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Lecture 1
Basics of Genetics
Part 1
Prepared by Animikha Ghosh
Contents
• Mendelian Genetics (Monohybrid and dihybrid cross)
• Incomplete dominance and Co-dominance
• Epistasis and Gene Interaction
• Multiple Allelism
• Some relevant terminologies
• Mutation
• Classification of Genetic disorders
Mendelian Genetics
• Mendel chose garden peas (Pisum sativum) for his experiment
because it is an annual plant with well defined characteristics
• It can be grown and cross easily
• Garden peas have perfect flowers , flowers that contain both female
and male parts
Want to know more about Gregor Mendel ?
Visit https://www.nature.com/scitable/topicpage/gregor-mendel-a-private-
scientist-6618227/
Source:
http://pinkmonkey.com/studyguides/su
bjects/biology-
edited/chap7/b0707501.asp
• Principle of segregation
• The paired genes (allelic pairs) separate from one another and
distributed to each sex cells
For more visit:
https://www.nature.com/scitable/definition/principle-of-
segregation-301/
• Codominance- When both alleles of genes are able to express equally in a heterozygote;
It is called codominance
• Incomplete dominance- The heterozygous product is intermediate between dominant
and recessive alleles
Source:
https://thebiologynotes.com/dihybrid-cross/
• Principle of independent assortment
• The chance of two and more independent events occurring together
is the product of their separate occurrences
For more visit
https://www.nature.com/scitable/definition/principle-of-independent-
assortment-law-of-independent-302/
Expansion of Binominal
Epistasis and Gene Interaction
• Epistasis is an interaction at the phenotypic level of organization. The genes that are involved in a specific epistatic interaction may
still show independent assortment at the genotypic level.
• In such cases, however, the phenotypic ratios may appear to deviate from those expected with independent assortment.
• In the first decade of the twentieth century, British geneticists William Bateson and R. C. Punnett conducted research showing that
the shape of the comb in chickens was caused by the interaction between two different genes.
• Wyandottes have a "rose" comb, Brahmas have a "pea" comb, and Leghorns have a "single" comb.
• When Bateson and Punnett crossed a Wyandotte chicken with a Brahma chicken, all of the F1 progeny had a new type of comb,
which the duo termed a "walnut" comb. In this case, neither the rose comb of the Wyandotte nor the pea comb of the Brahma
appeared to be dominant, because the F1 offspring had their own unique phenotype.
• F1 progeny were crossed with each other, some of the members of the resulting F2generation had walnut combs, some had rose
combs, some had pea combs, and some had a single comb, like that seen in Leghorns .
• Because the four comb shapes appeared in a 9:3:3:1 ratio (i.e., nine walnut chickens per every three rose chickens per every three
pea chickens per every one single-comb chicken), it seemed that two different genes must play a role in comb shape
• Bateson and Punnett deduced that Wyandotte (rose-combed) chickens must have the genotype RRpp, while Brahma chickens must
have the genotype rrPP.
• A cross between a Wyandotte and a Brahma would yield offspring that all had the RrPp genotype, which manifested as the walnut-
comb phenotype.
• any chicken with at least one rose-comb allele (R) and one pea-comb allele (P) would have a walnut comb
• when two F1 walnut chickens were crossed, the resulting F2 generation would yield rose-comb chickens (R_pp), pea-comb
chickens (rrP_), and walnut-comb chickens (R_P_), as well as chickens with a new, fourth phenotype—the single-comb phenotype
• Based on the process of elimination, it could be assumed that these single-comb chickens had the rrpp genotype
Multiple Allelism
• A population of species contains different alleles of a single genes. It is
not the case a gene can have only two alleles. Rather the basis of
population genetics is to study alleles present of the same gene in a
population of the same species.
• One of the best example of multiple alleles are wings of a butterfly. The
different color and pattern of butterfly exemplifies multiple allelism.
• Single Gene Disorders refer to change in single nucleotide
It could be further divided into
Autosomal Dominant Disorder
Autosomal Receissive Disorder
X linked Receissive disorder
X linked Dominant disorder
Terminologies
• DNA , full form is deoxyribonucleic acid, carries the
genetic information
• Adenine, thymine, cytosine, guanine
Adenine
Thymine
Guanine Cytosine
• Gene: A part of DNA or RNA sequence is called genes.
Generally Genes code for proteins
• Humans have 3 billion base pairs and only 25000 genes
• Alleles : A gene can have multiple alleles , alleles are basically
different form of the same gene
• Phenotype: Concerned with external/observable
characteristics
• Genotype: Genetic sequence of any particular characteristic
Source: Scitable, Nature
• Chromosomes: Genes are packaged into a structure called
chromosome
• Humans have 23 pairs of chromosome
• Of those 1 pair sex chromosome and 22 pair autosome
• Ploidy-The number of sets of chromosomes in a cell or an
organism.
