SlideShare a Scribd company logo

Protein networks: A basis for large-scale data mining

•Download as PPT, PDF•
•
Lars Juhl Jensen
Lars Juhl Jensen

MiTiN Consortium Meeting, Institute for Research in Biomedicine, Barcelona, Spain, March 9, 2010.

Technology
1 of 58
Protein networks A basis for large-scale data mining Lars Juhl Jensen
 
 
 
 
Phase 1 association networks
who?
 
Frishman et al., Modern Genome Annotation , 2009
STRING
computational predictions
Korbel et al., Nature Biotechnology , 2004
experimental data
Jensen & Bork, Science , 2008
curated knowledge
Letunic & Bork, Trends in Biochemical Sciences , 2008
literature mining
 
confidence scores
cross-species transfer
Phase 2 signaling networks
what?
phosphoproteomics
 
signaling events
NetPhorest
automation
Miller, Jensen et al., Science Signaling , 2008
specificity atlas
 
NetworKIN
Linding, Jensen, Ostheimer et al., Cell , 2007
benchmarking
Linding, Jensen, Ostheimer et al., Cell , 2007
context is crucial
Phase 3 dynamic networks
when?
cell-cycle regulation
 
microarray time courses
Gauthier et al., Nucleic Acids Research , 2007
protein interactions
temporal network
de Lichtenberg, Jensen et al., Science , 2005
de Lichtenberg, Jensen et al., Science , 2005
just-in-time assembly
de Lichtenberg, Jensen et al., Cell Cycle , 2007
evolutionary flexibility
individual genes
Jensen, Jensen, de Lichtenberg et al., Nature , 2006
summary
networks
data integration
specific predictions
systems properties
 
Acknowledgments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
larsjuhljensen

Recommended

Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text miningLars Juhl Jensen
 
Systems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningSystems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningLars Juhl Jensen
 
Protein–protein interaction networks
Protein–protein interaction networksProtein–protein interaction networks
Protein–protein interaction networksLars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text miningLars Juhl Jensen
 
From phosphoproteomics to signaling networks
From phosphoproteomics to signaling networksFrom phosphoproteomics to signaling networks
From phosphoproteomics to signaling networksLars Juhl Jensen
 

Recommended

Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text miningLars Juhl Jensen
 
Systems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningSystems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningLars Juhl Jensen
 
Protein–protein interaction networks
Protein–protein interaction networksProtein–protein interaction networks
Protein–protein interaction networksLars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text miningLars Juhl Jensen
 
From phosphoproteomics to signaling networks
From phosphoproteomics to signaling networksFrom phosphoproteomics to signaling networks
From phosphoproteomics to signaling networksLars Juhl Jensen
 
From neuronal information flow to connectomics
From neuronal information flow to connectomicsFrom neuronal information flow to connectomics
From neuronal information flow to connectomicsmasanori shimono
 
Mining and communicating biomedical knowledge
Mining and communicating biomedical knowledgeMining and communicating biomedical knowledge
Mining and communicating biomedical knowledgeLars Juhl Jensen
 
Unraveling signaling networks by data integration
Unraveling signaling networks by data integrationUnraveling signaling networks by data integration
Unraveling signaling networks by data integrationLars Juhl Jensen
 
Mining heaps of data and piles of papers
Mining heaps of data and piles of papersMining heaps of data and piles of papers
Mining heaps of data and piles of papersLars Juhl Jensen
 
Recent Pubs/Presentations
Recent Pubs/PresentationsRecent Pubs/Presentations
Recent Pubs/Presentationsgbtait
 
Organic Electronics
Organic ElectronicsOrganic Electronics
Organic ElectronicsVedant Makwana
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationLars Juhl Jensen
 
Dr. ghous narejo
Dr. ghous narejoDr. ghous narejo
Dr. ghous narejoDr Ghous B Narejo
 
Network biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data miningNetwork biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data miningLars Juhl Jensen
 
Effects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment PaperEffects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment PaperKenko95
 
Retrieve Relevant Results with Reaxys
Retrieve Relevant Results with ReaxysRetrieve Relevant Results with Reaxys
Retrieve Relevant Results with ReaxysReaxys
 
