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Artificial Intelligence (AI) at the service of Laboratories
#LaboratoireduFutur …?
Thinking the Laboratory of the Future and Factory of
the Future …it’s taking the measure of this mutation
induced by A.I.
➢ The Mission of the GT #LaboratoireduFutur of the Society of Chemical Experts of France
▪ enlighten you on the mysteries of A.I
▪ make you aware of the importance of the exploitation and manipulation of data
▪ become aware of the design and usefulness of a range of AI applications
EXPERTSCIENCE
Neural networks…
Machine learning algorithms...
Generative AI…
A.I. and Laboratory
the advent of Artificial
intelligence (A.I.)
…at the heart of a new revolution
for the Laboratory ?
EXPERTSCIENCE
Artificial Intelligence (A.I.) ?...
Artificial intelligence (A.I.)…
“it is the set of techniques allowing machines to accomplish tasks and. to solve
problems normally reserved for humans and certain animals”
A.I. includes 3 categories :
1 - Symbolic I.A.: algorithms based on
of rules (Expert Systems)
2 - Connectionist AI: the algorithms
learning with neural network
3 - Generative AI (GPT) networks
neurons with Transformer & variant.
Transformer
EXPERTSCIENCE
Symbolic A.I : Expert Systems…
Expert systems (S.E) :
➢ Encapsulate expert knowledge
in the form of rules (if X then Y)
➢Have an inference mechanism
➢ Use this knowledge to solve problems
problems and automate the processing of
process
➢ Have evolved according to different models of
representation
semantics, conceptual graph, tree
decisions, computer languages
(Examples of S.E: prospector Mycin, Dendral)
EXPERTSCIENCE
The enigmatic Meta-Dendral Expert System
for chemists…for a long time 1965 ! in
LABORATORIES!
Allows constituents to be identified
chemicals,Molecules of a material from its
mass spectrum.
Use the rule: “if the spectrum of the molecule
presents 2 peaks X1 and X2 such that X1-X2=
M+28
…then the Molecule contains a ketone group.”
This S.E (E.S.) is the first algorithm that models
the knowledge of an expert chemist analyst
EXPERTSCIENCE
Connectionist AI: Machine Learning
artificial neural network...
✓ Connectionist AI imitates the basic architecture of the brain
✓ Artificial neural networks can receive and transmit information
▪ Artificial neuron is a mathematical function that mimics the biological neuron with its
hardware
EXPERTSCIENCE
Connectionist AI : the machine learns then
solves
▪ Learning phase feeds the algorithm with multiple characteristic examples
▪ Prediction phase
▪ Test phase Response/prediction quality
EXPERTSCIENCE
From machine learning to deep learning
thanks to the multi-layer deep neural network
▪ Ability to solve complex problems “Deep learning” Yann Le Cun
▪ Requirements of :
• Calculation capabilities (graphics processors)
• Availability of large quantities of data for training the algorithm
▪ Neural network optimization (synaptic weights, activation thresholds, etc. gradient backpropagation)
The machine discovers the characteristics itself and is then able to capture the relationship between
entrance and exit.
EXPERTSCIENCE
Deep learning at the heart of a disruption for Laboratories
in biochemistry and molecular and structural biology
o The problem: Impossible to read the 3D structure in an amino acid sequence
after folding of a protein
o The solution:
AlphaFold Deep Learning algorithm successfully wins the CASP in 2021 (
Critical Assessment Proteins structure Prediction) with GDT (Global Distant Test) > 92
EXPERTSCIENCE
The A.I. a new challenge for
Laboratories: the AlphaFold revolution
Google Deep-Mind in partnership with EMBL (European Molecular Biology Laboratory) has developed
AlphaFold
From July 2021 to July 2022 the AlphaFold database of 3D protein structures has been multiplied
by X 200
DeepMind and EMBL
release the most
complete database of
predicted 3D
structures of human
proteins
EXPERTSCIENCE
New approach & Performance of AI: the
AlphaFold revolution
The acquired knowledge of the structure in space of these molecules which are
proteins provide information on their function in living organisms
° This result can be appreciated as an
approach combining:
- training data: a corpus of data from
sequencing amino acids and some
3D structures established by the
techniques X-ray crystallography and cryo-
microscopy electronic
- the capacity of the AI ​​(AlphaFold): to
decipher the link uniting primary/tertiary
structure
EXPERTSCIENCE
ARTIFICIAL INTELLIGENCE CHALLENGES FOR
LABORATORIES IN THE COMING YEARS…?
