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Chapter 1
Pathogenesis
Section A
Intended Learning Outcomes
• Differentiate parasitism and pathogenicity
• State sequential events in disease
development
• Parasite: An organism that lives on and derives food from an
other organism
• Parasitism: The relationship between a parasite and its host is
parasitism
• Pathogen: An agent that can incite a disease.
• Pathogenicity is the ability of the pathogen to cause disease
Most successful pathogens
• fungi,
• bacteria,
• mollicutes,
• parasitic higher plants,
• nematodes,
• protozoa,
• viruses and
• viroids
Are all pathogens parasite ?
• A parasite is not necessarily a
pathogen and a pathogen is not
necessarily a parasite
But why ?
• Symbiosis such as mycorrhizae or root nodule
bacteria.
• Biotrophs/obligate Parasites
Non-obligate
◦ Facultative saprophytes/hemibiotrophs
/semibiotrophs
◦ Facultative parasite/necrotrophs
Characteristics of Necrotrophs
Biochemical and morphological
features:
 Host cell rapidly killed
 Toxins and cytolytic enzyme produced
 No special parasitic structures formed
 Host penetration via wounds or natural
openings
Ecological features
• Wide host range
• Able to grow saprophytically away from the host
• Attack juvenile, debilitated or senescing tissues
Characteristics of Necrotrophs
Biochemical and morphological features:
• Host cells not rapidly killed
• Few or no toxins or cytolytic enzymes
produced
• Special parasitic structures eg, haustoria are
formed
• Host penetration direct or via natural openings
Characteristics of Biotrophs
Ecological features
• Narrow host range
• Unable to grow away from the host
• Attack healthy hosts at all stages of
development
Characteristics of Biotrophs
Pathogenesis/Disease cycle
The chain of events involved in disease
development, including the stages of
development of the pathogen and the effect of
disease on the host is called disease cycle or
pathogenesis
Stages in the development of disease
Inoculation
Pre-penetration Phenomena
Penetration
Infection
Invasion
Growth and Reproduction of the Pathogen
Dissemination of the Pathogen
Over-wintering/over-summering of the Pathogen
Inoculation
• Inoculation
• Inoculum
• Propagule
Fungus
Bacteria,
mollicutes,
protozoa, viruses
and viroids.
Which are Inocula?
Nematodes
Phanerogamic
parasites
Which are Inocula?
Types of Inoculum
• Primary inoculum and primary infection
• Secondary inoculum and secondary infection
Sources of inoculum
• Inside courses
• Outside sources
Arrival or landing of inoculum on host
• Most is carried by wind, water, insects
• Only a small number actually lands on
susceptible plants
• Vector
Prepenetration Phenomena
Attachment of Pathogens to Host
• Viruses, mollicutes, fastidious bacteria, and
protozoa
• Almost all fungi, bacteria and parasitic plants
Attachment of Pathogens to Host
 The propagules have mucilaginous
The germ tubes also produce these
substances
The areas of contact appears to degrade
presumably due to enzymes
Germination of spores and seeds
–Requirements for germination
1. Favorable temperature
2. Favorable moisture in the form of rain,
dew, or a film of water
Pre-penetration Phenomena
• Germination of spores and seeds
–Spore germination is often favored by
Exudates
 Certain pathogens are only stimulated by
exudates of plants susceptible to that particular
pathogen
Pre-penetration Phenomena
Germination of spores and seeds
• Spore germination may be inhibited by
1. materials released by the plant
2. by saprophytic microflora
Pre-penetration Phenomena
Germination of spores and seeds
Antagonistic microorganisms
Fungistasis
Suppressive soils
Pre-penetration Phenomena
Prepenetration Phenomena
Pre-penetration Phenomena
Uredospores of a rust fungus next to
open stomata.
A rust uredospore that has germinated
and produced a dome-like
appressorium.
