Intracellular transport is based on molecular motors that pull cargos along cytoskeletal filaments. Kinesin and dynein motors walk along microtubule filaments, while myosin motors move along actin filaments.
One motor species walks actively only into one direction along the filament, e.g. kinesin-1 moves to the microtubule plus-end, whereas cytoplasmic dynein moves to the microtubule minus-end. However, many cellular cargos are observed to move bidirectionally, involving both plus- and minus-end-directed motors. The presumably simplest mechanism for such bidirectional transport is provided by a tug-of-war between the two motor species. We have studied this mechanism theoretically, using the load-dependent transport properties of individual motors as measured in single-molecule experiments. In contrast to previous expectations, such a tug-of-war is found to be highly cooperative and can lead to fast bidirectional motion with or without pauses, as observed in vivo. Our model reproduces experimental results on bidirectional transport of lipid droplets in Drosophila embryos, which have previously been thought to be incompatible with a tug-of-war scenario.
One motor species walks actively only along one type of filament. However, the motor myosin-5, which walks actively along actin filaments, can passively diffuse along microtubules. Cargos that are transported along a microtubule by one kinesin and one myosin motor exhibit interspersed moving and diffusing events and increased processivity. We explain this behavior by a stochastic tug model similar to the tug-of-war model.
Lecture: Modeling intracellular cargo transport by several molecular motorsMelanie JI Mueller
The complex internal structure of cells depends to a large extend on active transport by molecular motors. These molecular motors are 'nano-trucks' that transport various cargoes, like vesicles, organelles or mRNA, along cytoskeletal filaments, the 'roads'.
Many cargoes are transported by small teams of about 1-10 motors. Some cargoes make use of just one team of motors of the same kind, while other cargoes are propelled by two different motor teams. These teams might move into opposite directions on the same filament, or move on different types of filaments.
In this talk, we will describe systematic stochastic models for cargo transport by one or two small teams of molecular motors. These models are based on single motor properties as determined in single molecule experiments, and can be used to explain and predict various properties of the movements of cargoes inside of cells. By providing a direct connection between the behavior of single motors and†intracellular transport, the models lead to an improved understanding of this transport†and†its biological functions.
Vibration Analysis of Cracked Rotor Using Numerical ApproachIOSR Journals
In general rotating machines have wide applications in systems, plants, vehicles, and industries. Every rotating machine uses shaft as power transforming unit. It is very dangerous to operate the machine with the presence of crack in the shaft. The growth of the crack is dangerous to operate and may lead to catastrophic failure. It is to be detected at earlier stages. In this paper relation between vibration amplitude and on the crack depth was developed, this helps in determine the depth of the crack by measuring the vibration amplitudes. To develop the relation equation strain energy density function was used. By observing the generated curves amplitude of vibration increases with respect to the depth of the crack due to reduction in stiffness of the shaft.
What are periodic structures?
Why are they important?
How to analyze them?
Simple examples and procedure to get you to understand periodic structures and their applications.
#WikiCourses
https://wikicourses.wikispaces.com/Topic+Periodic+Structures
https://eau-esa.wikispaces.com/Vibration+of+structures
Lecture: Modeling intracellular cargo transport by several molecular motorsMelanie JI Mueller
The complex internal structure of cells depends to a large extend on active transport by molecular motors. These molecular motors are 'nano-trucks' that transport various cargoes, like vesicles, organelles or mRNA, along cytoskeletal filaments, the 'roads'.
Many cargoes are transported by small teams of about 1-10 motors. Some cargoes make use of just one team of motors of the same kind, while other cargoes are propelled by two different motor teams. These teams might move into opposite directions on the same filament, or move on different types of filaments.
In this talk, we will describe systematic stochastic models for cargo transport by one or two small teams of molecular motors. These models are based on single motor properties as determined in single molecule experiments, and can be used to explain and predict various properties of the movements of cargoes inside of cells. By providing a direct connection between the behavior of single motors and†intracellular transport, the models lead to an improved understanding of this transport†and†its biological functions.