Its integration as a solution to optimize the operation of a growing number of
industrial processes and R&D
A.I. technologies will be installed discreetly in the gaps where they
actually create value
courbe de Gartner
( hype cycle )
The A.I. ​​Matrix of the laboratory of the future:
the Ingredients…and the principle :
EXPERTSCIENCE
Datasets – Model – Cost Function
▪ Parametric Models :
- decision tree
- regression
- neural network
Sense
Translation
Text
Neural network
Viscosity
Property
Structure
Moleculaire
Neural Network: AI and Prediction Property
Chemical Diversion natural language analysis
EXPERTSCIENCE @ Emmanuel Frenod See-D
1- Chemistry and Biochemistry are scientific disciplines which study:
composition, structure, material properties as well as reactions
chemicals that take place between them
2- There are different types of data commonly used in chemistry,
biochemistry
3- A.I. with ML (Machine – Learning) methods makes it possible to
new exploration of this data to valorize it
EXPERTSCIENCE
Chemistry, Biochemistry and Artificial Intelligence…?
Artificial Intelligence (AI) can be used to:
-> Classify molecules
-> Predict Physical, Biochemical Properties
-> Discover new Molecules, Materials
A.I. and exploitation of laboratory data
…Key to How Alpha Fold Works
EXPERTSCIENCE
Protéine
Réseau Neurones
Données
GDT
SCORE
Structure 3D
@fxcoudert E.N.S.
Valorization and exploitation of data
Laboratory and AI: training data, learning and
exploitation
Machine Learning Model…
Databases Laboratories
Learning
Training
of the Model
Use of the Model: solubility prediction, enthalpy etc.
EXPERTSCIENCE
Chemistry & AI (ML supervised learning)… Performance
in the prediction of structure/property relationships…
3 possibilities:
- Lab Experience
- Theoretical
Chemistry
- Machine Learning
The 3rd way if you have enough data to train
a Model accelerates structure/property prediction
Performance = Weeks / Hours / + Seconds
EXPERTSCIENCE
AI and New Methodological Approaches for control
of Chemical Risk: alternative methods QSAR / QSPR) uses of
neural networks, supervised and unsupervised AI Machine Learning
Use of Neural Networks, AI Machine Learning.
@Guillaume Fayet INERIS
EXPERTSCIENCE
IDENTIFICATION of Contaminants…thousands of entities !
from the human loop… to the application of A.I. & Machine
Learning > REX from INERIS
@Guillaume Fayet INERIS
EXPERTSCIENCE
A.I. APPROACH and HRMS Analysis of Contaminants…
… construction of a MODEL from identification characteristics
particular in the spectra
GAINS: +> extended database
+> work + exhaustive & + fast
EXPERTSCIENCE
@Guillaume Fayet
INERIS
A.I. & Process Intensification by Microfluidics…
orchestrated laboratory : synthesis, characterization,
modeling, databases and A.I.
