Cell synchronization helps in obtaining distinct sub population of cells representing different stages of cell cycle.It helps in collecting population wide data of cells progressing through various stages of cell cycle. Immortalization, refers to cells having capability of undergoing cell division infinitely. Immortal cells are particularly preferred in cell culture to enable long time storage and use. This presentation teaches about cell synchronization, methods of cell synchronization, cellular transformation, immortalization and mechanism of immortalization.
As opposed to common belief, the measurement of growth in cell culture is fairly simple. Most of the tecchniques that are applied for measurement of microbial growth can be applied to cell culture.Of course with some modification. This presentation exactly explains growth measurement techniques with respect to cell culture. At the end you will also find sample multiple choice questions for practice.
Introduction
Primary Culture
Steps In Primary Culture
Isolation Of Tissue
Dissection And/Or Disaggregation
Types Of Primary Culture
Primary Explant Culture
Enzymatic Disaggregation
Mechanical Disaggregation
Cell Line( Finite & Continuous)
Naming A Cell Line
Choosing A Cell Line
Maintenance Of Cell Line
Conclusion
reference
A brief presentation on cell counting and cell viability assays. For cell cytotoxicity assays, you can check my profile where I have uploaded a separate file.
Prepared in July 2015
Cellular coning refers to generation of genetically identical cells from parent cells. This presentation teaches differences between cell coning and molecular cloning and various methods of cell cloning. Sample questions are also provided for your review of concept learned
Cell synchronization helps in obtaining distinct sub population of cells representing different stages of cell cycle.It helps in collecting population wide data of cells progressing through various stages of cell cycle. Immortalization, refers to cells having capability of undergoing cell division infinitely. Immortal cells are particularly preferred in cell culture to enable long time storage and use. This presentation teaches about cell synchronization, methods of cell synchronization, cellular transformation, immortalization and mechanism of immortalization.
As opposed to common belief, the measurement of growth in cell culture is fairly simple. Most of the tecchniques that are applied for measurement of microbial growth can be applied to cell culture.Of course with some modification. This presentation exactly explains growth measurement techniques with respect to cell culture. At the end you will also find sample multiple choice questions for practice.
Introduction
Primary Culture
Steps In Primary Culture
Isolation Of Tissue
Dissection And/Or Disaggregation
Types Of Primary Culture
Primary Explant Culture
Enzymatic Disaggregation
Mechanical Disaggregation
Cell Line( Finite & Continuous)
Naming A Cell Line
Choosing A Cell Line
Maintenance Of Cell Line
Conclusion
reference
A brief presentation on cell counting and cell viability assays. For cell cytotoxicity assays, you can check my profile where I have uploaded a separate file.
Prepared in July 2015
Cellular coning refers to generation of genetically identical cells from parent cells. This presentation teaches differences between cell coning and molecular cloning and various methods of cell cloning. Sample questions are also provided for your review of concept learned
Applications of fish celllines by B.pptxB. BHASKAR
Recent research studies on fish cell lines found many more application of cell lines pathological studies, toxicology, biomedical research, vaccine development etc
This slide explains the various basic aspect of animal cell culture, cell line and cell strain, initiation and maintenance of primary cell culture, characteristic of primary cell culture and their applications. It also contains MCQs for practice.
Contains everything about cell culture and cell culture laboratory. The data has been collected from various sources and piled up to make this presentation.
Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...Studia Poinsotiana
I Introduction
II Subalternation and Theology
III Theology and Dogmatic Declarations
IV The Mixed Principles of Theology
V Virtual Revelation: The Unity of Theology
VI Theology as a Natural Science
VII Theology’s Certitude
VIII Conclusion
Notes
Bibliography
All the contents are fully attributable to the author, Doctor Victor Salas. Should you wish to get this text republished, get in touch with the author or the editorial committee of the Studia Poinsotiana. Insofar as possible, we will be happy to broker your contact.
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
The use of Nauplii and metanauplii artemia in aquaculture (brine shrimp).pptxMAGOTI ERNEST
Although Artemia has been known to man for centuries, its use as a food for the culture of larval organisms apparently began only in the 1930s, when several investigators found that it made an excellent food for newly hatched fish larvae (Litvinenko et al., 2023). As aquaculture developed in the 1960s and ‘70s, the use of Artemia also became more widespread, due both to its convenience and to its nutritional value for larval organisms (Arenas-Pardo et al., 2024). The fact that Artemia dormant cysts can be stored for long periods in cans, and then used as an off-the-shelf food requiring only 24 h of incubation makes them the most convenient, least labor-intensive, live food available for aquaculture (Sorgeloos & Roubach, 2021). The nutritional value of Artemia, especially for marine organisms, is not constant, but varies both geographically and temporally. During the last decade, however, both the causes of Artemia nutritional variability and methods to improve poorquality Artemia have been identified (Loufi et al., 2024).