• Haploid means one set, diploid means two set ,triploid means 3 set
and so on
• Polyploidy refers to more than 2
• Chromatins made up of DNA, in prophase of mitosis the chromatin
fibers become coiled into chromosome
• Chromatids: One of the two identical parts of chromosome
• Centromere: The point where two chromatids attach
• Nucleotide: Made up of Phosphate , Base ( purine and pyrimidine ) ,
Pentose sugar
• Nucleoside: Nucleotide- Phosphate
• Codon: adjacent 3 nucleotides
• It codes for a specific amino acids
• Congenital disease
A disease present at the time of birth
• Hereditary disease
Diseases which are transmitted through generations , mainly through
gametes
• Mutations: A permanent heritable change in a gene or
chromosomal structure and important in several diseases
• Chemical Causes
Nitrous Acid
Alkylating Agents
5-bromouracil
Anti viral drug iododeoxy uridine
Benzpyrene in tobacco smoke
• Physical Causes
X-rays & ultraviolet light
Certain virus such as bacterial viruses
• Types of mutations
Point mutation
Insertion/Deletion
Frameshift mutations
Trinucleotide repeat mutations
• Point mutation: substitution of a single nucleotide base with another
base
https://evolution.berkeley.edu/dna-and-
mutations/a-case-study-of-the-effects-of-
mutation-sickle-cell-anemia/
• Deletion/Insertion: Addition or deletion of single or multiple
nucleotide base in DNA sequence changes the reading frame of it
• Example of deletion is cystic fibrosis and example insertion is
Hemophilia A
• Frameshift mutation: Frameshift mutation involves insertion/deletion of
one or two base pairs changing the reading in the coding sequence
• As the coding message is read in triplets , it results in a nonsense sequence
of amino acids
Trinucleotide Repeat mutations
• Trinucleotides are triplets of nucleotides that are repeated in tandem
many times over. The number of repeats varies in different individuals
• An example is CAGCAGCAGCAGCAGCAG.... Or (CAG)n
• A form of mutation characterized by stretch of three nucleotides
Example: Fragile X syndrome
• Types of Genetic disorders
Single gene defects/Mendelian Disorders
Disorders with multifactorial or Polygenic Inheritance
Cytogenetic Disorders
Disorders showing atypical patterns of inheritance

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Basics of Genetics 1.pptx

  • 1. Lecture 1 Basics of Genetics Part 1 Prepared by Animikha Ghosh
  • 2. Contents • Mendelian Genetics (Monohybrid and dihybrid cross) • Incomplete dominance and Co-dominance • Epistasis and Gene Interaction • Multiple Allelism • Some relevant terminologies • Mutation • Classification of Genetic disorders
  • 3. Mendelian Genetics • Mendel chose garden peas (Pisum sativum) for his experiment because it is an annual plant with well defined characteristics • It can be grown and cross easily • Garden peas have perfect flowers , flowers that contain both female and male parts Want to know more about Gregor Mendel ? Visit https://www.nature.com/scitable/topicpage/gregor-mendel-a-private- scientist-6618227/
  • 5.
  • 6. • Principle of segregation • The paired genes (allelic pairs) separate from one another and distributed to each sex cells For more visit: https://www.nature.com/scitable/definition/principle-of- segregation-301/
  • 7. • Codominance- When both alleles of genes are able to express equally in a heterozygote; It is called codominance • Incomplete dominance- The heterozygous product is intermediate between dominant and recessive alleles
  • 9. • Principle of independent assortment • The chance of two and more independent events occurring together is the product of their separate occurrences For more visit https://www.nature.com/scitable/definition/principle-of-independent- assortment-law-of-independent-302/
  • 11.
