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UNIVERSITY OF HORTICULTURAL
SCIENCES, BAGALKOT
College of horticulture, Bengaluru
Introduction to Plant Biotechnology PBT
202(1+1)
BOX SIZE
Topic: Electroporation and
Sonification
Electroporation
Electroporation is aa echnique in which an electrical field is
applied to cells in order to increase the permeability of the cell
membrane, allowing chemicals, drugs, electrode arrays or
DNA to be introduced into the cell
Nucleic acids do not enter cells under their own
power; they require assistance in crossing
physical barriers at the cell boundary and in
reaching an intracellular site where they can be
expressed and/or replicated.
Exposure of many types of cells to an electrical
discharge reversibly destabilizes their membranes
and transiently induces the formation of aqueous
pathways or membrane pores.
Mechanism of
Electroporation
Because the changes in membrane structure that
accompany electroporation cannot be visualized in
real time by microscopy, our understanding of the
mechanism is based on evidence that is both
substantial and circumstantial.
Electroporation is based on a simple process. Host cells and
selected molecules are suspended in a conductive solution,
and an electrical circuit is closed around the mixture. An
electrical pulse at an optimized voltage and only lasting a
few microseconds to a millisecond is discharged through the
cell suspension.
Advantages of
electroporation
Improved safety
Flexibility for easier optimization.
Scalability
Host cell versatility.
Decreased development cost and time.
Disadvantages of
electroporation
 The major drawback of electroporation is substantial cell
death caused by high voltage pulses .
 only partially successful membrane repair, requiring the
use of greater quantities of cells compared to chemical
transfection methods.
For cold clouds, there are two approaches in cloud seeding viz., static approach and dynamic approach.For
cold clouds, there are two approaches in cloud seeding viz., static approach and dynamic approach.
In static approach, it is assumed that deficiency of ice For cold clouds, there are two approaches in cloud
seeding viz., static approach and dynamic approach.
In static approach, it is assumed that deficiency of ice crystals as the reason for non-precipitation. So dry ice or
silver iodide is applied at one nuclei for a litre of cloud air.
In dynamic approach, massive quantities of silver iodide or ice crystals of 100 to 1000 nuclei for a litre of cloud
air are applied . as the reason for non-precipitation. So dry ice or silver iodide is applied at one nuclei for a litre
of cloud air.
In dynamic approach, massive quantities of silver iodide or ice crystals of 100 to 1000 nuclei for a litre of cloud
air are applied .
In static approach, it is assumed that deficiency of ice crystals as the reason for non-precipitation. So dry ice or
silver iodide is applied at one nuclei for a litre of cloud air.
In dynamic approach, massive quantities of silver iodide or ice crystals of 100 to 1000 nuclei for a litre of cloud
air are applied .
Biorad gene pulser
Cuvette
Sonication
Sonication
Sonication is the act of applying sound energy to agitate
particles in a sample, for various purposes such as the
extraction of multiple compounds from plants, microalgae
and seaweeds.
Ultrasonic frequencies (> 20 kHz) are usually used,
leading to the process also being known as
ultrasonication or ultra-sonication.
Sonicator
The equipment used for sonication is known as a sonicator.
The following are the three parts of the sonicator:
• A generator
• A transducer
• A probe
Generator
A generator is used for transforming the input electrical power
into an electrical signal that drives the Transducer
Transducer
The transducer is used for converting the electrical signal into
vibration. This vibration is used in the probe tip by amplifying
it into a longitudinal vibration causing a cavity in the sample.
The ultrasound energy is the creation of cavitation which
causes the disruption of the sample and makes it easy to break
down the particles into smaller ones.
Probe sonicator
Sonicator microtip probes
Mechanism of sonication
The sonication process uses ultrasonic sound waves. During
the process, there is a production of thousands of microscopic
vacuum bubbles in the solution due to applied pressure. The
formed bubbles collapse into the solution during the process of
cavitation.
The collapsing of bubbles takes place in the cavitation field
leading to the generation of enormous energy as there is a
production of waves.
As there is a reduction in the molecular interactions, the
particles start to separate and allow the mixing process to
take place.