Data integration and functional association networks
Data integration and functional association networksData integration and functional association networks
Data integration and functional association networksLars Juhl Jensen
 
Disease Systems Biology
Disease Systems BiologyDisease Systems Biology
Disease Systems BiologyLars Juhl Jensen
 
A linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signalingA linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signalingLars Juhl Jensen
 
Using side effects for drug target identification
Using side effects for drug target identificationUsing side effects for drug target identification
Using side effects for drug target identificationLars Juhl Jensen
 
Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015Ann-Marie Roche
 
Solving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using ReaxysSolving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using ReaxysReaxys
 
Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationLars Juhl Jensen
 
Network biology
Network biologyNetwork biology
Network biologyLars Juhl Jensen
 
Systems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningSystems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningLars Juhl Jensen
 
Unraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integrationUnraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integrationLars Juhl Jensen
 

More Related Content

What's hot

From neuronal information flow to connectomics
From neuronal information flow to connectomicsFrom neuronal information flow to connectomics
From neuronal information flow to connectomicsmasanori shimono
 
Mining and communicating biomedical knowledge
Mining and communicating biomedical knowledgeMining and communicating biomedical knowledge
Mining and communicating biomedical knowledgeLars Juhl Jensen
 
Unraveling signaling networks by data integration
Unraveling signaling networks by data integrationUnraveling signaling networks by data integration
Unraveling signaling networks by data integrationLars Juhl Jensen
 
Mining heaps of data and piles of papers
Mining heaps of data and piles of papersMining heaps of data and piles of papers
Mining heaps of data and piles of papersLars Juhl Jensen
 
Recent Pubs/Presentations
Recent Pubs/PresentationsRecent Pubs/Presentations
Recent Pubs/Presentationsgbtait
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationLars Juhl Jensen
 
Network biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data miningNetwork biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data miningLars Juhl Jensen
 
Effects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment PaperEffects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment PaperKenko95
 

What's hot (10)

From neuronal information flow to connectomics
From neuronal information flow to connectomicsFrom neuronal information flow to connectomics
From neuronal information flow to connectomics
 
Mining and communicating biomedical knowledge
Mining and communicating biomedical knowledgeMining and communicating biomedical knowledge
Mining and communicating biomedical knowledge
 
Unraveling signaling networks by data integration
Unraveling signaling networks by data integrationUnraveling signaling networks by data integration
Unraveling signaling networks by data integration
 
Mining heaps of data and piles of papers
Mining heaps of data and piles of papersMining heaps of data and piles of papers
Mining heaps of data and piles of papers
 
Recent Pubs/Presentations
Recent Pubs/PresentationsRecent Pubs/Presentations
Recent Pubs/Presentations
 
Organic Electronics
Organic ElectronicsOrganic Electronics
Organic Electronics
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integration
 
Dr. ghous narejo
Dr. ghous narejoDr. ghous narejo
Dr. ghous narejo
 
Network biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data miningNetwork biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data mining
 
Effects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment PaperEffects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment Paper
 

Viewers also liked

Retrieve Relevant Results with Reaxys
Retrieve Relevant Results with ReaxysRetrieve Relevant Results with Reaxys
Retrieve Relevant Results with ReaxysReaxys
 
Data integration and functional association networks
Data integration and functional association networksData integration and functional association networks
Data integration and functional association networksLars Juhl Jensen
 
A linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signalingA linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signalingLars Juhl Jensen
 
Using side effects for drug target identification
Using side effects for drug target identificationUsing side effects for drug target identification
Using side effects for drug target identificationLars Juhl Jensen
 
Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015Ann-Marie Roche
 
Solving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using ReaxysSolving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using ReaxysReaxys
 

Viewers also liked (7)

Retrieve Relevant Results with Reaxys
Retrieve Relevant Results with ReaxysRetrieve Relevant Results with Reaxys
Retrieve Relevant Results with Reaxys
 
Data integration and functional association networks
Data integration and functional association networksData integration and functional association networks
Data integration and functional association networks
 
Disease Systems Biology
Disease Systems BiologyDisease Systems Biology
Disease Systems Biology
 
A linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signalingA linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signaling
 
