SlideShare a Scribd company logo

Protein networks: A basis for large-scale data mining

•Download as PPT, PDF•
•
Lars Juhl Jensen
Lars Juhl Jensen

MiTiN Consortium Meeting, Institute for Research in Biomedicine, Barcelona, Spain, March 9, 2010.

Technology
1 of 58
Protein networks A basis for large-scale data mining Lars Juhl Jensen
 
 
 
 
Phase 1 association networks
who?
 
Frishman et al., Modern Genome Annotation , 2009
STRING
computational predictions
Korbel et al., Nature Biotechnology , 2004
experimental data
Jensen & Bork, Science , 2008
curated knowledge
Letunic & Bork, Trends in Biochemical Sciences , 2008
literature mining
 
confidence scores
cross-species transfer
Phase 2 signaling networks
what?
phosphoproteomics
 
signaling events
NetPhorest
automation
Miller, Jensen et al., Science Signaling , 2008
specificity atlas
 
NetworKIN
Linding, Jensen, Ostheimer et al., Cell , 2007
benchmarking
Linding, Jensen, Ostheimer et al., Cell , 2007
context is crucial
Phase 3 dynamic networks
when?
cell-cycle regulation
 
microarray time courses
Gauthier et al., Nucleic Acids Research , 2007
protein interactions
temporal network
de Lichtenberg, Jensen et al., Science , 2005
de Lichtenberg, Jensen et al., Science , 2005
just-in-time assembly
de Lichtenberg, Jensen et al., Cell Cycle , 2007
evolutionary flexibility
individual genes
Jensen, Jensen, de Lichtenberg et al., Nature , 2006
summary
networks
data integration
specific predictions
systems properties
 
Acknowledgments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
larsjuhljensen

Recommended

Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data mining
Lars Juhl Jensen
 
Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text mining
Lars Juhl Jensen
 
Systems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningSystems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningLars Juhl Jensen
 
Protein–protein interaction networks
Protein–protein interaction networksProtein–protein interaction networks
Protein–protein interaction networks
Lars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text mining
Lars Juhl Jensen
 
From phosphoproteomics to signaling networks
From phosphoproteomics to signaling networksFrom phosphoproteomics to signaling networks
From phosphoproteomics to signaling networks
Lars Juhl Jensen
 

Recommended

Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data mining
Lars Juhl Jensen
 
Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text mining
Lars Juhl Jensen
 
Systems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningSystems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningLars Juhl Jensen
 
Protein–protein interaction networks
Protein–protein interaction networksProtein–protein interaction networks
Protein–protein interaction networks
Lars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text mining
Lars Juhl Jensen
 
From phosphoproteomics to signaling networks
From phosphoproteomics to signaling networksFrom phosphoproteomics to signaling networks
From phosphoproteomics to signaling networks
Lars Juhl Jensen
 
From neuronal information flow to connectomics
From neuronal information flow to connectomicsFrom neuronal information flow to connectomics
From neuronal information flow to connectomics
masanori shimono
 
Mining and communicating biomedical knowledge
Mining and communicating biomedical knowledgeMining and communicating biomedical knowledge
Mining and communicating biomedical knowledgeLars Juhl Jensen
 
Unraveling signaling networks by data integration
Unraveling signaling networks by data integrationUnraveling signaling networks by data integration
Unraveling signaling networks by data integration
Lars Juhl Jensen
 
Mining heaps of data and piles of papers
Mining heaps of data and piles of papersMining heaps of data and piles of papers
Mining heaps of data and piles of papers
Lars Juhl Jensen
 
Recent Pubs/Presentations
Recent Pubs/PresentationsRecent Pubs/Presentations
Recent Pubs/Presentationsgbtait
 
Organic Electronics
Organic ElectronicsOrganic Electronics
Organic ElectronicsVedant Makwana
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integration
Lars Juhl Jensen
 
Dr. ghous narejo
Dr. ghous narejoDr. ghous narejo
Dr. ghous narejoDr Ghous B Narejo
 
Network biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data miningNetwork biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data miningLars Juhl Jensen
 
Effects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment PaperEffects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment PaperKenko95
 
Retrieve Relevant Results with Reaxys
Retrieve Relevant Results with ReaxysRetrieve Relevant Results with Reaxys
Retrieve Relevant Results with Reaxys
Reaxys
 
Data integration and functional association networks
Data integration and functional association networksData integration and functional association networks
Data integration and functional association networks
Lars Juhl Jensen
 
Disease Systems Biology
Disease Systems BiologyDisease Systems Biology
Disease Systems BiologyLars Juhl Jensen
 
A linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signalingA linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signaling
Lars Juhl Jensen
 
Using side effects for drug target identification
Using side effects for drug target identificationUsing side effects for drug target identification
Using side effects for drug target identificationLars Juhl Jensen
 
Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015
Ann-Marie Roche
 
Solving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using ReaxysSolving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using Reaxys
Reaxys
 
Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integration
Lars Juhl Jensen
 
Network biology
Network biologyNetwork biology
Network biologyLars Juhl Jensen
 
Systems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningSystems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningLars Juhl Jensen
 
Unraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integrationUnraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integration
Lars Juhl Jensen
 

More Related Content

What's hot

From neuronal information flow to connectomics
From neuronal information flow to connectomicsFrom neuronal information flow to connectomics
From neuronal information flow to connectomics
masanori shimono
 
Mining and communicating biomedical knowledge
Mining and communicating biomedical knowledgeMining and communicating biomedical knowledge
Mining and communicating biomedical knowledgeLars Juhl Jensen
 
Unraveling signaling networks by data integration
Unraveling signaling networks by data integrationUnraveling signaling networks by data integration
Unraveling signaling networks by data integration
Lars Juhl Jensen
 
Mining heaps of data and piles of papers
Mining heaps of data and piles of papersMining heaps of data and piles of papers
Mining heaps of data and piles of papers
Lars Juhl Jensen
 
Recent Pubs/Presentations
Recent Pubs/PresentationsRecent Pubs/Presentations
Recent Pubs/Presentationsgbtait
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integration
Lars Juhl Jensen
 
Network biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data miningNetwork biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data miningLars Juhl Jensen
 
Effects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment PaperEffects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment PaperKenko95
 

What's hot (10)

From neuronal information flow to connectomics
From neuronal information flow to connectomicsFrom neuronal information flow to connectomics
From neuronal information flow to connectomics
 
Mining and communicating biomedical knowledge
Mining and communicating biomedical knowledgeMining and communicating biomedical knowledge
Mining and communicating biomedical knowledge
 
Unraveling signaling networks by data integration
Unraveling signaling networks by data integrationUnraveling signaling networks by data integration
Unraveling signaling networks by data integration
 
Mining heaps of data and piles of papers
Mining heaps of data and piles of papersMining heaps of data and piles of papers
Mining heaps of data and piles of papers
 
Recent Pubs/Presentations
Recent Pubs/PresentationsRecent Pubs/Presentations
Recent Pubs/Presentations
 
Organic Electronics
Organic ElectronicsOrganic Electronics
Organic Electronics
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integration
 
Dr. ghous narejo
Dr. ghous narejoDr. ghous narejo
Dr. ghous narejo
 
Network biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data miningNetwork biology: A basis for large-scale biomedical data mining
Network biology: A basis for large-scale biomedical data mining
 
Effects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment PaperEffects of Electromagnetism Exposure on Human Environment Paper
Effects of Electromagnetism Exposure on Human Environment Paper
 

Viewers also liked

Retrieve Relevant Results with Reaxys
Retrieve Relevant Results with ReaxysRetrieve Relevant Results with Reaxys
Retrieve Relevant Results with Reaxys
Reaxys
 
Data integration and functional association networks
Data integration and functional association networksData integration and functional association networks
Data integration and functional association networks
Lars Juhl Jensen
 
A linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signalingA linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signaling
Lars Juhl Jensen
 
Using side effects for drug target identification
Using side effects for drug target identificationUsing side effects for drug target identification
Using side effects for drug target identificationLars Juhl Jensen
 
Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015
Ann-Marie Roche
 
Solving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using ReaxysSolving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using Reaxys
Reaxys
 

Viewers also liked (7)

Retrieve Relevant Results with Reaxys
Retrieve Relevant Results with ReaxysRetrieve Relevant Results with Reaxys
Retrieve Relevant Results with Reaxys
 
Data integration and functional association networks
Data integration and functional association networksData integration and functional association networks
Data integration and functional association networks
 
Disease Systems Biology
Disease Systems BiologyDisease Systems Biology
Disease Systems Biology
 
A linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signalingA linear motif atlas for phosphorylation-dependent signaling
A linear motif atlas for phosphorylation-dependent signaling
 
Using side effects for drug target identification
Using side effects for drug target identificationUsing side effects for drug target identification
Using side effects for drug target identification
 
Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015Substance searching in Reaxys - Webinar - 24 March 2015
Substance searching in Reaxys - Webinar - 24 March 2015
 
Solving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using ReaxysSolving Tough Chemistry Problems Using Reaxys
Solving Tough Chemistry Problems Using Reaxys
 

Similar to Protein networks: A basis for large-scale data mining

Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningLars Juhl Jensen
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integration
Lars Juhl Jensen
 
Systems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningSystems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningLars Juhl Jensen
 
Unraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integrationUnraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integration
Lars Juhl Jensen
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsLars Juhl Jensen
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsLars Juhl Jensen
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsLars Juhl Jensen
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsLars Juhl Jensen
 
Computational Biology - Signaling networks and drug repositioning
Computational Biology - Signaling networks and drug repositioningComputational Biology - Signaling networks and drug repositioning
Computational Biology - Signaling networks and drug repositioning
Lars Juhl Jensen
 
