Farnesoid x receptor (fxr) and intestinal mucosa - Stefano FiorucciAttività scientifica
Bile acids activated receptors regulate the integrity of gastrointestinal mucosafocus on FXR.
Stefano Fiorucci,
MD Department of Surgical and Biomedical Sciences
University of Perugia
For The Japanese Society of Gastroenterology (JSGE) COI Disclosure
The slides describe the relation between bile acids, intetsinal microbiota and bile acid activated receptors. Nuclear receptors and G-protein coupled receptors
Farnesoid x receptor (fxr) and intestinal mucosa - Stefano FiorucciAttività scientifica
Bile acids activated receptors regulate the integrity of gastrointestinal mucosafocus on FXR.
Stefano Fiorucci,
MD Department of Surgical and Biomedical Sciences
University of Perugia
For The Japanese Society of Gastroenterology (JSGE) COI Disclosure
The slides describe the relation between bile acids, intetsinal microbiota and bile acid activated receptors. Nuclear receptors and G-protein coupled receptors
A new effector pathway links ATM kinase with the DNA damage responseCostas Demonacos
The related kinases ATM (ataxia-telangiectasia mutated) and ATR (ataxia-telangiectasia and Rad3-related) phosphorylate a limited number of downstream protein targets in response to DNA damage. Here we report a new pathway in which ATM kinase signals the DNA damage response by targeting the transcriptional cofactor Strap. ATM phosphorylates Strap at a serine residue, stabilizing nuclear Strap and facilitating formation of a stress-responsive co-activator complex. Strap activity enhances p53 acetylation, and augments the response to DNA damage. Strap remains localized in the cytoplasm in cells derived from ataxia telangiectasia individuals with defective ATM, as well as in cells expressing a Strap mutant that cannot be phosphorylated by ATM. Targeting Strap to the nucleus reinstates protein stabilization and activates the DNA damage response. These results indicate that the nuclear accumulation of Strap is a critical regulator in the damage response, and argue that this function can be assigned to ATM through the DNA damage-dependent phosphorylation of Strap.
Comparative analysis of genome methylation in Thermotogae isolates from deep-...Thomas Haverkamp
The phylum Thermotogae is characterized by the presence of extensive horizontal gene transfer (HGT). Highly similar genes are shared between genomes of different Thermotogae genera, other phyla (Firmicutes) or other kingdoms such as the Archaea [1]. Many of these organisms proliferate in hot extreme environments such as oil fields and hydrothermal vents. How HGT functions in these ecosystems is unclear, but phages might play a role as a transfer agent of genetic material. Thermotogae genomes contain CRISPR repeats, which are part of the defence machinery against phages. Another defence mechanism against phages is the restriction modifications system and genes related to this are found as well in several Ther- motogae genomes. The restriction modification system uses methyltransferase proteins to methylate bases of the DNA strand. Under a phage attack, this system detects the non-meth- ylated foreign DNA and utilizes restriction enzymes to degrade invading DNA. With the advancement of single-molecule, real-time (SMRT) sequencing it has become possible to detect- ed N4-methylcytosine (m4C) and N6-methyladenine (m6A) bases in bacterial genomes. Here we use SMRT genome sequencing to compare four Thermotogae isolates from deep-sea hydrothermal vents and compare their defence system set-up, including CRISPRs and base modifications, in order to understand the probable response to invading DNA.

A new effector pathway links ATM kinase with the DNA damage responseCostas Demonacos
The related kinases ATM (ataxia-telangiectasia mutated) and ATR (ataxia-telangiectasia and Rad3-related) phosphorylate a limited number of downstream protein targets in response to DNA damage. Here we report a new pathway in which ATM kinase signals the DNA damage response by targeting the transcriptional cofactor Strap. ATM phosphorylates Strap at a serine residue, stabilizing nuclear Strap and facilitating formation of a stress-responsive co-activator complex. Strap activity enhances p53 acetylation, and augments the response to DNA damage. Strap remains localized in the cytoplasm in cells derived from ataxia telangiectasia individuals with defective ATM, as well as in cells expressing a Strap mutant that cannot be phosphorylated by ATM. Targeting Strap to the nucleus reinstates protein stabilization and activates the DNA damage response. These results indicate that the nuclear accumulation of Strap is a critical regulator in the damage response, and argue that this function can be assigned to ATM through the DNA damage-dependent phosphorylation of Strap.
