This presentation gives introduction to human auditory system and signal processing goes on in brain to deduce spatial information about the sound we hear.
This power is a summery of PRINCIPLES OF NEURAL SCIENCE. Fifth Edition. Edited by ERICR. KANDEL , JAMES H. CHWARTZ , THOMAS M. JESSELL ,STEVEN A. SIEGELBAUM
A. J. HUDSPETH
An overview of Binaural Beats and how they work (and how they don't). This form of music therapy is based on a lot of solid science, but some beats make questionable claims. You be the judge!
This power is a summery of PRINCIPLES OF NEURAL SCIENCE. Fifth Edition. Edited by ERICR. KANDEL , JAMES H. CHWARTZ , THOMAS M. JESSELL ,STEVEN A. SIEGELBAUM
A. J. HUDSPETH
An overview of Binaural Beats and how they work (and how they don't). This form of music therapy is based on a lot of solid science, but some beats make questionable claims. You be the judge!
Human ear, organ of hearing and equilibrium that detects and analyzes sound by transduction (or the conversion of sound waves into electrochemical impulses) and maintains the sense of balance (equilibrium).
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
2. Objective
● Review Auditory System
● Review of what is sound?
● Understand Auditory Information Processing.
● Conclusion
3. Auditory System
● Auditory system consists of
the following components.
– External ear (Pinna, ear
canal and ear drum).
– Middle ear (3 very light
weight tiny bones named
ossicles).
– Inner ear (Cochlea, hair
cells, special nerve
called spiral ganglion)
Fig.1: Schematic of Auditory Path
Fig.2: Schematic Position of Auditory Cortex
4. Auditory System
● Spiral Ganglion nerves runs
through 8th
cranial nerve
(CN VIII) to bring
information to auditory
cortex of the brain.
– Fig. 2 shows the part of
brain in pink patch
known to be the auditory
processing centre,
auditory cortex.
Fig.1: Schematic of Auditory Path
Fig.2: Schematic Position of Auditory Cortex
5. Auditory System
● Fig. 3 shows relative amount
of cells that present in
various parts of the
auditory system.
● Most portion of the cells are
in the auditory cortex.
● Only small chunk of cells are
part of hair cells (inner or
outer – in red), sensory
neurons (in blue) and
central neurons in various
part of the path (in black
inner circles).
Fig.3: Relative Amount of Cells in
Different Parts of Auditory System
6. Auditory System
● Why do we need such a big
amount of auditory cortex
cells?
– We'll review later in these
slides on the auditory
information processing.
– We need to process for
speech interpretation
and spatial information.
– We need to process not
only the auditory signals
but also combine them
to visual information for
gaining spatial
information.
Fig.3: Relative Amount of Cells in
Different Parts of Auditory System
7. What is sound?
● Sound is a physical phenomenon of compression and
rarefaction of the medium (gas, fluid or solid) through
which energy flows from one place to another.
● It can be represented as wave in terms of air pressure with
respect to time (Fig. 4).
Fig.4: Sound Wave
8. Auditory Information Processing
● Two types of processing
– Passive processing and transformation of
sound energy
– Active processing for information extraction.
● Perception: Extraction of meaning of sound
(speech recognition, understanding of
surroundings and ambiance, etc.)
● Spatial: Direction of source, distance of the
source, etc.
9. Passive Information Processing
● Passive Processing.
– External ear canal has resonance of same frequency as the human speech. Thus
is increases volume of the sound inside the ear canal.
– Middle ear transform the vibration in air into the vibration of fluid inside the cochlea.
The ossicles connects tympanic membrane of external ear to the oval window
membrane of cochlea. The bone hammers the oval window membrane with
same frequency as the incoming sound. The energy level is decreased partially
during this conversation.
– Inner ear transform vibration energy into electrical pulses along the nerve cell
inside cochlea and transmit it to the brain. In concept Fourier transformation is
done on the incoming vibration (i.e. transforming time domain signal into
frequency domain signal).
External
EarSound
wave
Sound
Wave with
increased
volume
Middle
Ear
Internal
EarAir to fluid
Vibration
transmission
BrainElectrical
Pulses
through
transduction
10. Direction Information Processing
● Unlike visual information, audio
information does not produce any
image, thus it is much more
challenging to deduce spatial
information out of sound.
– Spatial information is computed.
● Location of sound source is computed
using interaural time delay (ITD).
– Sound travels more path to far ear.
– As sound source is located far
toward the side, this difference in
distance increases.
– With a ear-to-ear distance of 140cm
the ITD can be computed as
0.41ms.
– ITD is too small to be computed by
action potential (electrical
pulses) of the auditory neuron.
11. Direction Information Processing
● ITD is computed using differential neurons
where neurons from both side ears connect
to the differential neurons.
