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AGRICULTURAL LANDSCAPE SEGMENTATION 
a stochastic method to map heterogeneous variables 
Agricultural landscape segmentation • Rizzo et al. • Symposium 1
Researchgroup 
RIZZO Davide 
INRA SAD-ASTER 
Mirecourt(France) 
MARI Jean-François 
Universitéde Lorraine, LORIA & CNRS 
UMR 7503 
Vandoeuvre-lès-Nancy F-54506, France 
INRIA 
Villers-lès-Nancy, F-54600 France 
MARRACCINI Elisa 
ScuolaSuperioreSant’Anna 
Institute of Life Sciences Pisa (Italy) 
LAZRAK El Ghali 
INRA SAD-ASTER 
Mirecourt(France) 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 2
Introduction#1 | Agriculturallandscapemanagement 
Agricultural landscapes are composed of many land management units. 
Involved stakeholders or specific research foci can define these units differently 
Innovative approaches to address temporal and spatial dynamics using multiple data sources 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 3 
biblioat http://bit.ly/IALE2014 
Straume, 2014 Zantenet al., 2013 
Brown et al., 2013Rizzo et al., 2013
Introduction#2| Landscapeagronomy 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 4 
Agricultural land uses: 
randomly distributed among fields 
managed by farmers ? 
Understanding how 
spatial organization & temporal evolution 
of farming practices 
reveal logical processes and driving forces 
Benoît, Rizzo et al., 2012 
a major challenge for landscape agronomists 
biblioat http://bit.ly/IALE2014
Aim| context-wiselandscapesegmentation 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 6 
Arpentageis a HMM based software specifically developed to perform (un)supervised segmentations of agricultural landscapes 
Developed to map crop sequences as support to evaluate agricultural impact on water quality and on biodiversity 
Mari et al. 2013 
biblioat http://bit.ly/IALE2014 
Test this method in new contexts with an explicit landscape agronomic approach 
Profileof heterogeneousspatialdata insteadof (crop) time sequences 
Focus on abandonedareasin a Mediterraneanterracedlandscapedominatedby olive groves 
Mignolet2008 
Lazraket al. 2009 
Temporospatialmethod… 
…to maplandscaperegularities 
HMM= Hidden Markov Model
Methods#1 | Landscapesegmentation 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 7 
Mari et al. 2013, EMS • Lazraket al. 2009& Schaller et al. 2012, Lands Ecol 
biblioat http://bit.ly/IALE2014 
Space dominant 
sequenceof images 
Software for LUCC analysis generally implement unsupervised clustering on spatial entities based on space-dominant attributes 
Data mining approaches involving clustering of sequences allowed knowledge extraction to get a landscape description in terms of land-use patterns 
Time dominant 
image of sequences
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 8 
temporal segmentation 
Linear 
Ergodic* 
spatial segmentation (andtransition analysis) 
*all states are inter connected 
Markov chain 
land use of a given field in a year depends only on the land-use of the recent previous years in the same field. 
Markov random field 
land use of a given field depends only on the land-use of the neighboring fields 
probably the 1stsoftware in the agronomic area implementing a time-dominant model and processing time-space data. 
It relies on a stochastic principle to model time space landscape regularities on 2 Markovianassumptions 
free download: http://www.loria.fr/~jfmari/App 
Methods #2 | ArpentAge 
French acronym for: Landscape Regularities Analysis: Environment, Territory, Agronomy 
Arpenteris a French verb meaning to survey
Methods #3 | Approximating a MRF by a HMM 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 9 
the Hilbert-Peanofractalcurve isusedto approximatethe MarkovRamdomField (MRF) assumptionthrougha HiddenMarkovModel (HMM) 
a space filling curve allows to approximate the 2D as a simple chain 
Lazrak2012, PhD thesis 
biblioat http://bit.ly/IALE2014
Methods#4 | hierarchicalmodel 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 10 
HierarchicalHMM isstrictlyergodicto segment the landscapeintopatches of homogeneoustime sequences 
Each “super state” of a “super model” is a HMM (generally linear) to describe the (time) sequences 
Twostochasticprocessescan be represented, 
the first (hidden) driving 
the second(knwonand visible) 
HMM= Hidden Markov Model 
Combiningheterogeneousdata to deal with drivers of management dynamics(insteadof pixels) 
ArpentAgeinstead of clustering because “context- wise” (cf. fractal curve) 
Context-wiselandscapesegmentationfocusedon management relatedvariables
Materials#1 | studyarea: Monte Pisano 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 12 
Mediterranean terraced olive grove farming system (62 km2)
Materials#2 | input data 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 13 
Markov random field approximated to a hidden Markov model using a space-filling curve 
Layers were sampled on a 10m regular point grid 
Geology 
5 cl. 
• anthropic • alluvial & sand-loam sediments • quartzes • limestone • schist 
Orientation 
4 cl. 