Comparative analysis of genome methylation in Thermotogae isolates from deep-...Thomas Haverkamp
The phylum Thermotogae is characterized by the presence of extensive horizontal gene transfer (HGT). Highly similar genes are shared between genomes of different Thermotogae genera, other phyla (Firmicutes) or other kingdoms such as the Archaea [1]. Many of these organisms proliferate in hot extreme environments such as oil fields and hydrothermal vents. How HGT functions in these ecosystems is unclear, but phages might play a role as a transfer agent of genetic material. Thermotogae genomes contain CRISPR repeats, which are part of the defence machinery against phages. Another defence mechanism against phages is the restriction modifications system and genes related to this are found as well in several Ther- motogae genomes. The restriction modification system uses methyltransferase proteins to methylate bases of the DNA strand. Under a phage attack, this system detects the non-meth- ylated foreign DNA and utilizes restriction enzymes to degrade invading DNA. With the advancement of single-molecule, real-time (SMRT) sequencing it has become possible to detect- ed N4-methylcytosine (m4C) and N6-methyladenine (m6A) bases in bacterial genomes. Here we use SMRT genome sequencing to compare four Thermotogae isolates from deep-sea hydrothermal vents and compare their defence system set-up, including CRISPRs and base modifications, in order to understand the probable response to invading DNA.

Preliminary report describing a targeted sequencing study in 1500 MS cases and 1500 controls. I presented this at the ASHG 2011 session on large scale resequencing.
Shiladitya Sengupta, M.D., Assistant Professor of Medicine and Health Sciences and Technology, Harvard Medical School, Brigham & Women's Hospital: Personalized Medicine Approaches in Oncology.
Presented at New Frontiers in the Management of Solid and Liquid Tumors hosted by the John Theurer Cancer Center at Hackensack University Medical Center. jtcancercenter.org/CME
MaRS Future of Medicine™ Anticipating a world in which pharmaceutical compani...MaRS Discovery District
MaRS Future of Medicine™
Anticipating a world in which pharmaceutical companies outsource all R&D.
Drug development: Skating to where the puck is.
Speaker: Dr. Aled Edwards
An approach to describing and analysing bulk biological annotation quality: a...Michael Bell
Motivation:
Annotations are a key feature of many biological databases, used to convey our knowledge of a sequence to the reader. Ideally, annotations are curated manually, however manual curation is costly, time consuming and requires expert knowledge and training. Given these issues and the exponential increase of data, many databases implement automated annotation pipelines in an attempt to avoid un-annotated entries. Both manual and automated annotations vary in quality between databases and annotators, making assessment of annotation reliability problematic for users. The community lacks a generic measure for determining annotation quality and correctness, which we look at addressing within this work. Specifically we investigate word reuse within bulk textual annotations and relate this to Zipf's Principle of Least Effort. We use UniProt Knowledge Base (UniProtKB) as a case study to demonstrate this approach since it allows us to compare annotation change, both over time and between automated and manually curated annotations.
Results:
By applying power-law distributions to word reuse in annotation, we show clear trends in UniProtKB over time, which are consistent with existing studies of quality on free text English. Further, we show a clear distinction between manual and automated analysis and investigate cohorts of protein records as they mature. These results suggest that this approach holds distinct promise as a mechanism for judging annotation quality.
For more information available at the authors website: www.michaeljbell.co.uk
Rho kinase(ROCK) are a family of small signalling G-proteins and subfamily of Ras super family.
It forms signalling pathway for varios agonists like AT-ll,5-HT, ET-1,Histamine,TXA2.
AJS: a lethal weapon to combat with cancers Treatment of Human Cancers Using...gan-navi
Cdc6 is essential in the initiation of DNA replication:
A). Assembling pre-replication complex (pre-RC) with ORC, and loading MCMs to replication origins;
B). Licensing DNA replication to ensure one round DNA replication per cell cycle.
Il punto sul microbiota e le malattie umane- Covegno scientifico Attività scientifica
Il microbiota e le patologie umane- Perugia 20 aprile 2018- Convegno a Perugia-
Probiotici e trattamento delle patologie umane
Microbiota intestinale e malattie infiammatorie
Giornata di studio sul microbiota e patologie umane- Esperti a confronto sul ruolo dl microbiota nelle patologie dell' apparato digerente Perugia 20 aprile 2018
Meeting sul microbiota umano 20 aprile 2018
Focus su microbiota intestinale e malattie infiammatorie ed epatiche- Probiotici: come valutare un probiotico?