Pre-penetration Phenomena
• After spores germinate
• the resulting germ tubes must grow or
the secondary zoospores must move toward a
penetration site
• The number, length and rate of growth of germ
tubes or the number and mobility of motile
spores affected by temperature and moisture
Pre-penetration Phenomena
Prepenetration Phenomena
• Chemical stimuli associated with
wounds, stomata and lenticels also
stimulate growth
• Seeds germinate by producing a radicle
Pre-penetration Phenomena
Hatching of Nematode Eggs
• Favorable temperature and moisture
• The egg contains the first juvenile stage before or
soon after the egg is laid.
• This juvenile immediately undergoes a molt and
gives rise to the second juvenile stage, which may
remain dormant in the egg for various periods of
time.
Hatching of Nematode Eggs
• Thus, when the egg finally hatches, it is
the second-stage juvenile that emerges,
and it either finds and penetrates a host
plant or undergoes additional molts that
produce further juvenile stages and
adults.
Hatching of Nematode Eggs
• They are attracted to the root by CO2 and
some amino acids associated with root
growth
Penetration
• Pathogens penetrate plant surfaces through
natural openings or wounds or directly
• Some fungi penetrate only in one way others,
in several ways
• Bacteria enter mostly through wounds
sometimes through natural openings but never
directly
• Viruses, viroids, mollicutes fastidious bacteria
and protozoa enter through wounds by vectors
Direct penetration through intact plant
surfaces
• fungi and nematodes and parasitic plants
• Fungi use a fine hyphae
Direct penetration through intact plant
surfaces
• The penetration is through mechanical force and
softening of the cell walls by an enzyme
• Most fungi form an appressorium at the end of the
germ tube
• Then a penetration peg emerges from the flat
surface of the appressorium and pierces the
cuticle and cell wall
Direct penetration through intact plant
surfaces
• The peg grows into a fine hyphae then
reaches a normal diameter once it is
inside the cell
• Parasitic plants also penetrate the same
way
Direct penetration through intact plant
surfaces
• Nematodes penetrate its stylet
• inserts its stylet or the entire nematode enters
Penetration through wounds
• Bacteria, most fungi, some viruses, all viroids
• Viruses mollicutes, fastidious vascular
bacteria, and protozoa enter through wounds
made by vectors
• Some pathogens can be only carried by
specific vectors
Penetration through natural openings
Many fungi and bacteria enter through:
• Stomata
• Hydathodes
• Nectarthodes
• Lenticels
Penetration through stomata
• Underside of the leaf
• Bacteria swim
• Fungi can germinate on a wet surface and enter
a stomata
Hydathodes
• Open pores on the margins and tips of leaves
• Connected to veins
• Secrete droplets of liquids containing nutrients
some bacteria but few fungi enter here
• Some enter through nectarthodes which are
similar to hydathodes but on blossoms
Lenticels
• Openings on fruits, stems, tubers, filled with
loosely connected cells to allow passage of air
• Relatively few fungi and bacterial enter this
way
• A less efficient , secondary pathway
Path of Entry
• Fungi = direct, wounds, natural openings
• Bacteria = wounds, natural openings
• Nematodes = direct, natural openings
• Parasitic higher plants = direct
• Virus, viroids, mollicutes, protozoa and
fastidious bacteria =wounds
Infection
• pathogens establish contact with the host
• During infection, the pathogen grows or
multiplies, colonizes the host plant
• Infection results in the appearance of
symptoms
• Some infections remain latent and show up
when conditions are more favorable
Infection
• Symptoms may show up in 2-4 days or as long
as 2-3 years
• Incubation period
• In most plants the incubation period is from a
few days to a few weeks
Infection
• During infection some pathogens:
– Obtain nutrients without killing the cell
– Kill cells and use contents
– Kill cells and disorganize surrounding tissue
– Release enzymes, toxins, growth regulators
Invasion
The spread of the pathogen into the host
• apple scab grow between the cuticle and the
epidermis
Invasion
Powdery mildew grow on the surface and
send haustoria into epidermal cells
intercellularly
Hyphae of the smut fungus
Ustilago in an infected leaf
(intracellularly)
vascular wilts invade the xylem vessels
(Both fungus and bacteria)
Invasion
• Fungi invade intercellularly and intracellularly
and some grow into and throughout the plant
• Bacteria at first invade intercellularly and then
intracellularly
• Bacteria causing vascular wilts invade the
xylem vessels
Alfalfa shoot invaded by plant parasitic nematodes
(Ditylenchus dipsaci)
Invasion
• Most nematodes are intercellular some
intracellular and some don’t invade at all but
feed by piercing epidermal cells with their
stylets.
