailey JE, Klein K, Darner K, Sahiner B, "Effects of magnification and zooming on depth perception in digital stereomammography: An observer performance study" Phys Med Biol, 2003, 48(22): 3721-3734. [36] Chan HP, Sahiner B, Hadjiiski LM, Petrick N. “Effect of imaging parameters on computer analysis of mammograms,” Seminars in Breast Imaging, 2003; 5: 211-216. [37] Sahiner B, Chan HP, Roubidoux MA, Helvie MA, Hadjiiski LM, Ramachandran A, LeCarpentier GL, Nees A, Paramagul C, Blane CE, "Computerized characterization of breast masses on 3-D ultrasound volumes," Med Phys, 2004, 31(4): 744–754. [38] Wei J, Chan HP, Helvie MA, Roubidoux MA, Sahiner B, Hadjiiski LM, Zhou C, Paquerault S, Chenevert T, Goodsitt MM, "Correlation between mammographic density and volumetric fibroglandular tissue estimated on breast MR images," Med Phys, 2004, 31(4): 933–942. [39] Helvie MA, Hadjiiski LM, Makariou E, Chan HP, Petrick N, Sahiner B, Lo SCB, Freedman M, Adler D, Bailey J, Blane C, Hoff D, Hunt K, Joynt L, Klein K, Paramagul C, Patterson S, Roubidoux MA, "A non-commercial CAD system for breast cancer detection in screening mammograms achieves high sensitivity – A pilot clinical trial," Radiology 2004, 231: 208-214. [40] Dodd LE, Wagner RF, Armato SG, McNitt-Gray MF, Beiden S, Chan HP, Gur D. McLennan G, Metz CE, Petrick N, Sahiner B, Sayre J, “Assessment methodologies and statistical issues for computer-assisted detection of lung nodules in computed tomography: contemporary research topics relevant to the Lung Image Database Consortium,” Academic Radiology, 2004, 11: 462-475. [41] Goodsitt MM, Chan HP, Lydick JT, Gandra CR, Chen NG, Helvie MA, Bailey J, Roubidoux MA, Paramagul C, Blane CE, Sahiner B, Petrick NA, “An observer study comparing spot imaging regions selected by radiologists and a computer for an automated stereo spot mammography technique,” Med Phys, 2004 31:1558-1567. [42] Zhou C, Chan HP, Paramagul C, Roubidoux MA, Sahiner B, Hadjiiski LM, Petrick N, “Computerized nipple identification for multiple image analysis in computer-aided diagnosis,” Med Phys, 2004, 31: 2871-2882. [43] Hadjiiski L, Chan HP, Sahiner B, Helvie MA, Roubidoux MA, Blane C, Paramagul C, Petrick N, Bailey J, Klein K, Foster M, Patterson S, Adler D, Nees A, Shen J, “Improvement of radiologists’ characterization of malignant and benign breast masses in serial mammograms by computer-aided diagnosis: An ROC study,” Radiology, 2004, 233:255-265. Rev: 06/01/2016
  • 4. [44] Filev P, Hadjiiski LM, Sahiner B, Chan HP, Helvie MA, “Comparison of similarity measures for the task of template matching of masses on serial mammograms,” Med Phys, 2005, 32:515-529. [45] Chan HP, Goodsitt MM, Helvie MA, Hadjiiski LM, Lydick JT, Roubidoux MA, Bailey JE, Nees A, Blane CE, Sahiner B, “ROC study of the effect of stereoscopic imaging on assessment of breast lesions,” Med Phys, 2005, 32: 1001-1009. [46] Zhou C, Chan HP, Patel S, Cascade PN, Sahiner B, Hadjiiski L, Kazerooni EA, “Preliminary Investigation of Computer-aided diagnosis of Pulmonary Embolism in 3D Computed Tomographic Pulmonary Angiography (CTPA) Images,” Academic Radiology 2005, 12: 782-792. [47] Ge Z, Sahiner B, Chan HP, Hadjiiski L, Cascade PN, Bogot N, Kazerooni EA, Wei J, Zhou C, “Computer aided detection of lung nodules: False positive reduction using a 3D gradient field method and 3D ellipsoid fitting,” Med