– Two set of differential neurons, where one
is set is located near left ear and other
set is located near right ear.
– There will be time difference reaching
sound signals onto these differential
neurons.
– Combining information generated out of
these differential neurons can infer the
direction of the sound source.
● Not only ITD, but sound level is also used to
infer sound source direction (Interaural
Level Difference or ILD).
– Sound coming from one side will create
acoustic shadow into the other ear.
– Volume will be less in this acoustic
shadow location.
– Difference of the volume will be more as
the the sound source moves further
from the centre.
12. Direction Information Processing
● ITD and ILD provides horizontal information
only.
– This produces cone of confusion.
– Cone of confusion is created by the
positions of sound source which
produces same amount of ITD and
ILD.
– Confusion can be created either at
vertical dimension or front/back.
● We solve cone of confusion by two ways.
– Using head movement.
– Using sound frequency.
13. Direction Information Processing
● Front/back confusion is resolved by moving
head.
– 'A' position in the picture produces same
ITD and ILD.
– We move our head to position 'B' to make
different ITD and ILD and resolve
front/back confusion.
● Similarly, vertical confusion is resolved by
tilting of head.
– Head tilt creates different ITD and ILD,
hence we can resolve confusion.
● These technique requires longer sound so that
we can react to compute direction by head
movement.
● Direction information processing also needs to
process amount of signal that produced
active head movement.
14. Direction Information Processing
● We also process incoming sound wave
information with its spectral cues.
● Sound is not a simple sin wave, it is much
complex than that.
● Any complex wave can be expressed as a sum
of the simple sin waves with different
frequency and amplitude.
– In mathematical term this transformation is
called Fourier transformation.
● The plot of Amplitude vs. Frequency for a
sound wave is called spectrum of the
sound.
15. Direction Information Processing
● We do Fourier transformation inside our ear.
– Location at cochlea.
– Timing of the action potential.
● The Basilar membrane in cochlea has a
resonance gradient along the length.
– Towards outer direction it resonate to
higher frequency and towards the
centre it resonate with lower
frequency.
– Corresponding hair cells along the basilar
membrane will produce more action
potentials according to it's frequency
resonance.
● Scraping of hair cells against tectorial
membrane causes opening of ion channels
in the sensory cells, which creates the
action potentials (electrical pulse).
– This opening is synchronized (phase
locked) with the frequency of the
incoming signal. Hence the action
potential has same frequency as the
incoming sound wave.
16. Direction Information Processing
● Sounds are first filtered by the external ear's pinna.
– The little folds in the ear lobe or pinna causes alteration of energies at different frequencies.
– The filtering is direction dependent.
● Different frequencies of same amplitude for a sound coming from same location ends up
having different amplitude after the filtering done by pinna.
● Filtering is also direction dependent.
– Same sound wave from different direction ends up attenuated differently.
– This constructs spectral cue.
● Using spectral cue, we are also able to deduce sound source direction.
17. Direction Information Processing
● Sound itself is not a very strong cue to identify the direction.
● To confirm our deduction to the location we also depends on
the visual cue.
– For example, even if the speech comes from speaker in movie
theater, we perceive that the actor / actress is talking and sound
is coming from their mouth (by observing there lip movement).
– Ventriloquism uses this visual cue association of sound to make
the puppet appeared to be talking while the puppet master is
talking without moving his/her lips.
– We also move our head to look for a plausible source of sound
comparing the sound with our prior knowledge of origin of
similar sound.
18. Distance Information Processing
● Distance is computed using two factors.
– Loudness
– Echos
● Sound loudness diminishes with distance.
● We uses loudness information to deduce the distance of the
sound source.
– Thus this works better with familiar sound.
– Familiar sound level can be compared easily with our prior
knowledge about the loudness of the sound and distance stored
in our memory.
19. Distance Information Processing
● One 'first principles' distance cue is the
delays of echoes associated with that
sound.
– This does not need any prior
knowledge about the sound.
● Our auditory environment acts as a
'auditory hall of mirror' where sound
bounces off every other surfaces in
the environment we are hearing the
sound.
● Time difference between principle sound
and its echo gives cue to the source
distance.
– If the distance of the source is large
(like the top picture) the
difference is smaller.
– If the distance of the source is small
(like the bottom picture) the
difference is larger.
20. Conclusion
● Spatial information processing for sound is complex
involving multilevel signal transformation.
● It involves both audio and visual processing.
● It also depends on physical phenomenon like echo.
● It involves prior knowledge about sound (loudness).
21. Acknowledgement
● Most of the figures have been taken from:
– Coursera course on 'Neurobiology in Everyday
Life'.
– Coursera course on 'Brain and Space'
– Wikipedia
● Auditory Cortex (
http://en.wikipedia.org/wiki/Auditory_cortex)