These slides describe the pathophysiology and the management of patients with liver cirrhosis and portal hypertension. The slides are at the level of post-graduate students
GPBAR1 (TGR5) regulates il 10 production from intestinal macrophages Attività scientifica
Novel therapeutic approach to intestinal inflammation by targeting GPBAR1 (TGR5) stimulates release of anti-inflammatory cytokine IL-10.
Just published in J. Immunology June 2017
Nuovo website:
www.gastroenterologia.unipg.it
disponibile da oggi per aggiornamenti, didattica, blog ed informazioni sulla sezione di gastroenterologia di Perugia
BILE ACID ACTIVATED RECEPTORS: FROM MEDICINAL CHEMISTRY TO CLINICAL APPLICATIONSAttività scientifica
A scientific meeting on bile acids and their receptors and clinical applications in liver and metabolic disorders will be held on Feb 9, 2016 in Perugia. Attendance is free.
Inf: stefano.fiorucci@unipg.it
Couples presenting to the infertility clinic- Do they really have infertility...Sujoy Dasgupta
Dr Sujoy Dasgupta presented the study on "Couples presenting to the infertility clinic- Do they really have infertility? – The unexplored stories of non-consummation" in the 13th Congress of the Asia Pacific Initiative on Reproduction (ASPIRE 2024) at Manila on 24 May, 2024.
Ethanol (CH3CH2OH), or beverage alcohol, is a two-carbon alcohol
that is rapidly distributed in the body and brain. Ethanol alters many
neurochemical systems and has rewarding and addictive properties. It
is the oldest recreational drug and likely contributes to more morbidity,
mortality, and public health costs than all illicit drugs combined. The
5th edition of the Diagnostic and Statistical Manual of Mental Disorders
(DSM-5) integrates alcohol abuse and alcohol dependence into a single
disorder called alcohol use disorder (AUD), with mild, moderate,
and severe subclassifications (American Psychiatric Association, 2013).
In the DSM-5, all types of substance abuse and dependence have been
combined into a single substance use disorder (SUD) on a continuum
from mild to severe. A diagnosis of AUD requires that at least two of
the 11 DSM-5 behaviors be present within a 12-month period (mild
AUD: 2–3 criteria; moderate AUD: 4–5 criteria; severe AUD: 6–11 criteria).
The four main behavioral effects of AUD are impaired control over
drinking, negative social consequences, risky use, and altered physiological
effects (tolerance, withdrawal). This chapter presents an overview
of the prevalence and harmful consequences of AUD in the U.S.,
the systemic nature of the disease, neurocircuitry and stages of AUD,
comorbidities, fetal alcohol spectrum disorders, genetic risk factors, and
pharmacotherapies for AUD.
Title: Sense of Smell
Presenter: Dr. Faiza, Assistant Professor of Physiology
Qualifications:
MBBS (Best Graduate, AIMC Lahore)
FCPS Physiology
ICMT, CHPE, DHPE (STMU)
MPH (GC University, Faisalabad)
MBA (Virtual University of Pakistan)
Learning Objectives:
Describe the primary categories of smells and the concept of odor blindness.
Explain the structure and location of the olfactory membrane and mucosa, including the types and roles of cells involved in olfaction.
Describe the pathway and mechanisms of olfactory signal transmission from the olfactory receptors to the brain.
Illustrate the biochemical cascade triggered by odorant binding to olfactory receptors, including the role of G-proteins and second messengers in generating an action potential.
Identify different types of olfactory disorders such as anosmia, hyposmia, hyperosmia, and dysosmia, including their potential causes.
Key Topics:
Olfactory Genes:
3% of the human genome accounts for olfactory genes.
400 genes for odorant receptors.
Olfactory Membrane:
Located in the superior part of the nasal cavity.
Medially: Folds downward along the superior septum.
Laterally: Folds over the superior turbinate and upper surface of the middle turbinate.
Total surface area: 5-10 square centimeters.
Olfactory Mucosa:
Olfactory Cells: Bipolar nerve cells derived from the CNS (100 million), with 4-25 olfactory cilia per cell.
Sustentacular Cells: Produce mucus and maintain ionic and molecular environment.
Basal Cells: Replace worn-out olfactory cells with an average lifespan of 1-2 months.
Bowman’s Gland: Secretes mucus.
Stimulation of Olfactory Cells:
Odorant dissolves in mucus and attaches to receptors on olfactory cilia.
Involves a cascade effect through G-proteins and second messengers, leading to depolarization and action potential generation in the olfactory nerve.
Quality of a Good Odorant:
Small (3-20 Carbon atoms), volatile, water-soluble, and lipid-soluble.