Vibration Analysis of Cracked Rotor Using Numerical ApproachIOSR Journals
In general rotating machines have wide applications in systems, plants, vehicles, and industries. Every rotating machine uses shaft as power transforming unit. It is very dangerous to operate the machine with the presence of crack in the shaft. The growth of the crack is dangerous to operate and may lead to catastrophic failure. It is to be detected at earlier stages. In this paper relation between vibration amplitude and on the crack depth was developed, this helps in determine the depth of the crack by measuring the vibration amplitudes. To develop the relation equation strain energy density function was used. By observing the generated curves amplitude of vibration increases with respect to the depth of the crack due to reduction in stiffness of the shaft.
What are periodic structures?
Why are they important?
How to analyze them?
Simple examples and procedure to get you to understand periodic structures and their applications.
#WikiCourses
https://wikicourses.wikispaces.com/Topic+Periodic+Structures
https://eau-esa.wikispaces.com/Vibration+of+structures
This presentation introduces the concept of "impact reduction factor" and a new method that are both developed by Dr. Niyazi Özgür Bezgin to estimate vertical impact forces on railways due to track stiffness variations.
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These are slides for an introductory lecture on fMRI/MRI and analysis of fMRI data. The corresponding tutorial is available on my website kathiseidlrathkopf.com
ME-314 Introduction to Control Engineering is a course taught to Mechanical Engineering senior undergrads. The course is taught by Dr. Bilal Siddiqui at DHA Suffa University. This lecture is about modeling electrical and mechanical systems (transnational and rotational) in frequency domain.
This presentation introduces the concept of "impact reduction factor" and a new method that are both developed by Dr. Niyazi Özgür Bezgin to estimate vertical impact forces on railways due to track stiffness variations.
Tc 202-transportation geotechnics and geoecology conferenceOzgur Bezgin
This presentation presents the concept of "Impact Reduction Factor" and the "Bezgin Impact Factor" to estimate vertical impact forces on railways due to track profile variation.
Attitude Control of Satellite Test Setup Using Reaction WheelsA. Bilal Özcan
A reaction wheel is A type of flywheel used primarily by spacecraft for attitude control without using fuel for rockets or other reaction devices.It bases on the principle of angular momentum transfer. That is Newton’s third law of action-reaction.
1st paper: https://www.researchgate.net/publication/338119144_ATTITUDE_CONTROL_OF_SATELLITE_TEST_SETUP_USING_REACTION_WHEELS
These are slides for an introductory lecture on fMRI/MRI and analysis of fMRI data. The corresponding tutorial is available on my website kathiseidlrathkopf.com
ME-314 Introduction to Control Engineering is a course taught to Mechanical Engineering senior undergrads. The course is taught by Dr. Bilal Siddiqui at DHA Suffa University. This lecture is about modeling electrical and mechanical systems (transnational and rotational) in frequency domain.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
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What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
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As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
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Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...Studia Poinsotiana
I Introduction
II Subalternation and Theology
III Theology and Dogmatic Declarations
IV The Mixed Principles of Theology
V Virtual Revelation: The Unity of Theology
VI Theology as a Natural Science
VII Theology’s Certitude
VIII Conclusion
Notes
Bibliography
All the contents are fully attributable to the author, Doctor Victor Salas. Should you wish to get this text republished, get in touch with the author or the editorial committee of the Studia Poinsotiana. Insofar as possible, we will be happy to broker your contact.
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Intracellular cargo transport: Molecular motors playing tug-of-war
1. Intracellular cargo transport:
Molecular motors playing
tug-of-war
Melanie J.I. Müller,
Stefan Klumpp, Reinhard Lipowsky
Department of Theory & Bio-Systems
Max Planck Institute for Colloids and Interfaces
2. Outline
1) Intracellular cargo transport
& molecular motors
3) Why such weird motion?
2) Motors playing tug-of-war
a) fair play
b) unfair
7. Bidirectional motion in vivo
Transport of endsosomes in fungus Ustilago maydis
Gero Fink 2006, Steinberg lab, MPI for Terrestrial Microbiology, ~ 2x real time, 60 μm hypha, endosome velocity ~ 2 μm/sec
+
_
Filament direction
time [s]
trajectory [μm]
8. Bidirectional motion
• Bidirectional motion on
unidirectional filaments
→ plus and minus motors
on one cargo
trajectory [μm]
time [s]
Gero Fink, MPI for Terrestristrial Mikcrobiology (2006)
Ashkin et al., Nature 348: 346 (1990)
0.1 μm
• Teams of 1-10 motors
9. Why?
• Why bidirectional motion?