  • 12. Epistasis and Gene Interaction • Epistasis is an interaction at the phenotypic level of organization. The genes that are involved in a specific epistatic interaction may still show independent assortment at the genotypic level. • In such cases, however, the phenotypic ratios may appear to deviate from those expected with independent assortment. • In the first decade of the twentieth century, British geneticists William Bateson and R. C. Punnett conducted research showing that the shape of the comb in chickens was caused by the interaction between two different genes. • Wyandottes have a "rose" comb, Brahmas have a "pea" comb, and Leghorns have a "single" comb. • When Bateson and Punnett crossed a Wyandotte chicken with a Brahma chicken, all of the F1 progeny had a new type of comb, which the duo termed a "walnut" comb. In this case, neither the rose comb of the Wyandotte nor the pea comb of the Brahma appeared to be dominant, because the F1 offspring had their own unique phenotype. • F1 progeny were crossed with each other, some of the members of the resulting F2generation had walnut combs, some had rose combs, some had pea combs, and some had a single comb, like that seen in Leghorns . • Because the four comb shapes appeared in a 9:3:3:1 ratio (i.e., nine walnut chickens per every three rose chickens per every three pea chickens per every one single-comb chicken), it seemed that two different genes must play a role in comb shape • Bateson and Punnett deduced that Wyandotte (rose-combed) chickens must have the genotype RRpp, while Brahma chickens must have the genotype rrPP. • A cross between a Wyandotte and a Brahma would yield offspring that all had the RrPp genotype, which manifested as the walnut- comb phenotype. • any chicken with at least one rose-comb allele (R) and one pea-comb allele (P) would have a walnut comb • when two F1 walnut chickens were crossed, the resulting F2 generation would yield rose-comb chickens (R_pp), pea-comb chickens (rrP_), and walnut-comb chickens (R_P_), as well as chickens with a new, fourth phenotype—the single-comb phenotype • Based on the process of elimination, it could be assumed that these single-comb chickens had the rrpp genotype
  • 13. Multiple Allelism • A population of species contains different alleles of a single genes. It is not the case a gene can have only two alleles. Rather the basis of population genetics is to study alleles present of the same gene in a population of the same species. • One of the best example of multiple alleles are wings of a butterfly. The different color and pattern of butterfly exemplifies multiple allelism.
  • 14. • Single Gene Disorders refer to change in single nucleotide It could be further divided into Autosomal Dominant Disorder Autosomal Receissive Disorder X linked Receissive disorder X linked Dominant disorder
  • 15. Terminologies • DNA , full form is deoxyribonucleic acid, carries the genetic information • Adenine, thymine, cytosine, guanine Adenine Thymine Guanine Cytosine
  • 16. • Gene: A part of DNA or RNA sequence is called genes. Generally Genes code for proteins • Humans have 3 billion base pairs and only 25000 genes • Alleles : A gene can have multiple alleles , alleles are basically different form of the same gene
  • 17. • Phenotype: Concerned with external/observable characteristics • Genotype: Genetic sequence of any particular characteristic
  • 19. • Chromosomes: Genes are packaged into a structure called chromosome • Humans have 23 pairs of chromosome • Of those 1 pair sex chromosome and 22 pair autosome
  • 20. • Ploidy-The number of sets of chromosomes in a cell or an organism. • Haploid means one set, diploid means two set ,triploid means 3 set and so on • Polyploidy refers to more than 2
  • 21. • Chromatins made up of DNA, in prophase of mitosis the chromatin fibers become coiled into chromosome • Chromatids: One of the two identical parts of chromosome • Centromere: The point where two chromatids attach
  • 22. • Nucleotide: Made up of Phosphate , Base ( purine and pyrimidine ) , Pentose sugar • Nucleoside: Nucleotide- Phosphate
  • 23. • Codon: adjacent 3 nucleotides • It codes for a specific amino acids
  • 24. • Congenital disease A disease present at the time of birth • Hereditary disease Diseases which are transmitted through generations , mainly through gametes
  • 25. • Mutations: A permanent heritable change in a gene or chromosomal structure and important in several diseases • Chemical Causes Nitrous Acid Alkylating Agents 5-bromouracil Anti viral drug iododeoxy uridine Benzpyrene in tobacco smoke • Physical Causes X-rays & ultraviolet light Certain virus such as bacterial viruses
  • 26. • Types of mutations Point mutation Insertion/Deletion Frameshift mutations Trinucleotide repeat mutations
  • 27. • Point mutation: substitution of a single nucleotide base with another base https://evolution.berkeley.edu/dna-and- mutations/a-case-study-of-the-effects-of- mutation-sickle-cell-anemia/
  • 28. • Deletion/Insertion: Addition or deletion of single or multiple nucleotide base in DNA sequence changes the reading frame of it • Example of deletion is cystic fibrosis and example insertion is Hemophilia A
  • 29. • Frameshift mutation: Frameshift mutation involves insertion/deletion of one or two base pairs changing the reading in the coding sequence • As the coding message is read in triplets , it results in a nonsense sequence of amino acids
  • 30. Trinucleotide Repeat mutations • Trinucleotides are triplets of nucleotides that are repeated in tandem many times over. The number of repeats varies in different individuals • An example is CAGCAGCAGCAGCAGCAG.... Or (CAG)n • A form of mutation characterized by stretch of three nucleotides Example: Fragile X syndrome
  • 31. • Types of Genetic disorders Single gene defects/Mendelian Disorders Disorders with multifactorial or Polygenic Inheritance Cytogenetic Disorders Disorders showing atypical patterns of inheritance