EXPERTSCIENCE
The Integration of A.I. in Laboratories…
…Revolutionises sample processing
EXPERTSCIENCE
1- the example of PhénoMatrix: AI embedded in an automated system of
sample processing in Microbiology
2- an image processing algorithm (Deep Learning) works from a
panel 5000 images provided by the laboratory learns and analyzes the
images implementing the best strategies for detecting relevant elements for
classify images
3- Thanks to advanced artificial intelligence (AI), the software pre-
evaluates and pre-automatically sorts culture plates allowing laboratories to
microbiology to read, interpret and separate bacterial cultures
Robotic Process Automation
1- Generative AI = exploits AI techniques to
generate content (texts, images, sound and even code)
2- 2000 Language Model (LLM) key concept is formulated
= model capable of predicting the next word in a sentence
= vector representation of words with coordinates in semantic space
3- 2022 arrival of ChatGPT(GPT=Generative PretainedTransformer)
= Algorithm capable of learning contextualized word representations
= Probabilistic statistical models that determine the arrangement,
distribution of words based on massive data ingested during their training
Generative A.I. in Laboratories… a new deal for the profession
>> Bing GPT4 – Bibliographie
-- solver d’equation
Microsoft openAI , Anthropic Amazon , Google
EXPERTSCIENCE
“The power of Machine – Learning Algorithms
opens a new era for the laboratory of the future! "
Yvon Gervaise
Artificial intelligence:
An opportunity for LABORATORIES !
a Collaboration…Between the Laboratorians
and A.I. SPECIALISTS
Advent of augmented LabTechnicians?
EXPERTSCIENCE
The A.I. : ​​Matrix of the Laboratory of the Future?
#LaboratoireduFutur To go further…
video replays of the entire #conferences of 2 symposiums >
and a link below >
TEST YOURSELF!!! LINK below
https://webtv.insa-rouen.fr/videos/laboratoire-du-futur-2-le-defi-de-lintelligence-artificielle/
https://www.mediachimie.org/ressource/chimie-et-intelligence-artificielle-colloque-
f%C3%A9vrier-2023
EXPERTSCIENCE
A.I. and Laboratory ? = The A.I. ​​Response !!!
Voici une réponse que j’ai obtenue à l’aide du nouveau Bing- GPT4 (Copilot)
.
LIEN : https://sl.bing.net/kEK4X1Fu6zA
EXPERTSCIENCE
Merci ! Thank You! let us keep in touch…
Yvon Gervaise https://www.linkedin.com/in/yvon-gervaise-22a1b035/
https://twitter.com/expertscience
Mail : expertscience.ygervaise@protonmail.com
Web: http://www.expertscience.fr
Tél : 06 60 67 91 50

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Artificial Intelligence IA at the service of Laboratories

  • 1. Artificial Intelligence (AI) at the service of Laboratories #LaboratoireduFutur …?
  • 2. Thinking the Laboratory of the Future and Factory of the Future …it’s taking the measure of this mutation induced by A.I. ➢ The Mission of the GT #LaboratoireduFutur of the Society of Chemical Experts of France ▪ enlighten you on the mysteries of A.I ▪ make you aware of the importance of the exploitation and manipulation of data ▪ become aware of the design and usefulness of a range of AI applications EXPERTSCIENCE
  • 3. Neural networks… Machine learning algorithms... Generative AI… A.I. and Laboratory the advent of Artificial intelligence (A.I.) …at the heart of a new revolution for the Laboratory ?
  • 4. EXPERTSCIENCE Artificial Intelligence (A.I.) ?... Artificial intelligence (A.I.)… “it is the set of techniques allowing machines to accomplish tasks and. to solve problems normally reserved for humans and certain animals” A.I. includes 3 categories : 1 - Symbolic I.A.: algorithms based on of rules (Expert Systems) 2 - Connectionist AI: the algorithms learning with neural network 3 - Generative AI (GPT) networks neurons with Transformer & variant. Transformer
  • 5. EXPERTSCIENCE Symbolic A.I : Expert Systems… Expert systems (S.E) : ➢ Encapsulate expert knowledge in the form of rules (if X then Y) ➢Have an inference mechanism ➢ Use this knowledge to solve problems problems and automate the processing of process ➢ Have evolved according to different models of representation semantics, conceptual graph, tree decisions, computer languages (Examples of S.E: prospector Mycin, Dendral)
  • 6. EXPERTSCIENCE The enigmatic Meta-Dendral Expert System for chemists…for a long time 1965 ! in LABORATORIES! Allows constituents to be identified chemicals,Molecules of a material from its mass spectrum. Use the rule: “if the spectrum of the molecule presents 2 peaks X1 and X2 such that X1-X2= M+28 …then the Molecule contains a ketone group.” This S.E (E.S.) is the first algorithm that models the knowledge of an expert chemist analyst
  • 7. EXPERTSCIENCE Connectionist AI: Machine Learning artificial neural network... ✓ Connectionist AI imitates the basic architecture of the brain ✓ Artificial neural networks can receive and transmit information ▪ Artificial neuron is a mathematical function that mimics the biological neuron with its hardware
  • 8. EXPERTSCIENCE Connectionist AI : the machine learns then solves ▪ Learning phase feeds the algorithm with multiple characteristic examples ▪ Prediction phase ▪ Test phase Response/prediction quality
  • 9. EXPERTSCIENCE From machine learning to deep learning thanks to the multi-layer deep neural network ▪ Ability to solve complex problems “Deep learning” Yann Le Cun ▪ Requirements of : • Calculation capabilities (graphics processors) • Availability of large quantities of data for training the algorithm ▪ Neural network optimization (synaptic weights, activation thresholds, etc. gradient backpropagation) The machine discovers the characteristics itself and is then able to capture the relationship between entrance and exit.
