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SPARC and ACRL Annual Forum
brian m. bot | sage bionetworks | @BrianMBot
evaluating the quality of
open access content
Sage Bionetworks
a non-profit organization which pilots a
variety of components that are necessary
to build a scientific research commons
focused on a world where biomedical research
will fundamentally change to be
more open and collaborative
supports communities of researchers
working collaboratively across disciplines
accessopen
accessibility
accessopen
dataopen
scienceopen
science
Synapse enabling large-scale collaborative science
enables sharing of all digital assets (data, code, results)
and their relationships to one another
multi-channel communication
instead of uni-directional broadcasting
aides in reproducibility by
enabling communication throughout the research process
not only at time of publication
Synapse enabling large-scale collaborative science
CRC Subtyping Consortium
DREAM Challenges
Progenitor Cell Biology Consortium
TCGA Pan-Cancer Consortium
CommonMind Consortium
Interactome
CTDD
Superheroes Project
Influenza Vaccinations
Craniosynostosis
Psychosis Spectrum Disorder
Oncology Molecular Classifiers
Next Gen Scientific Publishing
Open Science
Synapse enabling large-scale collaborative science
collaboration around common question
DREAM Challenges
collaboration around common data
TCGA Pan-Cancer Consortium
DREAM Challenges
challenge assisted peer review
DREAM Challenges
Synapse enabling large-scale collaborative science
collaboration around common question
DREAM Challenges
collaboration around common data
TCGA Pan-Cancer Consortium
Cyriac Kandoth
TCGA Pan-Cancer Consortium
TCGA Pan-Cancer Consortium
scientific method
1. define a question
2. gather information and resources (background research)
3. form a hypothesis
8. retest (frequently done by other scientists)
4. test hypothesis experimentally
5. analyze experimental data
7. publish results
6. draw conclusions based on data
finitein
∞
...

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evaluating the quality of open access content

  • 1. SPARC and ACRL Annual Forum brian m. bot | sage bionetworks | @BrianMBot evaluating the quality of open access content
  • 2. Sage Bionetworks a non-profit organization which pilots a variety of components that are necessary to build a scientific research commons focused on a world where biomedical research will fundamentally change to be more open and collaborative supports communities of researchers working collaboratively across disciplines
  • 9. Synapse enabling large-scale collaborative science enables sharing of all digital assets (data, code, results) and their relationships to one another multi-channel communication instead of uni-directional broadcasting aides in reproducibility by enabling communication throughout the research process not only at time of publication
  • 10. Synapse enabling large-scale collaborative science CRC Subtyping Consortium DREAM Challenges Progenitor Cell Biology Consortium TCGA Pan-Cancer Consortium CommonMind Consortium Interactome CTDD Superheroes Project Influenza Vaccinations Craniosynostosis Psychosis Spectrum Disorder Oncology Molecular Classifiers Next Gen Scientific Publishing Open Science
  • 11. Synapse enabling large-scale collaborative science collaboration around common question DREAM Challenges collaboration around common data TCGA Pan-Cancer Consortium
  • 13. challenge assisted peer review DREAM Challenges
  • 14. Synapse enabling large-scale collaborative science collaboration around common question DREAM Challenges collaboration around common data TCGA Pan-Cancer Consortium
  • 17. scientific method 1. define a question 2. gather information and resources (background research) 3. form a hypothesis 8. retest (frequently done by other scientists) 4. test hypothesis experimentally 5. analyze experimental data 7. publish results 6. draw conclusions based on data