→ later
• How does it work?
Why no blockade?
trajectory [μm]
time [s]
~ 2 μm/s
as for one species alone
11. v
π ε
• Velocity v
• Binding rate π
• Unbinding rate ε
Theoretician‘s view of a motor
• Motor characterized by
v(F)F
π(F) ε(F)
• Under load-force F
→ force-dependent parameters
• (F)
• (F)
• (F)
• Scales: many sec, many μm
→ step details irrelevant (0.01 s)
→ protein stucture irrelevant (100 nm)
→ motor unbinding relevant (1 μm)
12. • Velocity decreases with force
Model for a single motor
Velocity [μm/s]
Load F [pN]
Stall
force FS
• Velocity ≈ 0 for high forces → blockade
Load F [pN]
Unbinding rate [1/s]
~ exp[F/Fd]
detachment
force
• Unbinding rate increases
exponentially with force
• Binding rate independent of force
• ‘strong motor’:
stall force Fs > detachment force Fd
14. Tug-of-war model
v(F)F
π
ε(F)
Single motors with rates from
single molecule experiments
• Opposing motors → load force
• Motors of one team share force
• Forces determined by:
- Balance of motor forces
(+ cargo friction + external force)
- All motors move with one velocity
15. • Master equation
• Observation time sec - min → stationary state
• Analysis: numerical calculations, simulations,
analytical approximations
Tug-of-war model
16. Types of motion
Motors block each other
→ no motion
Minus motors win
→ motion to minus end
Plus motors win
→ motion to plus end
18. Symmetric: Plus and minus motors only differ in forward direction
E.g. in vitro antiparallel microtubules
2a) Tug-of-war: fair play
19. Weak motors
• Weak motors := exert less force than they can sustain
stall force Fs < detachment force Fd
• Motors don’t feel each other
→ random binding and unbinding
x x
21. 'Strong' motors:
switching between fast
plus / minus motion
'Weak' motors:
little motion
motor number
trajectory [μm]
time [s]
(−)
(+)
(0)
motor number
probability
(0)
Motility states
trajectory [μm]
time [s]
22. Strong motors
• For motors with larger stall than detachment force
Force on cargo FC
FC/2 FC/3 FC/1 FC/3
Slow motion Fast motion
Unbinding cascade
leads to fast motion
24. 'Strong' motors:
switching between fast
plus / minus motion
Intermediate case:
fast plus and minus
motion with pauses
'Weak' motors:
little motion
motor number
trajectory [μm]
time [s]
(−)
(+)
(0)
(−)
motor numbermotor number
probability
(0)
(+)
(0) (−+)(−0+)
Motility states
trajectory [μm]
time [s]
trajectory [μm]
time [s]
25. 4 plus and 4 minus motors
zz
desorptionconstantK=ε0/π0
stall force Fs / detachment force Fd
ungebunden
(0)
(−+)
(−0+)trajectory [μm]
trajectory [μm]
trajectory [μm]
26. Weak motors
‘Weak' motors:
stall force Fs < detachment force Fd
→ motors don’t feel each other
→ analytical solution
desorptionconstantK=ε0/π0
(0)
(−+)
stall force Fs / detachment force Fd
→ slow motion (0)
(−0+)
27. Strong motors
Unbinding
cascade
→ fast bidirectional motion (−+)
desorptionconstantK=ε0/π0
(0)
(−+)
stall force Fs / detachment force Fd
(−0+)
‘Strong' motors:
stall force Fs > detachment force Fd
31. Mean field approximation
desorptionconstantK=ε0/π0
(0)
(−+)
stall force Fs / detachment force Fd
(−0+)
desorptionconstantK=ε0/π0
stall force Fs / detachment force Fd
Stationary solution ↔ fixed points
Transitions between motility
states ↔ bifurcations
saddle-
node
bifurcation
transcritical
bifurcation
2D nonlinear dynamical
system for <n+>, <n–>
32. Sharp maxima approximation
• Probability concentrated around maxima
→ dynamics only on maxima and nearest neighbours
(0,0)
35. 4 plus and 4 minus motors
• Change of motor parameters ↔ cellular regulation
zz
desorptionconstantK=ε0/π0
(0)
stall force Fs / detachment force Fd
