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PhyNexus                                                                            www.phynexus.com
                                                                                                         408.267.7214



PHYTIP® COLUMNS: BEYOND AFFINITY PURIFICATION
ADAPTING ION EXCHANGE TO SMALL-SCALE COLUMNS

The PhyNexus line of PhyTip products includes the industry proven ProA, ProG and ProPlus columns for
antibody purification, IMAC columns for His-tagged protein purification, Glutathione columns for GST-
tagged protein purification and Streptavidin columns for biotin-tagged protein and nucleic acid
purifications. PhyNexus has taken the core PhyTip column technology beyond affinity purifications to
develop Gel Filtration columns as well as expand upon the custom resin packing service. The newest
separation chemistry to be adapted into the PhyTip column is ion exchange. In traditional ion exchange
chromatography, samples, wash buffers and gradient elution buffers pass through packed columns in
one direction. The PhyTip column is able to simulate this chromatographic separation in a small,
pipette tip column by driving the binding and release steps to equilibrium. This is not achieved by using
high back-pressure, large columns, but instead by back-and-forth flow.

•    Development of ion exchange purification methods in a fast, efficient manner
•    Automation compatible on the MEA Personal Purification System or other robotic systems
•    Parallel processing to screen resins and buffers
•    Applications include optimization of protein purification conditions, imidazole removal after His-
     tagged protein purification and high-throughput replacement of finishing columns




Recovery of BSA using a weak anion exchange resin (left) and lysozyme        Further process optimization of
using a weak cation exchange resin (right). A matrix of binding buffers of   lysozyme binding conditions with
varying pH and elution buffers of increasing salt concentration allow for    cation exchange columns: binding
rapid process optimization using PhyTip columns.                             efficiency as a function of residence
                                                                             time and capture cycles at pH 6.0.




PHYTIP is a registered trademark of PhyNexus, Inc.                           Copyright © 2008, PhyNexus, Inc., All Rights Reserved.
PhyNexus                                                                                           www.phynexus.com
                                                                                                                         408.267.7214


 PHYTIP® COLUMNS: BEYOND AFFINITY PURIFICATION
 ADAPTING ION EXCHANGE TO SMALL-SCALE COLUMNS
Perform resin screening in for most efficient capture of target proteins
                                                                               Table 1: Ion exchange resins used for
                                                                               screening binding efficiency
                                                                               Resin      Type
                                                                               A               Weak cation exchange
                                                                               B               Strong cation exchange
                                                                               C               Strong cation exchange
                                                                               D               Strong cation exchange
                                                                               E               Strong cation exchange
                                                                               F               Strong anion exchange
                                                                               G               Strong anion exchange
                                                                               H               Weak anion exchange




5µL of each of eight different ion exchange resins (Table 1) were packed into PhyTip columns and tested
in parallel for efficiency of capture. Using the MEA Personal Purification System the columns were
equilibrated in 100µL of 25mM Tris pH 8.0, 5mM NaCl using 1 cycle at 0.25mL/minute, and performed 8
capture cycles at 0.25mL/minute of 200µL capture buffer spiked with BSA to 2mg/mL. Starting sample
and sample flow through was quantified by the NanoDrop UV spectrometer for absorbance at 280nm.
The lysozyme capture efficiency was performed in the same way except columns were equilibrated in
25mM Na-citrate, pH 6.0, 5mM NaCl buffer and samples were composed of the same equilibration buffer
spiked with lysozyme to 0.4mg/mL. Comparison of capture of two proteins using 8 different resins took
less than 35 minutes.
           PhyTip ion exchange columns available as a custom product, for ordering details please contact PhyNexus

           Columns are available in the following sizes:

           200 µL column with ion exchange resin volume of 5 µL and 20 µL

           1000 µL column with ion exchange resin volume of 10, 20, 40, 80, 160, and 320µL

                          PhyTip     columns      are   specifically          PhyTip columns can also be used
                          manufactured for the automated                      with the ME 200 and ME 1000 semi-
                          MEA bench top, walk-away system.                    automated purification systems.