Facilitated by odorant-binding proteins in mucus.
Membrane Potential and Action Potential:
Resting membrane potential: -55mV.
Action potential frequency in the olfactory nerve increases with odorant strength.
Adaptation Towards the Sense of Smell:
Rapid adaptation within the first second, with further slow adaptation.
Psychological adaptation greater than receptor adaptation, involving feedback inhibition from the central nervous system.
Primary Sensations of Smell:
Camphoraceous, Musky, Floral, Pepperminty, Ethereal, Pungent, Putrid.
Odor Detection Threshold:
Examples: Hydrogen sulfide (0.0005 ppm), Methyl-mercaptan (0.002 ppm).
Some toxic substances are odorless at lethal concentrations.
Characteristics of Smell:
Odor blindness for single substances due to lack of appropriate receptor protein.
Behavioral and emotional influences of smell.
Transmission of Olfactory Signals:
From olfactory cells to glomeruli in the olfactory bulb, involving lateral inhibition.
Primitive, less old, and new olfactory systems with different path
These simplified slides by Dr. Sidra Arshad present an overview of the non-respiratory functions of the respiratory tract.
Learning objectives:
1. Enlist the non-respiratory functions of the respiratory tract
2. Briefly explain how these functions are carried out
3. Discuss the significance of dead space
4. Differentiate between minute ventilation and alveolar ventilation
5. Describe the cough and sneeze reflexes
Study Resources:
1. Chapter 39, Guyton and Hall Textbook of Medical Physiology, 14th edition
2. Chapter 34, Ganong’s Review of Medical Physiology, 26th edition
3. Chapter 17, Human Physiology by Lauralee Sherwood, 9th edition
4. Non-respiratory functions of the lungs https://academic.oup.com/bjaed/article/13/3/98/278874
Explore natural remedies for syphilis treatment in Singapore. Discover alternative therapies, herbal remedies, and lifestyle changes that may complement conventional treatments. Learn about holistic approaches to managing syphilis symptoms and supporting overall health.
ARTIFICIAL INTELLIGENCE IN HEALTHCARE.pdfAnujkumaranit
Artificial intelligence (AI) refers to the simulation of human intelligence processes by machines, especially computer systems. It encompasses tasks such as learning, reasoning, problem-solving, perception, and language understanding. AI technologies are revolutionizing various fields, from healthcare to finance, by enabling machines to perform tasks that typically require human intelligence.
Ozempic: Preoperative Management of Patients on GLP-1 Receptor Agonists Saeid Safari
Preoperative Management of Patients on GLP-1 Receptor Agonists like Ozempic and Semiglutide
ASA GUIDELINE
NYSORA Guideline
2 Case Reports of Gastric Ultrasound
The prostate is an exocrine gland of the male mammalian reproductive system
It is a walnut-sized gland that forms part of the male reproductive system and is located in front of the rectum and just below the urinary bladder
Function is to store and secrete a clear, slightly alkaline fluid that constitutes 10-30% of the volume of the seminal fluid that along with the spermatozoa, constitutes semen
A healthy human prostate measures (4cm-vertical, by 3cm-horizontal, 2cm ant-post ).
It surrounds the urethra just below the urinary bladder. It has anterior, median, posterior and two lateral lobes
It’s work is regulated by androgens which are responsible for male sex characteristics
Generalised disease of the prostate due to hormonal derangement which leads to non malignant enlargement of the gland (increase in the number of epithelial cells and stromal tissue)to cause compression of the urethra leading to symptoms (LUTS
Knee anatomy and clinical tests 2024.pdfvimalpl1234
This includes all relevant anatomy and clinical tests compiled from standard textbooks, Campbell,netter etc..It is comprehensive and best suited for orthopaedicians and orthopaedic residents.
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Ve...kevinkariuki227
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Verified Chapters 1 - 19, Complete Newest Version.pdf
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Verified Chapters 1 - 19, Complete Newest Version.pdf
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Ve...
Boston liver aasld
1. The 2004 AASLD Annual
Meeting Speaker Disclosure
Slide
I have no conflict of interest
2. The Methyl Trasnferase PRMT1 Functions As Co-
Activator of FXR/RXR and Regulates
Transcription of FXR Responsive Gene In
Hepatocytes.