N, S, E, W 
Morphology 
4 cl. 
• Plains • valleys • slopes • ridges 
Land cover 
14 cl. 
• Urban • garden 
• cultivated olive groves • abandoned olive groves • vineyards • orchards • arable lands • fallows • garigues• outcrops • wetland vegetation • water • pine wood • wood 
Terracetype 
5 cl. 
(bench) terraces • talwegs• pocket terraces • broad field terraces • extensive 
Dry-stonewalldensity 
6 cl. 
From 0to 44.5 m/ha (natural breaks)
Results#1 | an output map 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 15 
terraces 
talwegs 
extensive 
West exposedterraces 
periurban 
warmwoods 
coldwoods 
terracedgroves 
foothills 
hectares
Results#2 | variablesegmentation 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 16 
Three majorsmanagement regions: 
• Terracedgrovesmedium-high densityDSW on quartz, E-S orientedwith some gariguesand pine woods 
• Woodsmaydifferfor morphologyor exposition 
• Foothillsmaybe segmentedfor specificterracetypes, mix with urbanlandcover or plainmorphology 
The increasing segmentation allows to define a hierarchy of the variables 
Especially relevant for management issues 
periurban 
periurban
Results#3 | location of abandonedolive groves 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 17 
Eastern side 
prevalently associated to sand-loam sediment area, with low density terraced in valleys. 
A 
C 
B 
A 
B 
C 
Western side 
prevalently associated to the cluster grouping the foothills, with the prevalence of the anthropic bedrock and S-W exposition 
West exposedterraces 
periurban 
terracedgroves 
foothills
Conclusionsand perspectives 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 18 
Flexibilityof variables treated remote sensing map, census data, etc. 
Flexibilityof scale of analysis potentially no limit if input data are defined coherently to the research question 
variable choicee.g., what if we introduce proximity to road? 
input variable classificationtype and number of classes 
variable input qualitydifferent geometric scales 
HHMM parameterizationspacefillingcurve, numberof states 
Future applications could address the temporospatialcharacterization of agricultural practicesat the watershed scale 
Leverages… 
…and potentials
Participate! 
9th IALE World Congress 
July 5-10, 2015 
Portland, Oregon 
Landscape agronomy: advances and challenges of a new field addressing the management of rural land systems 
read more at 
http://bit.ly/IALE2015_Symposium_LA 
RIZZO Davide, 
FERGUSON Rafter Sass, 
BENOIT Marc, 
PADOA-SCHIOPPA Emilio 
contact & info ridavide@gmail.com 
IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 19

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Agricultural landscape segmentation: a stochastic method to map heterogeneous variables

  • 1. AGRICULTURAL LANDSCAPE SEGMENTATION a stochastic method to map heterogeneous variables Agricultural landscape segmentation • Rizzo et al. • Symposium 1
  • 2. Researchgroup RIZZO Davide INRA SAD-ASTER Mirecourt(France) MARI Jean-François Universitéde Lorraine, LORIA & CNRS UMR 7503 Vandoeuvre-lès-Nancy F-54506, France INRIA Villers-lès-Nancy, F-54600 France MARRACCINI Elisa ScuolaSuperioreSant’Anna Institute of Life Sciences Pisa (Italy) LAZRAK El Ghali INRA SAD-ASTER Mirecourt(France) IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 2
  • 3. Introduction#1 | Agriculturallandscapemanagement Agricultural landscapes are composed of many land management units. Involved stakeholders or specific research foci can define these units differently Innovative approaches to address temporal and spatial dynamics using multiple data sources IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 3 biblioat http://bit.ly/IALE2014 Straume, 2014 Zantenet al., 2013 Brown et al., 2013Rizzo et al., 2013
  • 4. Introduction#2| Landscapeagronomy IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 4 Agricultural land uses: randomly distributed among fields managed by farmers ? Understanding how spatial organization & temporal evolution of farming practices reveal logical processes and driving forces Benoît, Rizzo et al., 2012 a major challenge for landscape agronomists biblioat http://bit.ly/IALE2014
  • 5. Aim| context-wiselandscapesegmentation IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 6 Arpentageis a HMM based software specifically developed to perform (un)supervised segmentations of agricultural landscapes Developed to map crop sequences as support to evaluate agricultural impact on water quality and on biodiversity Mari et al. 2013 biblioat http://bit.ly/IALE2014 Test this method in new contexts with an explicit landscape agronomic approach Profileof heterogeneousspatialdata insteadof (crop) time sequences Focus on abandonedareasin a Mediterraneanterracedlandscapedominatedby olive groves Mignolet2008 Lazraket al. 2009 Temporospatialmethod… …to maplandscaperegularities HMM= Hidden Markov Model
  • 6. Methods#1 | Landscapesegmentation IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 7 Mari et al. 2013, EMS • Lazraket al. 2009& Schaller et al. 2012, Lands Ecol biblioat http://bit.ly/IALE2014 Space dominant sequenceof images Software for LUCC analysis generally implement unsupervised clustering on spatial entities based on space-dominant attributes Data mining approaches involving clustering of sequences allowed knowledge extraction to get a landscape description in terms of land-use patterns Time dominant image of sequences