Phys 2005, 32: 2443-2454. [48] Wei J, Sahiner B, Hadjiiski L, Chan HP, Petrick N, Helvie MA, Roubidoux MA, Ge J, Zhou C, “Computer Aided Detection of Breast Masses on Full Field Digital Mammograms,” Med Phys 2005, 32: 2827-2838. [49] Chan HP, Wei J, Sahiner B, Rafferty EA, Wu T, Roubidoux MA, Moore RH, Kopans DB, Hadjiiski L, Helvie MA, “Computer-aided detection system for breast masses on digital tomosynthesis mammograms – Preliminary experience,” Radiology, 2005, 237: 1075-1080. [50] Hadjiiski L, Sahiner B, Chan HP, “Advances in computer-aided diagnosis for breast cancer,” Current Opinion in Obstetrics and Gynecology 2006, 18:64–70. [51] Sahiner B, Chan HP, Hadjiiski LM, Helvie MA, Paramagul C, Ge J, Wei J, Zhou C, “Joint two-view information for computerized detection of microcalcifications on mammograms,” Medical Physics 2006, 33: 2574-2585. [52] Way TW, Hadjiiski LM, Sahiner B, Chan HP, Cascade PN, Kazerooni EA, Bogot N, Zhou C, “Computer-aided Diagnosis of Pulmonary Nodules on CT scans: Segmentation and Classification Using 3D Active Contours” Medical Physics 2006, 33: 2323:2337. [53] Ge J, Sahiner B, Hadjiiski LM, Chan HP, Wei J, Helvie MA, Zhou C, “Computer Aided Detection of Clusters of Microcalcifications on Full Field Digital Mammograms,” Medical Physics 2006, 33: 2975-2988. [54] Hadjiiski L, Sahiner B, Helvie MA, Chan HP, Roubidoux MA, Paramagul C, Blane C, Petrick N, Bailey J, Klein K, Foster M, Patterson S, Adler D, Nees A, Shen J, “Computer- Aided Diagnosis of Breast Cancer in Serial Mammograms,” Radiology 2006, 240: 343- 356. [55] Zhang Y, Chan HP, Sahiner B, Wei J, Goodsitt MM, Hadjiiski LM, Ge J, Zhou C, “A comparative study of limited-angle cone-beam reconstruction methods for breast tomosynthesis,” Medical Physics 2006, 33:3781-3795. [56] Wei J, Chan HP, Sahiner B, Hadjiiski LM, Helvie MA, Roubidoux MA, Zhou C, Ge J, “Dual system approach to computer-aided detection of breast masses on mammograms,” Medical Physics 2006, 33:4157-4168. [57] Hadjiiski LM, Chan HP, Sahiner B, Helvie MA, Roubidoux MA, “Quasi-Continuous and Discrete Confidence Rating Scales for Observer Performance Studies: Effects on ROC Analysis”, Academic Radiology 2007, 14:38–48. Rev: 06/01/2016
  • 5. [58] Sahiner B, Chan HP, Roubidoux MA, Hadjiiski L, Helvie MA, Paramagul C, Bailey J, Nees A, Blane C, “Computer-Aided Diagnosis of Malignant and Benign Breast Masses in 3D Ultrasound Volumes: Effect on Radiologists' Accuracy,” Radiology 2007, 242:716- 724. [59] Ge J, Hadjiiski LM, Sahiner B, Chan HP, Wei J, Helvie MA, Zhou C, “Computer aided detection system for clustered microcalcifications: Comparison of performance on full field digital mammograms and digitized screen-film mammograms,” Physics in Medicine and Biology 2007, 52:981:1000. [60] Shi J, Sahiner B, Chan HP, Hadjiiski L, Zhou C, Cascade PN, Bogot N, Kazerooni EA, Wu YT, Wei J, “Pulmonary Nodule Registration in Serial CT Scans Based on Rib Anatomy and Nodule Template Matching,” Medical Physics 2007, 34:1336-1347. [61] Yoon HJ, Zheng B, Sahiner B, Chakraborty DP, “Evaluating computer aided detection (CAD) algorithms,” Medical Physics 2007, 34:2024:2038. [62] Wei J, Hadjiiski L, Sahiner B, Chan HP, Ge J, Roubidox MA, Helvie MA, Zhou C, Wu YT, Zhang Y, “Computer Aided Detection Systems for Breast Masses: Comparison of Performances on Full-Field Digital Mammograms and Digitized