This document lists publications by C. Harris spanning several domains: - Machine learning applications in data science and exploration/production, including stock price prediction and genomic/biomarker discovery. - Geophysics publications focused on seismic imaging techniques like migration, velocity modeling, and pay identification from well logs. - Medical/biology publications involving biomarker and gene expression studies for diseases like lupus, rheumatoid arthritis, and inflammatory bowel disease. Many publications involve predicting outcomes like cancer recurrence or response to treatment.

1. Data Science
Potential Pitfalls in Exploration and Production Applications of Machine Learning, C. Harris, SPE
Western North American and Rocky Mountain Joint Meeting, 2014, Denver, Colorado
Cross-validation techniques pivotal in ranking stock price prediction models. C Harris,
INFORMS 2010 Annual Meeting, Austin Texas, 2010
Biomarker Discovery Across Annotated and Unannotated Microarray Datasets Using
Semi-Supervised Learning. Cole Harris and Noushin Ghaffari, BMC Genomics 2008, 9
(Supp 2);S7
Multi-objective optimization in the concurrent mining of disparate genomic datasets, C
Harris and P Hraber, Genetic and Evolutionary Computation Conference, Washington
DC, 2005
Discriminant analysis with unlabeled and mislabeled training data, C. Harris, Neural
Information Systems Processing 2000 workshop: Using Unlabeled Data for Supervised
Learning, Breckenridge 2000, invited talk
Geophysics
From core analysis to log-based pay identification on the Delaware Basin Wolfcamp formation,
Hennenfent, G., Hegmann, M., Harris, C., Schwartz, K., Interpretation 3, 3(2015), p. SV35-SV44
Formation Evaluation and Basin Architecture of the Wolfcamp Shale in the Delaware Basin,
Hennenfent, G., Hegmann, M., Harris, C., Schwartz, K., Houston, Applied Geoscience
Conference 2015, Houston Geological Society, Feb 16, 2015
MITAS, migration input trace aperture selection, C. Harris, M. Marcoux, and S. Bickel,
SEG 68th Annual Meeting, New Orleans 1998, Expanded Abstracts p. 1373-1376
Aperture selection to improve Kirchhoff depth imaging using the maximum depth
principle, C. Harris, M. Marcoux, and S. Bickel, 60th Conference and Technical Meeting,
Leipzig 1998, Extended Abstracts vol 1, paper 1-56
Efficient depth migration for complex overburden by global inversion of RMO, C.
Harris, EAGE 59th Conference and Technical Meeting, Geneva 1997, Extended
Abstracts vol 1, paper A019
3-D prestack time migration and velocity - Depth modeling in GOM: E Cameron and
Vermilion, Drummie, S., Gibson, R., Harris, C., Marcoux, M., O'Donnell, D., Schonbeck,
S., Williams, R. G., Heron, S., Martin, J. and Putnam, M., 1996 66th Ann. Internat. Mtg:
Soc. of Expl. Geophys., 551-554.

2. Accurate 3D time migration focusing in regions of lateral velocity gradients, C. Harris,
EAGE 58th Conference and Technical Meeting, Amsterdam 1996, Extended Abstracts
vol. 1, paper X019
Velocity modelling for depth migration using exact-time migration, Marcoux, M. O.,
Harris, C., Chernis, L. and Whiting, P., 1995, 11th Geophysical Conference, Austr. Soc.
Expl. Geophys., 26, 461-467.
Depth migration and modeling from exact time migration, 64th Ann. Internat. Mtg:
Marcoux, M. O., Harris, C. and Chernis, L., 1994 Soc. of Expl. Geophys., 1647-1650.
Smooth velocity-depth models from exact time migration, Marcoux, M. O., Chernis, L.
and Harris, C., 1993, 63rd Ann. Internat. Mtg: Soc. of Expl. Geophys., 681-683.
Feasibility of exact time migration velocity inversion in 3D, C. Harris, SEG 65th Annual
Meeting, Houston 1995, Expanded Abstracts p. 1018-1021
Medicine/Biology
Measurement of Cell-Bound Complement Activation Products Enhances Diagnostic
Performance in Systemic Lupus Erythematosus, Kalunian K, Chatham W, Massarotti E, Reyes-
Thomas J, Harris C, Furie R, Chitkara P, Putterman C, Gross R, Somers E, Kirou K, Ramsey-
Goldman R, Hsieh C, Buyon J, Dervieux T, Weinstein A, Arthritis Rheum. December 2012;
64(12):4040-7
Gene Expression Signatures Predictive of Infliximab Response in IBD. C. Harris, J.
Alsobrook, L. Davis, American College of Gastroenterology Annual Meeting,
Washington, DC, 2011, presentation P725
Transcriptional Patterns in Whole Blood Diagnostic of Systemic Lupus Erythematosus.
T. Costello, C. Harris, American College of Rheumatology Annual Meeting, Chicago,
2011, presentation 2261
Combinations of Anti-Citrullinated Peptide Antibodies with Rheumatoid Factor Isotypes
Reveal an Attribute Associated with Disease Activity in Rheumatoid Arthritis Patients
Treated with Methtrexate. Thierry Dervieux, Cole Harris, Joel M. Kremer, American
College of Rheumatology Annual Meeting, Chicago, 2011, presentation 329
The Contribution of Cell Bound Complement Activation Products to the Diagnosis of
Systemic Lupus Erythematosus. K. C. Kalunian, W. Chatham, E. M. Massarotti, C.
Harris, R. A. Furie, J. P. Buyon, E. F. Chakravarty, E. C. Somers, P. Chitkara, R. L.
Gross, K. A. Kirou, J. Reyes-Thomas, R. Ramsey-Goldman, C. Hsieh, C. Putterman, T.
Dervieux, A. Weinstein, American College of Rheumatology Annual Meeting, Chicago,
2011, presentation 597