Stefano Fiorucci1, Giovanni Rizzo1, Barbara Renga1,
Elisabetta Antonelli1, Eleonora Distrutti1, Mark
Pruzanski2; Antonio Morelli1, Roberto Pellicciari3
1
Departement of Internal Medicine,
Gastrointestinal and Liver Unit and
3
Department of Drug Technology,
University of Perugia, Italy
2
Intercept Pharmaceuticals, New York, NY
3. FARNESOID X RECEPTOR (FXR)
FXR is a ligand
Role of FXR in bile acid biosynthesis
activated NR that
regulates bile acid
synthesis and
excretion and lipid
homeostasis
FXR is expressed in
liver,kidney and
intestine
Target genes:
CYP7A1, SHP,
BSEP, MRP2,
MDR3, I-BABP
Mikishima M., et al. Science 1999; 284: 1362-65; Parks DJ., et al. Science 1999; 284: 1365-68
Goodwin B., et al. Molecular cell 2000; 6: 507-515
4. Background
FXR is an obligate partner of nuclear
RXR (Retinoid X Receptor)
In the presence of FXR ligands, the
FXR/RXR complex recruits members
of the p160 coactivator family that
acetylate histones
5. Background
In addition to acetylation, histone methylation
is critically involved in chromatin remodelling in
eukaryotic cells
PRMT(Protein aRginine MethylTransferase)-1
is the predominant, if not exclusive, H4
Arg3-methyltransferase in mammalian cells
PRMT1 functions as a coactivator for NRs
(thyroid, estrogen and androgen receptors..)
Kouzarides T. Current Opinion in Genetics & Develop 2002; 12: 198-209
6. FXR Crystal Structure In Complex
With 6-ECDCA
CO2H
FXR -LBD H
GW4064
6-ECDCA
150
+
Relative Luciferase/βGal
CDCA
HO OH π
100
50
0
-10 -9 -8 -7 -6 -5 -4
Agonist concentration (Log M)
6-
ECDCA
Mi L-Z., et al. Molecular Cell 2003; 11:1093-1100
7. Aims
Activation of FXR/RXR complex
recruits PRMT1
PRMT1 mediates the effects of FXR/RXR
ligands on target genes
10. In vitro methylation
293T cells (kidney fibroblast) were transiently
transfected with FXR, RXR and PRMT1
expression vectors and then induced
with FXR ligands
Cell lysates were Immunoprecipitated
with anti-FXR antiboby.
The immunoprecipitated were then used for
in vitro methylation by incubating them with
methyl 3H-methionine followed by
SDS page and fluorography
11. FXR/RXR posses H4 specific histone methylation activity
6-ECDCA - + - - + + +
In vitro H4
methylation
GST- IP:
IP anti-: PAS CD3 FXR CD3 FXR
PRMT1 anti-FXR
- + 6-ECDCA
WB: anti FXR
WB: anti RXR
WT
FXR/RXR
17. PRMT1 Enhances FXR Activation of The
BSEP Promoter by H4 Methylation
Immunochromatin precipitation (ChIP) was used to analyze
the promotorial context of FXR responsive gene promoter
in HepG2 cells cotransfected with FXR, RXR, PRMT1
expression vectors
ChIPs was performed with anti: FXR, PRMT1, dimethyl-
H4 (Arg3) and CytC. Immunoprecipitates were analyzed
by qRT-PCR to BSEP gene promoter (binds FXR)*
Ananthanarayanan M., et al., JBC 2001:276:28857
18. PRMT1 ENHANCES FXR ACTIVATION OF THE BSEP PROMOTER BY
H4 METHYLATION.
- + - + - + - + 6-ECDCA
BSEP Promoter
Met-H4
IP anti: FXR PRMT1 CytC
(Arg3)
HepG2 cells
FXR/RXR/PRMT1
IP anti: FXR Met-H4
PRMT1 CytC
(arg3)
19. Inhibition of Arginine Methyltransferase Activity
Decreases FXR-mediated Transcription
6E
MTA 6E MTA
+MTA
BSEP
β-actin
6E GW
HepG2 cells
NT MTA 6E GW
+MTA +MTA FXR/RXR/PRMT1
20. Conclusion
PRMT1 and histone methylation
pathways are implicated in the activation
of FXR responsive
genes with biological relevance
in the homeostasis
of bile acids and cholesterol
22. FXR/RXR Transactivation Induced By PRMT1
Is Enhanced by RXR Ligand 9-CIS RA
HepG2 cells
Rlu/βgal
NT 9-cis 6E 6E NT 9-cis 6E 6E
9-cis 9-cis
FXR/RXR Is a Permissive Heterodimer.
RXR ligand 9-cisRA induces
transactivation by PRMT1