There is a release of energy from the sound waves that
result in friction in the solution. Ice cubes are used during
and after the sonication process to prevent the sample
from heating up.
Sonication Methods
There are two sonication methods and they are:
Direct sonication method
Indirect sonication method
Direct Sonication
In the direct sonication method, the probe is directly inserted
into the sample, and it is the most common method of
sonication. In this method, the energy is transmitted from the
probe to the sample directly. This is a high-intensity process
and therefore, the processing of the sample takes place
quickly. The determination of the volume of the liquid for
processing is done by studying the diameter of the probe’s
tip. These tips are either replaceable or solid tips made from
titanium.
The smaller the diameter of the tip, the higher is the intensity
of sonication and the energy is confined to smaller areas. As
the diameter of the tip increases, the processing volume
becomes larger, however, the intensity becomes lower. The
output of the large-diameter probes can be increased by
using boosters and high gain horns.
Indirect sonication
In the indirect sonication method, the contact between the
probe and the sample is eliminated. This method is also
known as the high-intensity ultrasonic bath. The ultrasonic
energy is transmitted from the horn to different tubes of the
sample through the water. This method is preferred when the
volume of the sample is low as it reduces the foaming and
loss of the sample.
The indirect sonication method finds application in pathogenic
or sterile samples as this method prevents the contamination
of the samples. The cup horn and the microplate horn are the
two indirect sonicators that are considered ideal for
throughput applications.
Uses of sonication
• The sonication mechanism is used in ultrasonic cleaning which
includes cleaning of particles that adhere to the surfaces.
• It is used in laboratories for cleaning fragile objects such as
spectacles and jewellery.
• The artificial ageing of liquors and other alcoholic beverages is
done by the process of sonication.
• Other applications of sonication in food industries include
dispersions of emulgators and speeding the filtration process.
• Different parts of the soil are studied with the help of sonication.
Thank you
Submitted by:
Prakruthi B S
UHS20UG5255
2 BSc 2 sem
College of Horticulture,
Bengaluru
Submitted to
Dr Halesh G K
Assistant professor
College of Horticulture,
Bengaluru

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agr ppt-1.pptx

  • 1. UNIVERSITY OF HORTICULTURAL SCIENCES, BAGALKOT College of horticulture, Bengaluru Introduction to Plant Biotechnology PBT 202(1+1) BOX SIZE
  • 3. Electroporation Electroporation is aa echnique in which an electrical field is applied to cells in order to increase the permeability of the cell membrane, allowing chemicals, drugs, electrode arrays or DNA to be introduced into the cell
  • 4. Nucleic acids do not enter cells under their own power; they require assistance in crossing physical barriers at the cell boundary and in reaching an intracellular site where they can be expressed and/or replicated. Exposure of many types of cells to an electrical discharge reversibly destabilizes their membranes and transiently induces the formation of aqueous pathways or membrane pores.
  • 5. Mechanism of Electroporation Because the changes in membrane structure that accompany electroporation cannot be visualized in real time by microscopy, our understanding of the mechanism is based on evidence that is both substantial and circumstantial.
  • 6. Electroporation is based on a simple process. Host cells and selected molecules are suspended in a conductive solution, and an electrical circuit is closed around the mixture. An electrical pulse at an optimized voltage and only lasting a few microseconds to a millisecond is discharged through the cell suspension.
  • 7.
  • 8. Advantages of electroporation Improved safety Flexibility for easier optimization. Scalability Host cell versatility. Decreased development cost and time.
  • 9. Disadvantages of electroporation  The major drawback of electroporation is substantial cell death caused by high voltage pulses .  only partially successful membrane repair, requiring the use of greater quantities of cells compared to chemical transfection methods.