Brine shrimp (Artemia spp.) are used in marine aquaculture worldwide. Annually, more than 2,000 metric tons of dry cysts are used for cultivation of fish, crustacean, and shellfish larva. Brine shrimp are important to aquaculture because newly hatched brine shrimp nauplii (larvae) provide a food source for many fish fry (Mozanzadeh et al., 2021). Culture and harvesting of brine shrimp eggs represents another aspect of the aquaculture industry. Nauplii and metanauplii of Artemia, commonly known as brine shrimp, play a crucial role in aquaculture due to their nutritional value and suitability as live feed for many aquatic species, particularly in larval stages (Sorgeloos & Roubach, 2021).
DERIVATION OF MODIFIED BERNOULLI EQUATION WITH VISCOUS EFFECTS AND TERMINAL V...Wasswaderrick3
In this book, we use conservation of energy techniques on a fluid element to derive the Modified Bernoulli equation of flow with viscous or friction effects. We derive the general equation of flow/ velocity and then from this we derive the Pouiselle flow equation, the transition flow equation and the turbulent flow equation. In the situations where there are no viscous effects , the equation reduces to the Bernoulli equation. From experimental results, we are able to include other terms in the Bernoulli equation. We also look at cases where pressure gradients exist. We use the Modified Bernoulli equation to derive equations of flow rate for pipes of different cross sectional areas connected together. We also extend our techniques of energy conservation to a sphere falling in a viscous medium under the effect of gravity. We demonstrate Stokes equation of terminal velocity and turbulent flow equation. We look at a way of calculating the time taken for a body to fall in a viscous medium. We also look at the general equation of terminal velocity.
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...Travis Hills MN
Travis Hills of Minnesota developed a method to convert waste into high-value dry fertilizer, significantly enriching soil quality. By providing farmers with a valuable resource derived from waste, Travis Hills helps enhance farm profitability while promoting environmental stewardship. Travis Hills' sustainable practices lead to cost savings and increased revenue for farmers by improving resource efficiency and reducing waste.
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
ISI 2024: Application Form (Extended), Exam Date (Out), EligibilitySciAstra
The Indian Statistical Institute (ISI) has extended its application deadline for 2024 admissions to April 2. Known for its excellence in statistics and related fields, ISI offers a range of programs from Bachelor's to Junior Research Fellowships. The admission test is scheduled for May 12, 2024. Eligibility varies by program, generally requiring a background in Mathematics and English for undergraduate courses and specific degrees for postgraduate and research positions. Application fees are ₹1500 for male general category applicants and ₹1000 for females. Applications are open to Indian and OCI candidates.
ISI 2024: Application Form (Extended), Exam Date (Out), Eligibility
Basic of animal cell culture part I
1. By:
Dr. Fahad Khan
Assistant Professor
Department of Biotechnology
Noida Institute of Engineering & Technology, Greater
Noida
Basic of Animal Cell Culture
2. Introduction to Cell Culture
History
Major Advancements
Applications
Terminologies
Types of cell culture
Cell culture media, types and Components
Factors affecting media
Basic requirements
Cell culture techniques, Disaggregation methods
Passaging
Cell counting and cell viability
Contamination
Cryopreservation
3. *Cell culture has become one of the major tools used in the life
sciences today.
*Cell culture involves the distribution of cells in an artificial
environment (in vitro) which is composed of the necessary
nutrients, ideal temperature, gases, pH and humidity to allow
the cells to grow and proliferate.
* In this procedure cells are directly isolated from body or
disaggregated by enzymatic or mechanical procedure or they
may be derived from cell lines or cell strains.
*This environment usually consists of a suitable glass or plastic
culture vessel containing a liquid or semisolid medium that
supplies the nutrients essential for survival & growth.
4. *1878: Claude Bernard proposed that physiological systems of an
organism can be maintained in a living system after the death of an
organism.
*1885: Roux maintained embryonic chick cells in a saline culture.
*1897: Loeb demonstrated the survival of cells isolated from blood and
connective tissue in serum and plasma.
*1907: Harrison cultivated frog nerve cells in a lymph clot and observed
the growth of nerve fibers in vitro for several weeks. He was considered
by some as the father of cell culture.
*1910: Burrows succeeded in long term cultivation of chicken embryo
cell in plasma clots. He made detailed observation of mitosis.
5. *
*1911: Lewis and Lewis made the first liquid media consisted of sea
water, serum, embryo extract, salts and peptones.
*1913: Carrel introduced strict aseptic techniques so that cells could be
cultured for long periods.
*1916: Rous and Jones introduced proteolytic enzyme trypsin for the
subculture of adherent cells.
*1940s: The use of the antibiotics penicillin & streptomycin in culture
medium decreased problem of contamination in cell culture.
*1948: Earle isolated mouse L fibroblasts which formed clones from
single cells.
*1952: G. O. Gey established a continuous cell line HeLa from a human
cervical carcinoma patient Henrietta Lacks.
*Dulbecco developed plaque assay for animal viruses using confluent
monolayers of cultured cells.
6. *
*1955: Eagle studied the nutrient requirements of selected cells in
culture & established first widely used chemically defined medium.
*1965: Harris and Watkins were able to fuse human and mouse cells
by the use of a virus.