Screen-film Mammograms,” Academic Radiology 2007, 14:659-669. [63] Zhang Y, Chan HP, Sahiner B, Wu YT, Zhou C, Ge J, Wei J, Hadjiiski LM, “Application of boundary detection information in breast tomosynthesis reconstruction,” Medical Physics 2007, 34:3603-3613. [64] Wu YT, Wei J, Hadjiiski LM, Sahiner B, Zhou C, Ge J, Shi J, Zhang Y, Chan HP, “Bilateral mammogram based computer-aided detection system for false positive reduction,” Medical Physics 2007, 34: 3334-3344. [65] Zhou C, Chan HP, Sahiner B, Hadjiiski LM, Chugtai A, Patel S, Wei J, Ge J, Cascade PN, Kazerooni EA, “Automatic multiscale enhancement and hierarchical segmentation of pulmonary vessels in CT pulmonary angiography (CTPA) images for CAD applications”, Medical Physics 2007, 34: 4567-4577. [66] Street E, Hadjiiski LM, Sahiner B, Gujar S, Ibrahim M, Mukherji SK, Chan HP, “Automated Volume analysis of head and neck lesions on CT scans using 3D level set segmentation,” Medical Physics 2007, 34: 4399-4408. [67] Shi J, Sahiner B, Chan HP, Ge J, Hadjiiski LM, Helvie MA, Nees A, Wu YT, Wei J, Zhou C, Zhang Y, Cui J, “Characterization of Mammographic Masses Based on Level Set Segmentation with New Image Features and Patient Information,” Medical Physics 2008, 35: 280-290. [68] Sahiner B, Chan HP, Hadjiiski LM, “Performance analysis of 3-class classifiers: Properties of the 3D ROC surface and the normalized volume under the surface for the ideal observer,” IEEE Transactions on Medical Imaging 2008, 27: 215-227. [69] Sahiner B, Chan HP, Hadjiiski LM, “Classifier Performance Estimation Under the Constraint of a Finite Sample Size: Resampling Schemes Applied to Neural Network Classifiers,” Neural Networks 2008, 21: 476–483. [70] Sahiner B, Chan HP, Hadjiiski LM, “Classifier performance prediction for computer- aided diagnosis using a limited data set,” Medical Physics 2008, 35:1559-1570. [71] Chan HP, Hadjiiski LM, Zhou C, Sahiner B, “Computer-Aided Diagnosis of Lung Cancer and Pulmonary Embolism in Computed Tomography – A Review,” Academic Radiology 2008, 15: 535-555. Rev: 06/01/2016
  • 6. [72] Way TW, Chan HP, Goodsitt MM, Sahiner B, Hadjiiski LM, Zhou C, Chughtai A, “Effect of CT scanning parameters on volumetric measurements of pulmonary nodules by 3D active contour segmentation: a phantom study,” Physics in Medicine and Biology 2008, 53: 1295-1312. [73] Chan HP, Wei J, Zhang Y, Helvie MA Moore RH, Sahiner B, Hadjiiski L, Kopans DB, “Computer-aided detection of masses in digital tomosynthesis mammography: Comparison of three approaches,” Medical Physics 2008, 35: 4087-4095. [74] Filev P, Hadjiiski L, Chan HP, Sahiner B, Ge J, Helvie MA, Roubidoux MA, Zhou C, “Automated regional registration and characterization of corresponding microcalcification clusters on temporal pairs of mammograms for interval change analysis,” Medical Physics 2008, 35: 5340-5350. [75] Cui J, Sahiner B, Chan HP, Nees AV, Paramagul C, Hadjiiski L, Zhou C, Shi J, “A new automated method for the segmentation and characterization of breast masses on ultrasound images,” Medical Physics 2009, 36:1553-1565. [76] Sahiner B, Chan HP, Hadjiiski LM, Roubidoux MA, Paramagul C, Bailey JE, Nees AV, Blane CE, Adler DD, Patterson SK, Klein KA, Pinsky RW, Helvie MA, ”Multi-modality CADx: ROC study of the effect on radiologists' accuracy in characterizing breast masses on mammograms and 3D ultrasound images,” Academic