  • 10. EXPERTSCIENCE Deep learning at the heart of a disruption for Laboratories in biochemistry and molecular and structural biology o The problem: Impossible to read the 3D structure in an amino acid sequence after folding of a protein o The solution: AlphaFold Deep Learning algorithm successfully wins the CASP in 2021 ( Critical Assessment Proteins structure Prediction) with GDT (Global Distant Test) > 92
  • 11. EXPERTSCIENCE The A.I. a new challenge for Laboratories: the AlphaFold revolution Google Deep-Mind in partnership with EMBL (European Molecular Biology Laboratory) has developed AlphaFold From July 2021 to July 2022 the AlphaFold database of 3D protein structures has been multiplied by X 200 DeepMind and EMBL release the most complete database of predicted 3D structures of human proteins
  • 12. EXPERTSCIENCE New approach & Performance of AI: the AlphaFold revolution The acquired knowledge of the structure in space of these molecules which are proteins provide information on their function in living organisms ° This result can be appreciated as an approach combining: - training data: a corpus of data from sequencing amino acids and some 3D structures established by the techniques X-ray crystallography and cryo- microscopy electronic - the capacity of the AI ​​(AlphaFold): to decipher the link uniting primary/tertiary structure
  • 13. EXPERTSCIENCE ARTIFICIAL INTELLIGENCE CHALLENGES FOR LABORATORIES IN THE COMING YEARS…? Its integration as a solution to optimize the operation of a growing number of industrial processes and R&D A.I. technologies will be installed discreetly in the gaps where they actually create value courbe de Gartner ( hype cycle )
  • 14. The A.I. ​​Matrix of the laboratory of the future: the Ingredients…and the principle : EXPERTSCIENCE Datasets – Model – Cost Function ▪ Parametric Models : - decision tree - regression - neural network
  • 15. Sense Translation Text Neural network Viscosity Property Structure Moleculaire Neural Network: AI and Prediction Property Chemical Diversion natural language analysis EXPERTSCIENCE @ Emmanuel Frenod See-D
  • 16. 1- Chemistry and Biochemistry are scientific disciplines which study: composition, structure, material properties as well as reactions chemicals that take place between them 2- There are different types of data commonly used in chemistry, biochemistry 3- A.I. with ML (Machine – Learning) methods makes it possible to new exploration of this data to valorize it EXPERTSCIENCE Chemistry, Biochemistry and Artificial Intelligence…? Artificial Intelligence (AI) can be used to: -> Classify molecules -> Predict Physical, Biochemical Properties -> Discover new Molecules, Materials
  • 17. A.I. and exploitation of laboratory data …Key to How Alpha Fold Works EXPERTSCIENCE Protéine Réseau Neurones Données GDT SCORE Structure 3D @fxcoudert E.N.S. Valorization and exploitation of data
  • 18. Laboratory and AI: training data, learning and exploitation Machine Learning Model… Databases Laboratories Learning Training of the Model Use of the Model: solubility prediction, enthalpy etc. EXPERTSCIENCE
  • 19. Chemistry & AI (ML supervised learning)… Performance in the prediction of structure/property relationships… 3 possibilities: - Lab Experience - Theoretical Chemistry - Machine Learning The 3rd way if you have enough data to train a Model accelerates structure/property prediction Performance = Weeks / Hours / + Seconds EXPERTSCIENCE