Using side effects for drug target identification
Using side effects for drug target identificationUsing side effects for drug target identification
Using side effects for drug target identification
 
Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015
 
Solving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using ReaxysSolving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using Reaxys
 

Similar to Protein networks: A basis for large-scale data mining

Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationLars Juhl Jensen
 
Systems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningSystems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningLars Juhl Jensen
 
Unraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integrationUnraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integrationLars Juhl Jensen
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsLars Juhl Jensen
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsLars Juhl Jensen
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsLars Juhl Jensen
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsLars Juhl Jensen
 
Computational Biology - Signaling networks and drug repositioning
Computational Biology - Signaling networks and drug repositioningComputational Biology - Signaling networks and drug repositioning
Computational Biology - Signaling networks and drug repositioningLars Juhl Jensen
 
Network biology - A basis for large-scale biomedica data mining
Network biology - A basis for large-scale biomedica data miningNetwork biology - A basis for large-scale biomedica data mining
Network biology - A basis for large-scale biomedica data miningLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 
Protein interaction networks
Protein interaction networksProtein interaction networks
Protein interaction networksLars Juhl Jensen
 
Unraveling cellular phosphorylation networks using computational biology
Unraveling cellular phosphorylation networks using computational biologyUnraveling cellular phosphorylation networks using computational biology
Unraveling cellular phosphorylation networks using computational biologyLars Juhl Jensen
 
Integration of heterogeneous data
Integration of heterogeneous dataIntegration of heterogeneous data
Integration of heterogeneous dataLars Juhl Jensen
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text miningLars Juhl Jensen
 
Data Integration and Systems Biology
Data Integration and Systems BiologyData Integration and Systems Biology
Data Integration and Systems BiologyLars Juhl Jensen
 
Visualization of large-scale protein and disease networks
Visualization of large-scale protein and disease networksVisualization of large-scale protein and disease networks
Visualization of large-scale protein and disease networksLars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningLars Juhl Jensen
 
Network biology - Large-scale data integration and text mining
Network biology - Large-scale data integration and text miningNetwork biology - Large-scale data integration and text mining
Network biology - Large-scale data integration and text miningLars Juhl Jensen
 

Similar to Protein networks: A basis for large-scale data mining (20)

Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data mining
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integration
 
Network biology
Network biologyNetwork biology
Network biology
 
Systems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningSystems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data mining
 
Unraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integrationUnraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integration
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomics
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomics
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomics
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomics
 
Computational Biology - Signaling networks and drug repositioning
Computational Biology - Signaling networks and drug repositioningComputational Biology - Signaling networks and drug repositioning
Computational Biology - Signaling networks and drug repositioning
 
Network biology - A basis for large-scale biomedica data mining
Network biology - A basis for large-scale biomedica data miningNetwork biology - A basis for large-scale biomedica data mining
Network biology - A basis for large-scale biomedica data mining
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
 
Protein interaction networks
Protein interaction networksProtein interaction networks
Protein interaction networks
 
Unraveling cellular phosphorylation networks using computational biology
Unraveling cellular phosphorylation networks using computational biologyUnraveling cellular phosphorylation networks using computational biology
Unraveling cellular phosphorylation networks using computational biology
 
Integration of heterogeneous data
Integration of heterogeneous dataIntegration of heterogeneous data
Integration of heterogeneous data
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text mining
 
Data Integration and Systems Biology
Data Integration and Systems BiologyData Integration and Systems Biology
Data Integration and Systems Biology
 
Visualization of large-scale protein and disease networks
Visualization of large-scale protein and disease networksVisualization of large-scale protein and disease networks
Visualization of large-scale protein and disease networks
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text mining
 
Network biology - Large-scale data integration and text mining
Network biology - Large-scale data integration and text miningNetwork biology - Large-scale data integration and text mining
Network biology - Large-scale data integration and text mining
 

More from Lars Juhl Jensen

One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...Lars Juhl Jensen
 
One tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineOne tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineLars Juhl Jensen
 
Extract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationExtract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationLars Juhl Jensen
 
Network visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeNetwork visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeLars Juhl Jensen
 
STRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataSTRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataLars Juhl Jensen
 
Biomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textBiomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textLars Juhl Jensen
 
Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Lars Juhl Jensen
 
Network Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeNetwork Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeLars Juhl Jensen
 
Cellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textCellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textLars Juhl Jensen
 
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Lars Juhl Jensen
 
STRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataSTRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataLars Juhl Jensen
 
Tagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionTagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionLars Juhl Jensen
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textLars Juhl Jensen
 
Medical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsMedical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsLars Juhl Jensen
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textLars Juhl Jensen
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsLars Juhl Jensen
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textLars Juhl Jensen
 
Biomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationBiomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationLars Juhl Jensen
 

More from Lars Juhl Jensen (20)

One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...
 
One tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineOne tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicine
 
Extract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationExtract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotation
 
Network visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeNetwork visualization: A crash course on using Cytoscape
Network visualization: A crash course on using Cytoscape
 
STRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataSTRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous data
 
Biomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textBiomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured text
 
Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...
 
Network Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeNetwork Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and Cytoscape
 
Cellular networks
Cellular networksCellular networks
Cellular networks
 
Cellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textCellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and text
 
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
 
STRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataSTRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous data
 
Tagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionTagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognition
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and text
 
Medical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsMedical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactions
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactions
 
Cellular Network Biology
Cellular Network BiologyCellular Network Biology
Cellular Network Biology
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Biomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationBiomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritization
 

Recently uploaded

ChatGPT and Beyond - Elevating DevOps Productivity
ChatGPT and Beyond - Elevating DevOps ProductivityChatGPT and Beyond - Elevating DevOps Productivity
ChatGPT and Beyond - Elevating DevOps ProductivityVictorSzoltysek
 
State of the Smart Building Startup Landscape 2024!
State of the Smart Building Startup Landscape 2024!State of the Smart Building Startup Landscape 2024!
State of the Smart Building Startup Landscape 2024!Memoori
 
Easier, Faster, and More Powerful – Alles Neu macht der Mai -Wir durchleuchte...
Easier, Faster, and More Powerful – Alles Neu macht der Mai -Wir durchleuchte...Easier, Faster, and More Powerful – Alles Neu macht der Mai -Wir durchleuchte...
Easier, Faster, and More Powerful – Alles Neu macht der Mai -Wir durchleuchte...panagenda
 
WebRTC and SIP not just audio and video @ OpenSIPS 2024
WebRTC and SIP not just audio and video @ OpenSIPS 2024WebRTC and SIP not just audio and video @ OpenSIPS 2024
WebRTC and SIP not just audio and video @ OpenSIPS 2024Lorenzo Miniero
 
Observability Concepts EVERY Developer Should Know (DevOpsDays Seattle)
Observability Concepts EVERY Developer Should Know (DevOpsDays Seattle)Observability Concepts EVERY Developer Should Know (DevOpsDays Seattle)
Observability Concepts EVERY Developer Should Know (DevOpsDays Seattle)Paige Cruz
 
“Iamnobody89757” Understanding the Mysterious of Digital Identity.pdf
“Iamnobody89757” Understanding the Mysterious of Digital Identity.pdf“Iamnobody89757” Understanding the Mysterious of Digital Identity.pdf
“Iamnobody89757” Understanding the Mysterious of Digital Identity.pdfMuhammad Subhan
 
TrustArc Webinar - Unified Trust Center for Privacy, Security, Compliance, an...
TrustArc Webinar - Unified Trust Center for Privacy, Security, Compliance, an...TrustArc Webinar - Unified Trust Center for Privacy, Security, Compliance, an...
TrustArc Webinar - Unified Trust Center for Privacy, Security, Compliance, an...TrustArc
 
How we scaled to 80K users by doing nothing!.pdf
How we scaled to 80K users by doing nothing!.pdfHow we scaled to 80K users by doing nothing!.pdf
How we scaled to 80K users by doing nothing!.pdfSrushith Repakula
 
Six Myths about Ontologies: The Basics of Formal Ontology
Six Myths about Ontologies: The Basics of Formal OntologySix Myths about Ontologies: The Basics of Formal Ontology
Six Myths about Ontologies: The Basics of Formal Ontologyjohnbeverley2021
 