Radiology 2009, 16:810–818. [77] Zhang Y, Chan HP, Sahiner B, Wei J, Zhou C, Hadjiiski L, “Artifact reduction methods for truncated projections in iterative breast tomosynthesis reconstruction,” Journal of Computer Assisted Tomography 2009, 33:426-435. [78] Way T, Sahiner B, Chan HP, Hadjiiski L, Cascade PN, Chughtai A, Bogot N, Kazerooni E, “Computer aided diagnosis of pulmonary nodules on CT scans: Improvement of classification performance with nodule surface features,” Medical Physics 2009, 36:3086- 3098. [79] Zhou C, Chan HP, Sahiner B, Hadjiiski LM, Chughtai AR, Patel S, Wei J, Cascade PN, Kazerooni EA, “Computer-aided detection of pulmonary embolism in computed tomographic pulmonary angiography (CTPA): Performance evaluation with independent data sets,” Medical Physics 2009, 36:3385-3396. [80] Wei J, Chan HP, Sahiner B, Zhou C, Hadjiiski L, Roubidoux MA, Helvie MA, “Computer-aided detection of breast masses on mammograms: Dual system approach with two-view analysis,” Medical Physics 2009, 36:4451-4460. [81] Shi J, Sahiner B, Chan HP, Paramagul C, Hadjiiski LM, Helvie MA, Chenevert TL, “Treatment response assessment of breast masses on dynamic contrast-enhanced magnetic resonance scans using fuzzy c-means clustering and level set segmentation,” Medical Physics 2009, 36:5052-5063. [82] Sahiner B, Chan HP, Hadjiiski LM, Cascade PN, Kazerooni EA, Chughtai AR, Poopat C, Song T, Frank L, Stojanovska J, Attili A, “Effect of CAD on radiologists’ detection of lung nodules on thoracic CT scans: Analysis of an observer performance study by nodule size” Academic Radiology 2009, 16:1518-1530. [83] Wu YT, Zhou C, Chan HP, Paramagul C, Zhang Y, Hadjiiski LM, Sahiner B, Shi J, Wei J, “Dynamic multiple thresholding breast boundary detection algorithm for mammograms,” Medical Physics 2010, 37:391-401. [84] Way T, Sahiner B, Hadjiiski LM, Chan HP, “Effect of finite sample size on feature selection and classification: a simulation study,” Medical Physics 2010, 37:907-920. Rev: 06/01/2016
  • 7. [85] Way T, Chan HP, Hadjiiski L, Sahiner B, Chugtai A, Song TK, Poopat C, Stojanovska J, Frank L, Attili A, Bogot N, Cascade PN, Kazerooni EA, “Computer-aided diagnosis of lung nodules on CT scans: An observer study of its effect on radiologists’ performance,” Academic Radiology 2010, 17:323-332. [86] Hadjiiski L, Mukherji SK, Gujar S, Sahiner B, Ibrahim M, Street E, Moyer J, Chan HP, “Head and neck cancers on CT: preliminary study of treatment response assessment based on computerized volume analysis,” American Journal of Roentgenology 2010, 194:1083-1089. [87] Zhou C, Wei J, Chan HP, Paramagul C, Hadjiiski LM, Sahiner B, Douglas J, “Computerized image analysis: Texture-field orientation method for pectoral muscle identification on MLO-view mammograms,” Medical Physics 2010, 37:2289-2299. [88] Chan HP, Wu YT, Sahiner B, Wei J, Helvie MA, Zhang Y, Moore RH, Kopans DB, Hadjiiski LM, Way T, “Characterization of masses in digital breast tomosynthesis: comparison of machine learning in projection views and reconstructed slices,” Medical Physics 2010, 37: 3576-3586. [89] Hadjiiski LM, Mukherji SK, Gujar S, Sahiner B, Ibrahim M, Street E, Moyer J, Worden FP, Chan HP, “Treatment response assessment of head and neck cancers on CT using computerized volume analysis,” American Journal of Neuroradiology 2010, 31:1744- 1751. [90] Cho, HC, Hadjiiski