*1975: Kohler and Milstein produced the first hybridoma capable of
secreting a monoclonal antibody.
*1978: Sato established the basis for the development of serum-free
media from cocktails of hormones and growth factors.
*1982: Human insulin became the first recombinant protein to be
licensed as a therapeutic agent.
*1985: Human growth hormone produced from recombinant
bacteria was accepted for therapeutic use.
7. *First development was the use of antibiotics which inhibits
the growth of contaminants.
*Second was the use of trypsin to remove adherent cells to
subculture further from the culture vessel.
*Third was the use of chemically defined culture medium.
8. Areas where cell culture technology is currently playing a
major role:
Model systems for:
*Studying basic cell biology, interactions between disease causing
agents and cells, effects of drugs on cells, process and triggering of
aging & nutritional studies.
Toxicity testing:
*Study the effects of new drugs.
Cancer research
*Study the function of various chemicals, virus & radiation to
convert normal cultured cells to cancerous cells.
9. *
Virology
*Cultivation of virus for vaccine production.
*Also used to study their infectious cycle.
Genetic Engineering
*Production of commercial proteins, large scale production of
viruses for use in vaccine production e.g. polio, rabies, chicken
pox, hepatitis B & measles.
Gene therapy
*Cells having a functional gene can be replaced to cells which are
having non-functional gene
10. *Controlled and defined physiological conditions.
*Cell homogeneity can be done by serial passages.
*Requirement of reagents and chemicals in smaller quantities than
in vivo experiment.
*Ethical, social and legal issues are less in comparison to
animal/human experiment.
Disadvantages:
• Expertise is required for doing animal cell culture.
• More expensive technique as compared to animal tissue.
• Unstable chromosome may be achieved.
11. *Primary Cell Culture: When cells are surgically removed from an
organism and placed into a suitable culture environment they will
attach, divide and grow.
*Cell Line: When the primary culture is subcultured and they
show an ability to continuously propagate.
*Anchorage dependency: Cells grow as monolayers adhering
to the substrate (glass/ plastic)
*Passaging/subculturing: The process of splitting the cells.
*Finite cells: When the cells has finite life span.
*Continuous cell lines: When the cells can grow upto infinite
lifespan.
*Confluent: Situation wherein cells completely cover the
substrate
13. *Once live cells are isolated and separated from an individual
and placed into a suitable culture environment, these cells will
attach, proliferate and grow.
*Primary cell culture is the maintenance and growth of cells
dissociated from the primary or original tissue like liver, blood
or kidney.
*Cell are isolated by using enzymatic and /or mechanical
methods and cultures in specialized nutrient rich culture
medium in suitable glass or plastic containers.
*Cells grown in primary cell culture usually have the same
morphology and karyotype as the tissue they have been
originated from.
*Examples: Mouse embryos, Chick embryos, Human biopsy
materials
14. Depending on the type of cells growing in culture, primary cell culture can
be of two types- Adherent and Suspension:
Adherent cell culture:
*In this type of culture, adherent cells are generally obtained from tissues
of immobile organs such as liver or kidney where these were immobile
and are fixed in connective tissue.
*These cells shows the requirement of attachment for growth as these cells
need solid surface for attachment and only then can grow. These cells are
called as anchorage dependent cells.
Suspension cell culture:
*Suspension cultures are obtained from cells of the free floating organ as
blood system since these cells are suspended in plasma for e.g.
lymphocytes.
*These cell types do not require any attachment or surface for growth and
are known as anchorage independent cells or suspension cells.
15. *When primary culture is passaged or sub-cultured, it becomes
secondary culture or cell line.
*Passaging or Subculture means removal of medium and transfer
of cells from previous culture vessel to another fresh culture
vessel with fresh growth medium.
*It is regularly required for the supply of fresh nutrients and
increasing space for continuously dividing cells.
*Subculturing of cells from one culture vessel to another involves
disassociating the adhered cells by using enzyme trypsin and
adding fresh growth media.
*It depends on the characteristics and growth rates of particular
cell types to decide the subculture or splitting ratio.
16. *On the basis of the life span of culture, the cell lines are categorized
into two types - finite or continuous depending upon whether it has
limited culture life span or it is immortal in culture.
Finite Cell Lines:
*Cell lines which grows for a limited life span and have limited
number of cell divisions (around 20 - 80 population doublings or
subcultures) are known as finite cell lines.
*The factors which manage the division of these cells in vitro are
related to the type and differentiation level of the starting cell type.
Continuous Cell Lines:
*Those cell line which get transformed or immortalized either
automatically or manually during subcultures under in vitro culture
conditions changes into continuous cell lines.
*These types of cell lines gains potential for sub culturing
indefinitely, becomes anchorage independent, lack contact
inhibition, and accumulate aneuploidy or heteroploidy.
17. Cell line Organism Origin Tissue
HeLa Human Cervical cancer
293-T Human Kidney (embryonic)
A-549 Human Lung carcinoma
CHO Hamster Ovary
DU145 Human Prostate Cancer
Cervical
Cancer HeLa
cell line
Normal
HEK293 cells