The Ultimate Prompt Engineering Guide for Generative AI: Get the Most Out of ...
The Ultimate Prompt Engineering Guide for Generative AI: Get the Most Out of ...The Ultimate Prompt Engineering Guide for Generative AI: Get the Most Out of ...
The Ultimate Prompt Engineering Guide for Generative AI: Get the Most Out of ...SOFTTECHHUB
 
Event-Driven Architecture Masterclass: Challenges in Stream Processing
Event-Driven Architecture Masterclass: Challenges in Stream ProcessingEvent-Driven Architecture Masterclass: Challenges in Stream Processing
Event-Driven Architecture Masterclass: Challenges in Stream ProcessingScyllaDB
 
How to Check GPS Location with a Live Tracker in Pakistan
How to Check GPS Location with a Live Tracker in PakistanHow to Check GPS Location with a Live Tracker in Pakistan
How to Check GPS Location with a Live Tracker in Pakistandanishmna97
 
Working together SRE & Platform Engineering
Working together SRE & Platform EngineeringWorking together SRE & Platform Engineering
Working together SRE & Platform EngineeringMarcus Vechiato
 
Intro to Passkeys and the State of Passwordless.pptx
Intro to Passkeys and the State of Passwordless.pptxIntro to Passkeys and the State of Passwordless.pptx
Intro to Passkeys and the State of Passwordless.pptxFIDO Alliance
 
AI in Action: Real World Use Cases by Anitaraj
AI in Action: Real World Use Cases by AnitarajAI in Action: Real World Use Cases by Anitaraj
AI in Action: Real World Use Cases by AnitarajAnitaRaj43
 
JavaScript Usage Statistics 2024 - The Ultimate Guide
JavaScript Usage Statistics 2024 - The Ultimate GuideJavaScript Usage Statistics 2024 - The Ultimate Guide
JavaScript Usage Statistics 2024 - The Ultimate GuidePixlogix Infotech
 
Event-Driven Architecture Masterclass: Integrating Distributed Data Stores Ac...
Event-Driven Architecture Masterclass: Integrating Distributed Data Stores Ac...Event-Driven Architecture Masterclass: Integrating Distributed Data Stores Ac...
Event-Driven Architecture Masterclass: Integrating Distributed Data Stores Ac...ScyllaDB
 
Vector Search @ sw2con for slideshare.pptx
Vector Search @ sw2con for slideshare.pptxVector Search @ sw2con for slideshare.pptx
Vector Search @ sw2con for slideshare.pptxjbellis
 
JohnPollard-hybrid-app-RailsConf2024.pptx
JohnPollard-hybrid-app-RailsConf2024.pptxJohnPollard-hybrid-app-RailsConf2024.pptx
JohnPollard-hybrid-app-RailsConf2024.pptxJohnPollard37
 

Recently uploaded (20)

ChatGPT and Beyond - Elevating DevOps Productivity
ChatGPT and Beyond - Elevating DevOps ProductivityChatGPT and Beyond - Elevating DevOps Productivity
ChatGPT and Beyond - Elevating DevOps Productivity
 
State of the Smart Building Startup Landscape 2024!
State of the Smart Building Startup Landscape 2024!State of the Smart Building Startup Landscape 2024!
State of the Smart Building Startup Landscape 2024!
 
Easier, Faster, and More Powerful – Alles Neu macht der Mai -Wir durchleuchte...
Easier, Faster, and More Powerful – Alles Neu macht der Mai -Wir durchleuchte...Easier, Faster, and More Powerful – Alles Neu macht der Mai -Wir durchleuchte...
Easier, Faster, and More Powerful – Alles Neu macht der Mai -Wir durchleuchte...
 