ungebunden
Kin1cDyn cDyn
Kin2Kin3
Kin5
• Sensitivity → efficient regulation of cago motion
Biological
parameter
range
(−0+)
(−+)
36. Asymmetric: e.g. dynein and kinesin
→ Motility states: all combinations of (+), (-), (0)
2b) Tug-of-war: unfair play
37. Asymmetric tug-of-war
→ 7 motility states (+), (–), (0), (–+), (0+), (–0), (–0+)
→ net motion possible
38. Comparison to experiment
• Slow motion (blockade)
Experiment:
Fast motion in each direction
• Why people didn’t believe in a tug-of-war before:
39. • Slow motion (blockade)
Unbinding cascade
→ fast motion
Comparison to experiment
• Why people didn’t believe in a tug-of-war before:
40. • Slow motion (blockade)
• Stronger motors
determine direction
Stronger = higher stall force
Experiment:
stall forces do not
determine direction
Comparison to experiment
• Why people didn’t believe in a tug-of-war before:
41. • Slow motion (blockade)
• Stronger motors
determine direction
→ 'Stronger' can mean
- generate larger force
- bind stronger to filament
- resist pulling force better
→ direction not only
determined by (stall) forces
Comparison to experiment
• Why people didn’t believe in a tug-of-war before:
42. Run times and lengths
• Experimental characterization → run times and lengths
distance [μm]
time [s]
run
length
run time
• determine net direction, velocity, diffusivity
• target of cellular regulation
43. • Slow motion (blockade)
• Stronger motors
determine direction
• Impairing one direction
enhances the other
→ impairing one direction
can have various effects
plus minus
cellular regulation ↓ ─
dynein mutations ↓ ↓
kinesin mutation ↓ ↑
Comparison to experiment
• Why people didn’t believe in a tug-of-war before:
44. Regulation and mutation
• Dynein mutation = changing dynein properties
• Examples:
- increase dynein's unbinding rate
→ minus runs, plus runs
• Cellular regulation = changing motor properties
• Change one parameter → impair / enhance
• Change several parameters
→ various effects of changing many properties
shorter
longer
longer
shorter
- increase dynein's resistance to force
→ minus runs, plus runs
45. • Slow motion (blockade)
• Stronger motors
determine direction
• Impairing one direction
enhances the other
Impairing one direction
(regulation / mutation)
can have various effects
on the other direction
Comparison to experiment
• Why people didn’t believe in a tug-of-war before:
46. Comparison to experiment
Gero Fink, MPI for Terrestrial Microbiology (2006)
time [s]
distance [μm]
Endosomes in fungal hypha:
time [s]
distance [μm]
Simulation trajectory:
→ looks similar
→ good comparison: data with statistics
47. Comparison to experiment
• Bidirectional transport
of lipid-droplets
in Drosophila embryos
trajectory [nm]
time [s]
Gross et al., J. Cell Biol. 148:945 (2000)quest.nasa.gov/projects/flies/LifeCycle.html
• Data from Gross lab (UC Irvine):
- Statistics on run lengths, velocities, stall forces
- effect of cellular regulation (2 embryonic phases)
- effect of 3 dynein mutations
→ Tug-of-war reproduces experimental data within 10 %
→ no coordination complex necessary
49. Why bidirectional motion?
Why instead of ?
• Search for target
• Error correction
• Avoid obstacles
• Cargos without destination
• Easy and fast regulation
• Bidirectional transport of cargo and motors
Why instead of ?
50. Summary
Bidirectional transport
as tug-of-war of molecular motors
• simple model, but
complex and cooperative motility
• fast bidirectional motion ‘despite’ tug-of-war
• complex parameter-dependence
→ efficient regulation of motility
• consistent with in vivo data