• Viruses, viroids, mollicutes, fastidious bacteria
and protozoa invade by moving from cell to
cell
Types of cells and tissues invaded
• Fungi, viruses and viroids invade all types of
cells
• Mollicutes, and protozoa invade phloem sieve
tubes and some parenchyma
• Most fastidious bacteria invade xylem vessels
and a few invade phloem sieve tubes
Local and Systemic invasion
• Fungi, bacteria, nematodes, viruses, and
parasitic plants : local
• Fastidious bacteria, mollicutes, and protozoa:
systemic (internal)
• Some fungi, bacteria and viruses are also
systemic
Growth and Reproduction of the Pathogen
• Fungi= spores, sexual or asexual
• Parasitic plants= seeds on branches
• Bacteria, mollicutes, protozoa = fission
• Viruses and viroids= replicate
• Nematodes = eggs
Location of reproduction
• Most fungi reproduce inside the plant but most
release spores outside
• Powdery mildew on the outside
• Viruses, viroids, mollicutes, protozoa, and
fastidious bacteria only reproduce inside
Growth and Reproduction of the Pathogen
Rate of reproduction
• Fungi: millions of spores in a season
• Bacteria divide every 20-30 minutes
• Viruses can produce 100,000 to 10 million particles
in a single cell
• Nematodes lay 300-500 eggs about half female who
do the same and so on
• 2 to 8 million, nematodes are reproduced in one
season during one season
Growth and Reproduction of the Pathogen
Dissemination
Spread of the pathogen from sources
of the pathogen to the healthy plant to
be infected
 Fungal spores and seeds
 The spores land or are washed out by rain
 Spores can be carried from several to several
hundred kilometers (high altitude)
 This can cause an epidemic over several years
 Bacteria , nematodes may be carried by wind,
water etc
Dissemination by air
Wind as a means of dispersal
Short distance dissemination
sporangia of downy mildew
fungi, conidia of powdery
mildew fungi and basidiospores
of rust fungi
Uredospores of rust fungi, Chlamydospores of smut fungi
and conidia of Alternaria, Helminthosporium and
Pyricularia,
Long Distance
Bacterial fire blight exudes
Nematodes and spores with ground debris
Windy rain
Touching plants
Dissemination by air
Bacteria, nematodes, spores, mycelium
parts in the soil
All Bacteria and many spores are exuded
in a sticky liquid
Rain drops or drops from overhead
irrigation
Dissemination by water
 Aphids, leafhoppers, whiteflies
 Leafhoppers: mollicutes, fastidious bacteria, and
protozoa
 Dutch Elm disease and bacterial wilt of cucurbits
 soft rot, anthracnose, and ergot are carried by
insects externally
Dissemination by Insects, Mites, and other
Vectors
Dissemination by Insects, Mites, and other
Vectors
•Mites and nematodes can also carry virus
pathogens internally and bacteria and fungus
externally
•Animals that walk among plants also carry
•Parasitic plants can carry as they bridge
Dissemination by Seed, Transplants,
Budwood, and Nursery Stock
•During propagation
•The grower can infect his own stock and sell
it out to garden centers, home owners etc.
