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Cytoscapeプロジェクト周辺の現状報告。ナラプロテクノロジーズ様でのユーザーミーティング資料。
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Cytoscape Q&A: Latest Versions, Features & Resources
1.
Cytoscape
Q&A Keiichiro Ono UC, San Diego Dept. of Medicine National resource for network biology
2.
•
• • Cytoscape 2.x • Cytoscape 3.x • Cytoscape Web • • Q&A
3.
4.
•
• Java • Cytoscape 2.8.1 • Cytoscape 3 Alpha 1 Dev. Release • Web • Cytoscpe Web ver. 0.7.1
5.
•
• NIH P-41 ($6.5 mil.) • National Resource for Network Biology (NRNB) • http://nrnb.org/
6.
7.
8.
P-41 •
• • •
9.
10.
11.
2.8.1 • • •
12.
3.0.0 Alpha Dev.
Release • • •
13.
Cytoscape Web •
Flash • Java Cytoscape • • WEB • JavaScript
14.
Web •
• • • ➡ (XGMML/GraphML)
15.
1. <html> 2. <head> </head> 3.
<body> 4. 5. <h1>Sample</h1> 6. <div id="cytoWebContent" style="width: 600px;height: 400px;"></div> 7. 8. <script type="text/javascript"> 9. var options = { swfPath: "path/to/swf/CytoscapeWeb", 10. flashInstallerPath: "path/to/swf/playerProductInstall", 11. flashAlternateContent: "Le Flash Player est nécessaire." }; 12. 13. var vis = new org.cytoscapeweb.Visualization("cytoWebContent", options); 14. 15. vis.draw({ network: '<graphml>...</graphml>' }); 16. </script> 17. 18. </body> 19. <html>
16.
GENEMANIA
17.
2: ATTED-II
18.
•
→ 2.8.x • → 2.8.x • → 3.x • → 3.x • → Cytoscape Web
19.
•
• OSGi • API • •
20.
21.
• 3.0
• • • 2.x • Cytoscape Web
22.
Cytoscape Retreat 2011 •
La Jolla, CA USA • •
23.
Cytoscpae Retreat 2012
Japan (?) • •
24.
Q&A
25.
•
• • • • Neo4j? •
Editor's Notes
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