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Characterization of the Bacteriophage  Φ 29 Nanomotor May 1, 2009 Pearl C. Pfiester
Outline ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Purpose ,[object Object],[object Object],[object Object]
Figure 1.   (Guo, Erickson, & Anderson, 1987)  (A)   Restriction maps of the left end of phi29 for restriction enzymes.  (B)   Restriction fragment designations of  (C).   (D)  Autoradiograph of a Southern blot of fragments in  (C)  after hybridization with [32P]RNA probe that was purified from prohead. Discovering pRNA ,[object Object],[object Object]
Overview pRNA ? gp 16 gp 3
Number of Copies ,[object Object],[object Object]
Number of Copies ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Figure 2.   (Shu, Zhang, Jin, & Guo, 2007).  Experimental set up for single-molecule imaging.  (A)  pRNA labeled with fluorescent label.  (B)  Experimental design for before initiation of DNA translocation and during translocation  (C).
Number of Copies ,[object Object],[object Object],[object Object],[object Object],[object Object],Figure 3.   (Shu, Zhang, Jin, & Guo, 2007).  Dual-view imaging of procapsid/pRNA complexes containing dimers labeled Cy3 pRNA I and Cy5 pRNA II.  (A)  Dimer with both labels.  (B)  Fluorescence image of procapsids dual-labeled dimers.  (C)  Comparison of empirical and predicted distribution of photobleaching steps of Cy3 pRNA I.  (D)  Florescence intensity versus time to show photobleaching steps which shows each procapsid/pRNA complex had three Cy3 pRNA I and three Cy5 pRNA II.
Number of Copies Confirmed ,[object Object],[object Object],Figure 4.   (Shu, Zhang, Jin, & Guo, 2007).  Negatively stained EM images of pRNA conjugated with ferritin.
Structure of pRNA ,[object Object],Figure 5.   (Chen, Sheng, Shao, & Guo, 2000).  (I)  Wild type of pRNA.  (II)  One of the circularly permutated pRNA or cpRNA of the right and left hand loops.  (III)  Hexameric pRNA formed by hand-in-hand interaction between loops from pRNA pairs.
Do pRNA pairs form dimers or trimers? ,[object Object],[object Object],Figure 6.   (Chen, Sheng, Shao, & Guo, 2000).  (A)  Polyacrylamide gel showing monomers (M), dimers (D) and trimers (T) in lanes 1-10.  Lanes 9 and 10 showed isolation of dimers and trimers and then subjected to 10% denaturing gels in lanes 11-13.  (B)  Purified dimers and trimers were compared after gradient sedimentation.
[object Object],Figure 7.   (Chen, Sheng, Shao, & Guo, 2000).  Cyro-AFM images of pRNA dimers, monomers, and trimers.
[object Object],[object Object],[object Object],[object Object],Figure 8.   (Chen, Sheng, Shao, & Guo, 2000).  Packaging activities of pRNA dimers.
Summary ,[object Object],[object Object],[object Object],[object Object],[object Object]
Proposed Models ,[object Object],[object Object],[object Object],[object Object],[object Object],See Movie: http://bilbo.bio.purdue.edu/~viruswww/Rossmann_home/movies/phi29rot.php
Proposed Models ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Nanomotor Innovation ,[object Object],[object Object],[object Object],[object Object],[object Object]
Literature Cited Chen C., Sheng S., Shao Z., & Guo P.  (2000).  A dimer as a building block in assembling RNA.  Journal of Biological Chemistry .  23:  17510-17516.  Guo P., Erickson S., & Anderson D.  (1987).  A small viral RNA is required for in vitro packaging of bacteriophage φ29 DNA.  236(4802):  690-694.  Guo P. & Lee T. (2007). Viral nanomotors for packaging of dsDNA and dsRNA.  Molecular Microbiology .  64(4):  886-903.  Review Article. Shu D., Zhang H., Jin J., & Guo P.  (2007).  Counting of six pRNAs of phi29 DNA-packaging motor with customized single-molecule dual-view system.  EMBO Journal .  26:  527-537.
Summary ,[object Object],[object Object],[object Object],[object Object],[object Object]

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Characterization of the phi29 Bacteriophage Nanomotor

  • 1. Characterization of the Bacteriophage Φ 29 Nanomotor May 1, 2009 Pearl C. Pfiester
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  • 18. Literature Cited Chen C., Sheng S., Shao Z., & Guo P. (2000). A dimer as a building block in assembling RNA. Journal of Biological Chemistry . 23: 17510-17516. Guo P., Erickson S., & Anderson D. (1987). A small viral RNA is required for in vitro packaging of bacteriophage φ29 DNA. 236(4802): 690-694. Guo P. & Lee T. (2007). Viral nanomotors for packaging of dsDNA and dsRNA. Molecular Microbiology . 64(4): 886-903. Review Article. Shu D., Zhang H., Jin J., & Guo P. (2007). Counting of six pRNAs of phi29 DNA-packaging motor with customized single-molecule dual-view system. EMBO Journal . 26: 527-537.
  • 19.

Editor's Notes

  1. I would like to thank Dr. Visalli for mentoring me throughout this project. Today I’m going to discuss the Characterization of the bacteriophage phi29 nanomotor.