3. Accurate differentiation between Crohn's Disease and Ulcerative Colitis using novel
biomarkers from peripheral blood specimens. Cole Harris, Thomas Ma, Jonathan A.
Leighton, Thomas Williams, Allison Treloar, Lisa Davis, John Alsobrook II, American
College of Gastroenterology Annual Meeting, San Antonio, 2010, poster presentation
P318
An integrated picture of IBD derived from mapping novel multi-genic disease markers
onto regulatory pathways. Harris C, Alsobrook J, Davis, L, American College of
Gastroenterology Annual Meeting, San Diego, 2009, poster presentation P314
Amplification patterns of three genomic regions predict distant recurrence in breast
carcinoma. Davis LM, Harris C, Tang L, Doherty P, Hraber P, Sakai Y, Bocklage T,
Doeden K, Hall B, Alsobrook J, Rabinowitz I, Williams TM, Hozier J. J Mol Diagn.
2007 Jul;9(3):327-36.
Invasive ductal and invasive lobular carcinoma show a similar amplification profile of
chromosomal markers prognostic for breast carcinoma recurrence. Carmichael B, Davis
L, Harris C, Tang L, Doherty P, Alsobrook J, Williams TM, Doeden K, Hall B,
Rabinowitz I, Hozier J, Bocklage T., San Antonio Breast Cancer Symposium, San
Antonio, 2006, poster presentation
Prediction of Lymph Node Status Utilizing Selective Genomic Fluorescence In Situ
Hybridization Markers in Invasive Breast Carcinoma, KS Doeden, T Bocklage, C Harris,
L Davis, P Doherty, P Hraber, L Tang, B Hall, I Rabinowitz, T Williams, J Hozier,
United States and Canadian College of Pathology Annual Meeting, San Antonio, 2005,
poster presentation
Novel Tests Based on Genomic Markers, Assay Tutorial: Improving the Clinical Utility
of Testing for Breast Cancer Recurrence, Suzanne Mattingly, Ph.D., Lisa Davis, Ph.D.,
and Cole Harris, Genetic Engineering News, Volume 25, Number 16, September 15,
2005
Discovery of multiplex genomic markers for predicting breast cancer recurrence, Harris
C., San Antonio Breast Cancer Symposium, San Antonio, 2004, poster presentation
Validation of multiplex genomic markers for predicting breast cancer recurrence in a
FISH assay format, Harris C., Doherty P., Hraber P., Tang L., Davis L., Bocklage T.
Doeden K., Hall B., Rabinowitz I., Williams T., Hozier J., San Antonio Breast Cancer
Symposium, San Antonio, 2004, poster presentation
Integration of CGH data and microarray gene expression data aids in the discovery of
DNA-based diagnostic tumor markers, C. Harris, American Society of Human Genetics
Annual Meeting, Los Angeles, 2003, poster presentation

4. Biomarker Discovery: Clinical and Research Applications, C. Harris, Annual Spring
Bioinformatics Workshop 2002, National Center for Genome Resources, Santa Fe,
invited talk