 PHYTIP is a registered trademark of PhyNexus, Inc.                                          Copyright © 2008, PhyNexus, Inc., All Rights Reserved.

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Ion Exchange Resins in PhyTip Columns

  • 1. PhyNexus www.phynexus.com 408.267.7214 PHYTIP® COLUMNS: BEYOND AFFINITY PURIFICATION ADAPTING ION EXCHANGE TO SMALL-SCALE COLUMNS The PhyNexus line of PhyTip products includes the industry proven ProA, ProG and ProPlus columns for antibody purification, IMAC columns for His-tagged protein purification, Glutathione columns for GST- tagged protein purification and Streptavidin columns for biotin-tagged protein and nucleic acid purifications. PhyNexus has taken the core PhyTip column technology beyond affinity purifications to develop Gel Filtration columns as well as expand upon the custom resin packing service. The newest separation chemistry to be adapted into the PhyTip column is ion exchange. In traditional ion exchange chromatography, samples, wash buffers and gradient elution buffers pass through packed columns in one direction. The PhyTip column is able to simulate this chromatographic separation in a small, pipette tip column by driving the binding and release steps to equilibrium. This is not achieved by using high back-pressure, large columns, but instead by back-and-forth flow. • Development of ion exchange purification methods in a fast, efficient manner • Automation compatible on the MEA Personal Purification System or other robotic systems • Parallel processing to screen resins and buffers • Applications include optimization of protein purification conditions, imidazole removal after His- tagged protein purification and high-throughput replacement of finishing columns Recovery of BSA using a weak anion exchange resin (left) and lysozyme Further process optimization of using a weak cation exchange resin (right). A matrix of binding buffers of lysozyme binding conditions with varying pH and elution buffers of increasing salt concentration allow for cation exchange columns: binding rapid process optimization using PhyTip columns. efficiency as a function of residence time and capture cycles at pH 6.0. PHYTIP is a registered trademark of PhyNexus, Inc. Copyright © 2008, PhyNexus, Inc., All Rights Reserved.
  • 2. PhyNexus www.phynexus.com 408.267.7214 PHYTIP® COLUMNS: BEYOND AFFINITY PURIFICATION ADAPTING ION EXCHANGE TO SMALL-SCALE COLUMNS Perform resin screening in for most efficient capture of target proteins Table 1: Ion exchange resins used for screening binding efficiency Resin Type A Weak cation exchange B Strong cation exchange C Strong cation exchange D Strong cation exchange E Strong cation exchange F Strong anion exchange G Strong anion exchange H Weak anion exchange 5µL of each of eight different ion exchange resins (Table 1) were packed into PhyTip columns and tested in parallel for efficiency of capture. Using the MEA Personal Purification System the columns were equilibrated in 100µL of 25mM Tris pH 8.0, 5mM NaCl using 1 cycle at 0.25mL/minute, and performed 8 capture cycles at 0.25mL/minute of 200µL capture buffer spiked with BSA to 2mg/mL. Starting sample and sample flow through was quantified by the NanoDrop UV spectrometer for absorbance at 280nm. The lysozyme capture efficiency was performed in the same way except columns were equilibrated in 25mM Na-citrate, pH 6.0, 5mM NaCl buffer and samples were composed of the same equilibration buffer spiked with lysozyme to 0.4mg/mL. Comparison of capture of two proteins using 8 different resins took less than 35 minutes. PhyTip ion exchange columns available as a custom product, for ordering details please contact PhyNexus Columns are available in the following sizes: 200 µL column with ion exchange resin volume of 5 µL and 20 µL 1000 µL column with ion exchange resin volume of 10, 20, 40, 80, 160, and 320µL PhyTip columns are specifically PhyTip columns can also be used manufactured for the automated with the ME 200 and ME 1000 semi- MEA bench top, walk-away system. automated purification systems. PHYTIP is a registered trademark of PhyNexus, Inc. Copyright © 2008, PhyNexus, Inc., All Rights Reserved.