  • 7. IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 8 temporal segmentation Linear Ergodic* spatial segmentation (andtransition analysis) *all states are inter connected Markov chain land use of a given field in a year depends only on the land-use of the recent previous years in the same field. Markov random field land use of a given field depends only on the land-use of the neighboring fields probably the 1stsoftware in the agronomic area implementing a time-dominant model and processing time-space data. It relies on a stochastic principle to model time space landscape regularities on 2 Markovianassumptions free download: http://www.loria.fr/~jfmari/App Methods #2 | ArpentAge French acronym for: Landscape Regularities Analysis: Environment, Territory, Agronomy Arpenteris a French verb meaning to survey
  • 8. Methods #3 | Approximating a MRF by a HMM IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 9 the Hilbert-Peanofractalcurve isusedto approximatethe MarkovRamdomField (MRF) assumptionthrougha HiddenMarkovModel (HMM) a space filling curve allows to approximate the 2D as a simple chain Lazrak2012, PhD thesis biblioat http://bit.ly/IALE2014
  • 9. Methods#4 | hierarchicalmodel IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 10 HierarchicalHMM isstrictlyergodicto segment the landscapeintopatches of homogeneoustime sequences Each “super state” of a “super model” is a HMM (generally linear) to describe the (time) sequences Twostochasticprocessescan be represented, the first (hidden) driving the second(knwonand visible) HMM= Hidden Markov Model Combiningheterogeneousdata to deal with drivers of management dynamics(insteadof pixels) ArpentAgeinstead of clustering because “context- wise” (cf. fractal curve) Context-wiselandscapesegmentationfocusedon management relatedvariables
  • 10. Materials#1 | studyarea: Monte Pisano IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 12 Mediterranean terraced olive grove farming system (62 km2)
  • 11. Materials#2 | input data IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 13 Markov random field approximated to a hidden Markov model using a space-filling curve Layers were sampled on a 10m regular point grid Geology 5 cl. • anthropic • alluvial & sand-loam sediments • quartzes • limestone • schist Orientation 4 cl. N, S, E, W Morphology 4 cl. • Plains • valleys • slopes • ridges Land cover 14 cl. • Urban • garden • cultivated olive groves • abandoned olive groves • vineyards • orchards • arable lands • fallows • garigues• outcrops • wetland vegetation • water • pine wood • wood Terracetype 5 cl. (bench) terraces • talwegs• pocket terraces • broad field terraces • extensive Dry-stonewalldensity 6 cl. From 0to 44.5 m/ha (natural breaks)
  • 12. Results#1 | an output map IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 15 terraces talwegs extensive West exposedterraces periurban warmwoods coldwoods terracedgroves foothills hectares
  • 13. Results#2 | variablesegmentation IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 16 Three majorsmanagement regions: • Terracedgrovesmedium-high densityDSW on quartz, E-S orientedwith some gariguesand pine woods • Woodsmaydifferfor morphologyor exposition • Foothillsmaybe segmentedfor specificterracetypes, mix with urbanlandcover or plainmorphology The increasing segmentation allows to define a hierarchy of the variables Especially relevant for management issues periurban periurban
  • 14. Results#3 | location of abandonedolive groves IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 17 Eastern side prevalently associated to sand-loam sediment area, with low density terraced in valleys. A C B A B C Western side prevalently associated to the cluster grouping the foothills, with the prevalence of the anthropic bedrock and S-W exposition West exposedterraces periurban terracedgroves foothills
  • 15. Conclusionsand perspectives IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 18 Flexibilityof variables treated remote sensing map, census data, etc. Flexibilityof scale of analysis potentially no limit if input data are defined coherently to the research question variable choicee.g., what if we introduce proximity to road? input variable classificationtype and number of classes variable input qualitydifferent geometric scales HHMM parameterizationspacefillingcurve, numberof states Future applications could address the temporospatialcharacterization of agricultural practicesat the watershed scale Leverages… …and potentials
  • 16. Participate! 9th IALE World Congress July 5-10, 2015 Portland, Oregon Landscape agronomy: advances and challenges of a new field addressing the management of rural land systems read more at http://bit.ly/IALE2015_Symposium_LA RIZZO Davide, FERGUSON Rafter Sass, BENOIT Marc, PADOA-SCHIOPPA Emilio contact & info ridavide@gmail.com IALE-Europe Thematic Workshop 4th July 2014 Agricultural landscape segmentation • Rizzo et al. • Symposium 1 19