WebRTC and SIP not just audio and video @ OpenSIPS 2024
WebRTC and SIP not just audio and video @ OpenSIPS 2024WebRTC and SIP not just audio and video @ OpenSIPS 2024
WebRTC and SIP not just audio and video @ OpenSIPS 2024
 
Observability Concepts EVERY Developer Should Know (DevOpsDays Seattle)
Observability Concepts EVERY Developer Should Know (DevOpsDays Seattle)Observability Concepts EVERY Developer Should Know (DevOpsDays Seattle)
Observability Concepts EVERY Developer Should Know (DevOpsDays Seattle)
 
“Iamnobody89757” Understanding the Mysterious of Digital Identity.pdf
“Iamnobody89757” Understanding the Mysterious of Digital Identity.pdf“Iamnobody89757” Understanding the Mysterious of Digital Identity.pdf
“Iamnobody89757” Understanding the Mysterious of Digital Identity.pdf
 
TrustArc Webinar - Unified Trust Center for Privacy, Security, Compliance, an...
TrustArc Webinar - Unified Trust Center for Privacy, Security, Compliance, an...TrustArc Webinar - Unified Trust Center for Privacy, Security, Compliance, an...
TrustArc Webinar - Unified Trust Center for Privacy, Security, Compliance, an...
 
How we scaled to 80K users by doing nothing!.pdf
How we scaled to 80K users by doing nothing!.pdfHow we scaled to 80K users by doing nothing!.pdf
How we scaled to 80K users by doing nothing!.pdf
 
Six Myths about Ontologies: The Basics of Formal Ontology
Six Myths about Ontologies: The Basics of Formal OntologySix Myths about Ontologies: The Basics of Formal Ontology
Six Myths about Ontologies: The Basics of Formal Ontology
 
The Ultimate Prompt Engineering Guide for Generative AI: Get the Most Out of ...
The Ultimate Prompt Engineering Guide for Generative AI: Get the Most Out of ...The Ultimate Prompt Engineering Guide for Generative AI: Get the Most Out of ...
The Ultimate Prompt Engineering Guide for Generative AI: Get the Most Out of ...
 
Event-Driven Architecture Masterclass: Challenges in Stream Processing
Event-Driven Architecture Masterclass: Challenges in Stream ProcessingEvent-Driven Architecture Masterclass: Challenges in Stream Processing
Event-Driven Architecture Masterclass: Challenges in Stream Processing
 
How to Check GPS Location with a Live Tracker in Pakistan
How to Check GPS Location with a Live Tracker in PakistanHow to Check GPS Location with a Live Tracker in Pakistan
How to Check GPS Location with a Live Tracker in Pakistan
 
Working together SRE & Platform Engineering
Working together SRE & Platform EngineeringWorking together SRE & Platform Engineering
Working together SRE & Platform Engineering
 
Intro to Passkeys and the State of Passwordless.pptx
Intro to Passkeys and the State of Passwordless.pptxIntro to Passkeys and the State of Passwordless.pptx
Intro to Passkeys and the State of Passwordless.pptx
 
AI in Action: Real World Use Cases by Anitaraj
AI in Action: Real World Use Cases by AnitarajAI in Action: Real World Use Cases by Anitaraj
AI in Action: Real World Use Cases by Anitaraj
 
Overview of Hyperledger Foundation
Overview of Hyperledger FoundationOverview of Hyperledger Foundation
Overview of Hyperledger Foundation
 
JavaScript Usage Statistics 2024 - The Ultimate Guide
JavaScript Usage Statistics 2024 - The Ultimate GuideJavaScript Usage Statistics 2024 - The Ultimate Guide
JavaScript Usage Statistics 2024 - The Ultimate Guide
 
Event-Driven Architecture Masterclass: Integrating Distributed Data Stores Ac...
Event-Driven Architecture Masterclass: Integrating Distributed Data Stores Ac...Event-Driven Architecture Masterclass: Integrating Distributed Data Stores Ac...
Event-Driven Architecture Masterclass: Integrating Distributed Data Stores Ac...
 
Vector Search @ sw2con for slideshare.pptx
Vector Search @ sw2con for slideshare.pptxVector Search @ sw2con for slideshare.pptx
Vector Search @ sw2con for slideshare.pptx
 
JohnPollard-hybrid-app-RailsConf2024.pptx
JohnPollard-hybrid-app-RailsConf2024.pptxJohnPollard-hybrid-app-RailsConf2024.pptx
JohnPollard-hybrid-app-RailsConf2024.pptx
 

Protein networks: A basis for large-scale data mining

Editor's Notes

  1. Integration Automation Collaboration
  2. Atlas of human kinases Atlases for phospho-binding proteins Atlases for model organisms Ubiquitination would be welcome