•Crown gall
Dissemination by Humans
 Handling diseased stock
 Tobacco mosaic is transmitted through
cigarettes , shoes, hands
 Traveling long distances
 Tools carry pathogens from plant to plant
 Fireblight is a good example
Dissemination by Humans
• Dutch elm disease fungus
• White pine blister rust fungus
• Citrus canker bacterium
• Powdery and downy mildew fungus of
grape (Europe)

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1-07-18 Pathogenesis.pptx

  • 2. Intended Learning Outcomes • Differentiate parasitism and pathogenicity • State sequential events in disease development
  • 3. • Parasite: An organism that lives on and derives food from an other organism • Parasitism: The relationship between a parasite and its host is parasitism • Pathogen: An agent that can incite a disease. • Pathogenicity is the ability of the pathogen to cause disease
  • 4. Most successful pathogens • fungi, • bacteria, • mollicutes, • parasitic higher plants, • nematodes, • protozoa, • viruses and • viroids
  • 5. Are all pathogens parasite ? • A parasite is not necessarily a pathogen and a pathogen is not necessarily a parasite But why ?
  • 6. • Symbiosis such as mycorrhizae or root nodule bacteria.
  • 7. • Biotrophs/obligate Parasites Non-obligate ◦ Facultative saprophytes/hemibiotrophs /semibiotrophs ◦ Facultative parasite/necrotrophs
  • 8.
  • 9.
  • 10. Characteristics of Necrotrophs Biochemical and morphological features:  Host cell rapidly killed  Toxins and cytolytic enzyme produced  No special parasitic structures formed  Host penetration via wounds or natural openings
  • 11. Ecological features • Wide host range • Able to grow saprophytically away from the host • Attack juvenile, debilitated or senescing tissues Characteristics of Necrotrophs
  • 12. Biochemical and morphological features: • Host cells not rapidly killed • Few or no toxins or cytolytic enzymes produced • Special parasitic structures eg, haustoria are formed • Host penetration direct or via natural openings Characteristics of Biotrophs
  • 13. Ecological features • Narrow host range • Unable to grow away from the host • Attack healthy hosts at all stages of development Characteristics of Biotrophs
  • 14. Pathogenesis/Disease cycle The chain of events involved in disease development, including the stages of development of the pathogen and the effect of disease on the host is called disease cycle or pathogenesis
  • 15.
  • 16. Stages in the development of disease Inoculation Pre-penetration Phenomena Penetration Infection Invasion Growth and Reproduction of the Pathogen Dissemination of the Pathogen Over-wintering/over-summering of the Pathogen
  • 20. Types of Inoculum • Primary inoculum and primary infection • Secondary inoculum and secondary infection
  • 21. Sources of inoculum • Inside courses • Outside sources
  • 22. Arrival or landing of inoculum on host • Most is carried by wind, water, insects • Only a small number actually lands on susceptible plants • Vector
  • 24. Attachment of Pathogens to Host • Viruses, mollicutes, fastidious bacteria, and protozoa • Almost all fungi, bacteria and parasitic plants
  • 25. Attachment of Pathogens to Host  The propagules have mucilaginous The germ tubes also produce these substances The areas of contact appears to degrade presumably due to enzymes
  • 26. Germination of spores and seeds –Requirements for germination 1. Favorable temperature 2. Favorable moisture in the form of rain, dew, or a film of water
  • 27. Pre-penetration Phenomena • Germination of spores and seeds –Spore germination is often favored by Exudates  Certain pathogens are only stimulated by exudates of plants susceptible to that particular pathogen
  • 28. Pre-penetration Phenomena Germination of spores and seeds • Spore germination may be inhibited by 1. materials released by the plant 2. by saprophytic microflora
  • 29. Pre-penetration Phenomena Germination of spores and seeds Antagonistic microorganisms Fungistasis Suppressive soils Pre-penetration Phenomena
  • 30. Prepenetration Phenomena Pre-penetration Phenomena Uredospores of a rust fungus next to open stomata. A rust uredospore that has germinated and produced a dome-like appressorium.