  • 20. AI and New Methodological Approaches for control of Chemical Risk: alternative methods QSAR / QSPR) uses of neural networks, supervised and unsupervised AI Machine Learning Use of Neural Networks, AI Machine Learning. @Guillaume Fayet INERIS EXPERTSCIENCE
  • 21. IDENTIFICATION of Contaminants…thousands of entities ! from the human loop… to the application of A.I. & Machine Learning > REX from INERIS @Guillaume Fayet INERIS EXPERTSCIENCE
  • 22. A.I. APPROACH and HRMS Analysis of Contaminants… … construction of a MODEL from identification characteristics particular in the spectra GAINS: +> extended database +> work + exhaustive & + fast EXPERTSCIENCE @Guillaume Fayet INERIS
  • 23. A.I. & Process Intensification by Microfluidics… orchestrated laboratory : synthesis, characterization, modeling, databases and A.I. EXPERTSCIENCE
  • 24. The Integration of A.I. in Laboratories… …Revolutionises sample processing EXPERTSCIENCE 1- the example of PhénoMatrix: AI embedded in an automated system of sample processing in Microbiology 2- an image processing algorithm (Deep Learning) works from a panel 5000 images provided by the laboratory learns and analyzes the images implementing the best strategies for detecting relevant elements for classify images 3- Thanks to advanced artificial intelligence (AI), the software pre- evaluates and pre-automatically sorts culture plates allowing laboratories to microbiology to read, interpret and separate bacterial cultures Robotic Process Automation
  • 25. 1- Generative AI = exploits AI techniques to generate content (texts, images, sound and even code) 2- 2000 Language Model (LLM) key concept is formulated = model capable of predicting the next word in a sentence = vector representation of words with coordinates in semantic space 3- 2022 arrival of ChatGPT(GPT=Generative PretainedTransformer) = Algorithm capable of learning contextualized word representations = Probabilistic statistical models that determine the arrangement, distribution of words based on massive data ingested during their training Generative A.I. in Laboratories… a new deal for the profession >> Bing GPT4 – Bibliographie -- solver d’equation Microsoft openAI , Anthropic Amazon , Google EXPERTSCIENCE
  • 26. “The power of Machine – Learning Algorithms opens a new era for the laboratory of the future! " Yvon Gervaise Artificial intelligence: An opportunity for LABORATORIES ! a Collaboration…Between the Laboratorians and A.I. SPECIALISTS Advent of augmented LabTechnicians? EXPERTSCIENCE The A.I. : ​​Matrix of the Laboratory of the Future?
  • 27. #LaboratoireduFutur To go further… video replays of the entire #conferences of 2 symposiums > and a link below > TEST YOURSELF!!! LINK below https://webtv.insa-rouen.fr/videos/laboratoire-du-futur-2-le-defi-de-lintelligence-artificielle/ https://www.mediachimie.org/ressource/chimie-et-intelligence-artificielle-colloque- f%C3%A9vrier-2023 EXPERTSCIENCE A.I. and Laboratory ? = The A.I. ​​Response !!! Voici une réponse que j’ai obtenue à l’aide du nouveau Bing- GPT4 (Copilot) . LIEN : https://sl.bing.net/kEK4X1Fu6zA
  • 28. EXPERTSCIENCE Merci ! Thank You! let us keep in touch… Yvon Gervaise https://www.linkedin.com/in/yvon-gervaise-22a1b035/ https://twitter.com/expertscience Mail : expertscience.ygervaise@protonmail.com Web: http://www.expertscience.fr Tél : 06 60 67 91 50