  • 10. For cold clouds, there are two approaches in cloud seeding viz., static approach and dynamic approach.For cold clouds, there are two approaches in cloud seeding viz., static approach and dynamic approach. In static approach, it is assumed that deficiency of ice For cold clouds, there are two approaches in cloud seeding viz., static approach and dynamic approach. In static approach, it is assumed that deficiency of ice crystals as the reason for non-precipitation. So dry ice or silver iodide is applied at one nuclei for a litre of cloud air. In dynamic approach, massive quantities of silver iodide or ice crystals of 100 to 1000 nuclei for a litre of cloud air are applied . as the reason for non-precipitation. So dry ice or silver iodide is applied at one nuclei for a litre of cloud air. In dynamic approach, massive quantities of silver iodide or ice crystals of 100 to 1000 nuclei for a litre of cloud air are applied . In static approach, it is assumed that deficiency of ice crystals as the reason for non-precipitation. So dry ice or silver iodide is applied at one nuclei for a litre of cloud air. In dynamic approach, massive quantities of silver iodide or ice crystals of 100 to 1000 nuclei for a litre of cloud air are applied . Biorad gene pulser
  • 12.
  • 14. Sonication Sonication is the act of applying sound energy to agitate particles in a sample, for various purposes such as the extraction of multiple compounds from plants, microalgae and seaweeds. Ultrasonic frequencies (> 20 kHz) are usually used, leading to the process also being known as ultrasonication or ultra-sonication.
  • 15. Sonicator The equipment used for sonication is known as a sonicator. The following are the three parts of the sonicator: • A generator • A transducer • A probe
  • 16. Generator A generator is used for transforming the input electrical power into an electrical signal that drives the Transducer Transducer The transducer is used for converting the electrical signal into vibration. This vibration is used in the probe tip by amplifying it into a longitudinal vibration causing a cavity in the sample. The ultrasound energy is the creation of cavitation which causes the disruption of the sample and makes it easy to break down the particles into smaller ones.
  • 19. Mechanism of sonication The sonication process uses ultrasonic sound waves. During the process, there is a production of thousands of microscopic vacuum bubbles in the solution due to applied pressure. The formed bubbles collapse into the solution during the process of cavitation. The collapsing of bubbles takes place in the cavitation field leading to the generation of enormous energy as there is a production of waves.
  • 20. As there is a reduction in the molecular interactions, the particles start to separate and allow the mixing process to take place. There is a release of energy from the sound waves that result in friction in the solution. Ice cubes are used during and after the sonication process to prevent the sample from heating up.
  • 21. Sonication Methods There are two sonication methods and they are: Direct sonication method Indirect sonication method
  • 23. In the direct sonication method, the probe is directly inserted into the sample, and it is the most common method of sonication. In this method, the energy is transmitted from the probe to the sample directly. This is a high-intensity process and therefore, the processing of the sample takes place quickly. The determination of the volume of the liquid for processing is done by studying the diameter of the probe’s tip. These tips are either replaceable or solid tips made from titanium. The smaller the diameter of the tip, the higher is the intensity of sonication and the energy is confined to smaller areas. As the diameter of the tip increases, the processing volume becomes larger, however, the intensity becomes lower. The output of the large-diameter probes can be increased by using boosters and high gain horns.
  • 25. In the indirect sonication method, the contact between the probe and the sample is eliminated. This method is also known as the high-intensity ultrasonic bath. The ultrasonic energy is transmitted from the horn to different tubes of the sample through the water. This method is preferred when the volume of the sample is low as it reduces the foaming and loss of the sample. The indirect sonication method finds application in pathogenic or sterile samples as this method prevents the contamination of the samples. The cup horn and the microplate horn are the two indirect sonicators that are considered ideal for throughput applications.
  • 26. Uses of sonication • The sonication mechanism is used in ultrasonic cleaning which includes cleaning of particles that adhere to the surfaces. • It is used in laboratories for cleaning fragile objects such as spectacles and jewellery. • The artificial ageing of liquors and other alcoholic beverages is done by the process of sonication. • Other applications of sonication in food industries include dispersions of emulgators and speeding the filtration process. • Different parts of the soil are studied with the help of sonication.
  • 28. Submitted by: Prakruthi B S UHS20UG5255 2 BSc 2 sem College of Horticulture, Bengaluru Submitted to Dr Halesh G K Assistant professor College of Horticulture, Bengaluru