  • 31. Pre-penetration Phenomena • After spores germinate • the resulting germ tubes must grow or the secondary zoospores must move toward a penetration site • The number, length and rate of growth of germ tubes or the number and mobility of motile spores affected by temperature and moisture Pre-penetration Phenomena
  • 32. Prepenetration Phenomena • Chemical stimuli associated with wounds, stomata and lenticels also stimulate growth • Seeds germinate by producing a radicle Pre-penetration Phenomena
  • 33. Hatching of Nematode Eggs • Favorable temperature and moisture • The egg contains the first juvenile stage before or soon after the egg is laid. • This juvenile immediately undergoes a molt and gives rise to the second juvenile stage, which may remain dormant in the egg for various periods of time.
  • 34. Hatching of Nematode Eggs • Thus, when the egg finally hatches, it is the second-stage juvenile that emerges, and it either finds and penetrates a host plant or undergoes additional molts that produce further juvenile stages and adults.
  • 35. Hatching of Nematode Eggs • They are attracted to the root by CO2 and some amino acids associated with root growth
  • 36. Penetration • Pathogens penetrate plant surfaces through natural openings or wounds or directly • Some fungi penetrate only in one way others, in several ways • Bacteria enter mostly through wounds sometimes through natural openings but never directly • Viruses, viroids, mollicutes fastidious bacteria and protozoa enter through wounds by vectors
  • 37.
  • 38.
  • 39. Direct penetration through intact plant surfaces • fungi and nematodes and parasitic plants • Fungi use a fine hyphae
  • 40. Direct penetration through intact plant surfaces • The penetration is through mechanical force and softening of the cell walls by an enzyme • Most fungi form an appressorium at the end of the germ tube • Then a penetration peg emerges from the flat surface of the appressorium and pierces the cuticle and cell wall
  • 41. Direct penetration through intact plant surfaces • The peg grows into a fine hyphae then reaches a normal diameter once it is inside the cell • Parasitic plants also penetrate the same way
  • 42. Direct penetration through intact plant surfaces • Nematodes penetrate its stylet • inserts its stylet or the entire nematode enters
  • 43. Penetration through wounds • Bacteria, most fungi, some viruses, all viroids • Viruses mollicutes, fastidious vascular bacteria, and protozoa enter through wounds made by vectors • Some pathogens can be only carried by specific vectors
  • 44. Penetration through natural openings Many fungi and bacteria enter through: • Stomata • Hydathodes • Nectarthodes • Lenticels
  • 45.
  • 46. Penetration through stomata • Underside of the leaf • Bacteria swim • Fungi can germinate on a wet surface and enter a stomata
  • 47. Hydathodes • Open pores on the margins and tips of leaves • Connected to veins • Secrete droplets of liquids containing nutrients some bacteria but few fungi enter here • Some enter through nectarthodes which are similar to hydathodes but on blossoms
  • 48. Lenticels • Openings on fruits, stems, tubers, filled with loosely connected cells to allow passage of air • Relatively few fungi and bacterial enter this way • A less efficient , secondary pathway
  • 49. Path of Entry • Fungi = direct, wounds, natural openings • Bacteria = wounds, natural openings • Nematodes = direct, natural openings • Parasitic higher plants = direct • Virus, viroids, mollicutes, protozoa and fastidious bacteria =wounds
  • 50. Infection • pathogens establish contact with the host • During infection, the pathogen grows or multiplies, colonizes the host plant • Infection results in the appearance of symptoms • Some infections remain latent and show up when conditions are more favorable
  • 51. Infection • Symptoms may show up in 2-4 days or as long as 2-3 years • Incubation period • In most plants the incubation period is from a few days to a few weeks
  • 52. Infection • During infection some pathogens: – Obtain nutrients without killing the cell – Kill cells and use contents – Kill cells and disorganize surrounding tissue – Release enzymes, toxins, growth regulators
  • 53. Invasion The spread of the pathogen into the host • apple scab grow between the cuticle and the epidermis