LM, Sahiner B, Chan HP, Helvie MA, Paramagul C, Nees AV, “Similarity evaluation in a content-based image retrieval (CBIR) CADx system for characterization of breast masses on ultrasound images,” Medical Physics 2011, 38: 1820-1831. [91] Wei J, Chan HP, Zhou C, Wu YT, Sahiner B, Hadjiiski LM, Roubidoux MA, Helvie MA, “Computer-aided detection of breast masses: Four-view strategy for screening mammography,” Medical Physics 2011, 38: 1867-1876. [92] Samuelson F, Gallas BD, Myers KJ, Petrick N, Pinsky P, Sahiner B, Campbell G, Pennello GA, “The Importance of ROC Data,” Academic Radiology 2011, 18: 257-258. [93] Wei J, Chan HP, Wu YT, Zhou C, Helvie MA, Hadjiiski LM, Sahiner B, “A pilot case- control study for analyzing the association of computerized mammographic parenchymal pattern (MPP) with breast cancer risk,” Radiology 2011, 260:42-49. [94] Sahiner B, Chan HP, Hadjiiski LM, Helvie MA, Wei J, Zhou C, “Computer-aided detection of clustered microcalcifications in digital breast tomosynthesis: A 3D approach,” Medical Physics 2012, 39:28-39. [95] Gallas BD, Chan HP, D'Orsi CJ, Dodd LE, Giger ML, Gur D, Krupinski EA, Metz CE Myers KJ; Obuchowski NA, Sahiner B, Toledano AY, Zuley ML, “Evaluating Imaging and Computer-aided Detection and Diagnosis Devices at the FDA,” Academic Radiology 2012, 19:463-477. [96] Wang SJ, McKenna MT, Nguyen TB, Burns JE, Petrick N, Sahiner B, Summers RM, "Seeing Is Believing: Video Classification for Computed Tomographic Colonography Using Multiple-Instance Learning," IEEE Transactions on Medical Imaging 2012,31: 1141-1153. [97] Chen W, Petrick N, Sahiner B, “Hypothesis Testing in Noninferiority and Equivalence MRMC ROC Studies,” Academic Radiology 2012, 9:1158-1165. Rev: 06/01/2016
  • 8. [98] Gavrielides MA, Zeng R, Myers KJ, Sahiner B, Petrick N, “Benefit of Overlapping Reconstruction for Improving the Quantitative Assessment of CT Lung Nodule Volume”, Academic Radiology 2013, 20: 173-180. [99] Cho, HC, Hadjiiski LM, Sahiner B, Chan HP, Helvie MA, Paramagul C, Nees AV, "A similarity study of content-based image retrieval system for breast cancer using decision tree," Medical Physics 2013, 40: 012901-1,13. [100] Chen W, Samuelson FW, Gallas B, Kang L, Sahiner B, Petrick N, “On the assessment of the added value of new predictive biomarkers,” BMC Med Res Methodol, 2013, 13:98. [101] Huo, Z, Summers RM, Paquerault S, Lo J, Hoffmeister J, Armato SG, Friedman M, Lin J, Lo SCB, Petrick N, Sahiner B, Fryd D, Yoshida H, Chan HP, “Quality Assurance and Training Procedures for Computer-aided Detection and Diagnosis Systems,” Medical Physics 2013, 40:077001. [102] Petrick N, Sahiner B, Armato S, Bert A, Correale L, Delsanto S, Freedman M, Fryd D, Gur D, Hadjiiski L, Hou Z, Jiang Y, Morra L, Paquerault S, Raykar V, Salganicoff M, Samuelson F, Summers RM, Tourassi G, Yoshida H, Zheng B, Zhou C, Chan HP, “Evaluation of Computer-Aided Detection and Diagnosis Systems,” Medical Physics 2013, 40:087001. [103] Gavrielides MA, Li Q, Zeng R, Myers KJ, Sahiner B, Petrick N, “Minimum detectable change in lung nodule volume in a phantom CT study,” Academic Radiology 2013, 20:1364-1370. [104] He X, Sahiner B, Gallas, B, Chen W, Petrick N. “Computerized Characterization of Lung Nodule Subtlety,” Physics in Medicine and Biology 2014, 59:897-910. [105] Abbey CK, Gallas BD, Boone JM, Niklason LT, Hadjiiski LM, Sahiner B, Samuelson, FW “Comparative statistical properties of expected utility and area under the ROC curve for laboratory studies of observer performance in screening mammography,” Academic Radiology 2014, 21:481-90. [106] Samala RK, Chan H-P, Lu Y, Hadjiiski L, Wei J, Sahiner B, Helvie MA “Computer- Aided Detection of Clustered Microcalcifications in Multiscale Bilateral Filtering Regularized Reconstructed Digital Breast Tomosynthesis Volume,” Medical Physics 2014, 41(2):021901. [107] He X, Samuelson F, Zeng R, Sahiner B, “Discovering intrinsic properties of human observers' visual search and mathematical observers' scanning,” Journal of the Optical Society of America, 2014, 31:2495-2510. [108] Gavrielides MA, Li Q, Zeng R, Myers KJ, Sahiner B, Petrick N, “Volumetric analysis of non-calcified lung nodules with thoracic CT: an updated review of related work over the last 5 years,” Journal of Radiology & Radiation Therapy, 2014, 2(3): 1060. [109] Li Q, Gavrielides MA, Zeng R, Myers KJ, Sahiner B, Petrick N, “Volume estimation of low-contrast lesions with CT: a comparison of performances from a phantom study, simulations and theoretical analysis,” Physics in Medicine and Biology, 2015, 60:671- 688. [110] Li Q, Gavrielides MA, Sahiner B, Myers KJ, Zeng R, Petrick N, “Statistical analysis of lung nodule volume measurements with CT in a large-scale phantom study,” Medical Physics 2015, 42:3932-3947. [111] Pezeshk A, Sahiner B, Zeng R, Wunderlich A, Chen W, Petrick N, "Seamless insertion of pulmonary nodules in chest CT images," IEEE Transactions on Biomedical Engineering, 2015, 62:2812-2827. Rev: 06/01/2016
  • 9. [112] Wang SJ, Li D, Petrick N, Sahiner B, Linguraru MG, Summers RM, "Optimizing area under the ROC curve using semi-supervised learning," Pattern Recognition, 2015, 48:276-287. [113] Fauzi MFA, Pennell M, Sahiner B, Chen W, Shana'ah A, Hemminger J, Kurt H, Losos M, Joehlin-Price A, Kavran C, Smith SM, Nowacki N, Mansoor S, Lozanski G, Gurcan MN, “Classification of Follicular Lymphoma: The Effect of Computer Aid on Pathologists Grading,” BMC Medical Informatics and Decision Making, 2015, 15:115. [114] Gavrielides M, Li Q, Zeng R, Myers K, Sahiner B, Petrick N, “Volume estimation of multi-density nodules with thoracic CT,” Journal of Medical Imaging, 2016, 013504-1-9. [115] Zeng R, Gavrielides MA, Petrick N, Sahiner B, Li Q, Myers KJ, “Estimating Local Noise Power Spectrum (NPS) from a Few FBP-reconstructed CT scans,” Medical Physics, 2016 43:568-582 Rev: 06/01/2016
  • 10. [112] Wang SJ, Li D, Petrick N, Sahiner B, Linguraru MG, Summers RM, "Optimizing area under the ROC curve using semi-supervised learning," Pattern Recognition, 2015, 48:276-287. [113] Fauzi MFA, Pennell M, Sahiner B, Chen W, Shana'ah A, Hemminger J, Kurt H, Losos M, Joehlin-Price A, Kavran C, Smith SM, Nowacki N, Mansoor S, Lozanski G, Gurcan MN, “Classification of Follicular Lymphoma: The Effect of Computer Aid on Pathologists Grading,” BMC Medical Informatics and Decision Making, 2015, 15:115. [114] Gavrielides M, Li Q, Zeng R, Myers K, Sahiner B, Petrick N, “Volume estimation of multi-density nodules with thoracic CT,” Journal of Medical Imaging, 2016, 013504-1-9. [115] Zeng R, Gavrielides MA, Petrick N, Sahiner B, Li Q, Myers KJ, “Estimating Local Noise Power Spectrum (NPS) from a Few FBP-reconstructed CT scans,” Medical Physics, 2016 43:568-582 Rev: 06/01/2016