  • 54. Invasion Powdery mildew grow on the surface and send haustoria into epidermal cells
  • 55. intercellularly Hyphae of the smut fungus Ustilago in an infected leaf (intracellularly) vascular wilts invade the xylem vessels (Both fungus and bacteria)
  • 56. Invasion • Fungi invade intercellularly and intracellularly and some grow into and throughout the plant • Bacteria at first invade intercellularly and then intracellularly • Bacteria causing vascular wilts invade the xylem vessels
  • 57. Alfalfa shoot invaded by plant parasitic nematodes (Ditylenchus dipsaci)
  • 58. Invasion • Most nematodes are intercellular some intracellular and some don’t invade at all but feed by piercing epidermal cells with their stylets. • Viruses, viroids, mollicutes, fastidious bacteria and protozoa invade by moving from cell to cell
  • 59. Types of cells and tissues invaded • Fungi, viruses and viroids invade all types of cells • Mollicutes, and protozoa invade phloem sieve tubes and some parenchyma • Most fastidious bacteria invade xylem vessels and a few invade phloem sieve tubes
  • 60. Local and Systemic invasion • Fungi, bacteria, nematodes, viruses, and parasitic plants : local • Fastidious bacteria, mollicutes, and protozoa: systemic (internal) • Some fungi, bacteria and viruses are also systemic
  • 61. Growth and Reproduction of the Pathogen • Fungi= spores, sexual or asexual • Parasitic plants= seeds on branches • Bacteria, mollicutes, protozoa = fission • Viruses and viroids= replicate • Nematodes = eggs
  • 62. Location of reproduction • Most fungi reproduce inside the plant but most release spores outside • Powdery mildew on the outside • Viruses, viroids, mollicutes, protozoa, and fastidious bacteria only reproduce inside Growth and Reproduction of the Pathogen
  • 63.
  • 64. Rate of reproduction • Fungi: millions of spores in a season • Bacteria divide every 20-30 minutes • Viruses can produce 100,000 to 10 million particles in a single cell • Nematodes lay 300-500 eggs about half female who do the same and so on • 2 to 8 million, nematodes are reproduced in one season during one season Growth and Reproduction of the Pathogen
  • 65.
  • 66. Dissemination Spread of the pathogen from sources of the pathogen to the healthy plant to be infected
  • 67.  Fungal spores and seeds  The spores land or are washed out by rain  Spores can be carried from several to several hundred kilometers (high altitude)  This can cause an epidemic over several years  Bacteria , nematodes may be carried by wind, water etc Dissemination by air
  • 68. Wind as a means of dispersal Short distance dissemination sporangia of downy mildew fungi, conidia of powdery mildew fungi and basidiospores of rust fungi Uredospores of rust fungi, Chlamydospores of smut fungi and conidia of Alternaria, Helminthosporium and Pyricularia, Long Distance
  • 69. Bacterial fire blight exudes Nematodes and spores with ground debris Windy rain Touching plants Dissemination by air
  • 70. Bacteria, nematodes, spores, mycelium parts in the soil All Bacteria and many spores are exuded in a sticky liquid Rain drops or drops from overhead irrigation Dissemination by water
  • 71.  Aphids, leafhoppers, whiteflies  Leafhoppers: mollicutes, fastidious bacteria, and protozoa  Dutch Elm disease and bacterial wilt of cucurbits  soft rot, anthracnose, and ergot are carried by insects externally Dissemination by Insects, Mites, and other Vectors
  • 72. Dissemination by Insects, Mites, and other Vectors •Mites and nematodes can also carry virus pathogens internally and bacteria and fungus externally •Animals that walk among plants also carry •Parasitic plants can carry as they bridge
  • 73. Dissemination by Seed, Transplants, Budwood, and Nursery Stock •During propagation •The grower can infect his own stock and sell it out to garden centers, home owners etc. •Crown gall
  • 74. Dissemination by Humans  Handling diseased stock  Tobacco mosaic is transmitted through cigarettes , shoes, hands  Traveling long distances  Tools carry pathogens from plant to plant  Fireblight is a good example
  • 75. Dissemination by Humans • Dutch elm disease fungus • White pine blister rust fungus • Citrus canker bacterium • Powdery and downy mildew fungus of grape (Europe)