Network biology - A basis for large-scale biomedica data mining
Network biology - A basis for large-scale biomedica data miningNetwork biology - A basis for large-scale biomedica data mining
Network biology - A basis for large-scale biomedica data miningLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 
Protein interaction networks
Protein interaction networksProtein interaction networks
Protein interaction networksLars Juhl Jensen
 
Unraveling cellular phosphorylation networks using computational biology
Unraveling cellular phosphorylation networks using computational biologyUnraveling cellular phosphorylation networks using computational biology
Unraveling cellular phosphorylation networks using computational biology
Lars Juhl Jensen
 
Integration of heterogeneous data
Integration of heterogeneous dataIntegration of heterogeneous data
Integration of heterogeneous data
Lars Juhl Jensen
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text mining
Lars Juhl Jensen
 
Data Integration and Systems Biology
Data Integration and Systems BiologyData Integration and Systems Biology
Data Integration and Systems Biology
Lars Juhl Jensen
 
Visualization of large-scale protein and disease networks
Visualization of large-scale protein and disease networksVisualization of large-scale protein and disease networks
Visualization of large-scale protein and disease networks
Lars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningLars Juhl Jensen
 
Network biology - Large-scale data integration and text mining
Network biology - Large-scale data integration and text miningNetwork biology - Large-scale data integration and text mining
Network biology - Large-scale data integration and text miningLars Juhl Jensen
 

Similar to Protein networks: A basis for large-scale data mining (20)

Protein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data miningProtein networks: A basis for large-scale data mining
Protein networks: A basis for large-scale data mining
 
Unraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integrationUnraveling signaling networks by large-scale data integration
Unraveling signaling networks by large-scale data integration
 
Network biology
Network biologyNetwork biology
Network biology
 
Systems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data miningSystems biology: Large-scale biomedical data mining
Systems biology: Large-scale biomedical data mining
 
Unraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integrationUnraveling signal transduction networks through data integration
Unraveling signal transduction networks through data integration
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomics
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomics
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomics
 
Advanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomicsAdvanced bioinformatics methods for proteomics
Advanced bioinformatics methods for proteomics
 
Computational Biology - Signaling networks and drug repositioning
Computational Biology - Signaling networks and drug repositioningComputational Biology - Signaling networks and drug repositioning
Computational Biology - Signaling networks and drug repositioning
 
Network biology - A basis for large-scale biomedica data mining
Network biology - A basis for large-scale biomedica data miningNetwork biology - A basis for large-scale biomedica data mining
Network biology - A basis for large-scale biomedica data mining
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
 
Protein interaction networks
Protein interaction networksProtein interaction networks
Protein interaction networks
 
Unraveling cellular phosphorylation networks using computational biology
Unraveling cellular phosphorylation networks using computational biologyUnraveling cellular phosphorylation networks using computational biology
Unraveling cellular phosphorylation networks using computational biology
 
Integration of heterogeneous data
Integration of heterogeneous dataIntegration of heterogeneous data
Integration of heterogeneous data
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text mining
 
Data Integration and Systems Biology
Data Integration and Systems BiologyData Integration and Systems Biology
Data Integration and Systems Biology
 
Visualization of large-scale protein and disease networks
Visualization of large-scale protein and disease networksVisualization of large-scale protein and disease networks
Visualization of large-scale protein and disease networks
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text mining
 
Network biology - Large-scale data integration and text mining
Network biology - Large-scale data integration and text miningNetwork biology - Large-scale data integration and text mining
Network biology - Large-scale data integration and text mining
 

More from Lars Juhl Jensen

One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...
Lars Juhl Jensen
 
One tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineOne tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicine
Lars Juhl Jensen
 
Extract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationExtract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotation
Lars Juhl Jensen
 
Network visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeNetwork visualization: A crash course on using Cytoscape
Network visualization: A crash course on using Cytoscape
Lars Juhl Jensen
 
STRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataSTRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous data
Lars Juhl Jensen
 
Biomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textBiomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured text
Lars Juhl Jensen
 
Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...
Lars Juhl Jensen
 
Network Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeNetwork Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and Cytoscape
Lars Juhl Jensen
 
Cellular networks
Cellular networksCellular networks
Cellular networks
Lars Juhl Jensen
 
Cellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textCellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and text
Lars Juhl Jensen
 
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Lars Juhl Jensen
 
STRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataSTRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous data
Lars Juhl Jensen
 
Tagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionTagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognition
Lars Juhl Jensen
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and text
Lars Juhl Jensen
 
Medical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsMedical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactions
Lars Juhl Jensen
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
Lars Juhl Jensen
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Lars Juhl Jensen
 
Cellular Network Biology
Cellular Network BiologyCellular Network Biology
Cellular Network Biology
Lars Juhl Jensen
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
Lars Juhl Jensen
 
Biomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationBiomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritization
Lars Juhl Jensen
 

More from Lars Juhl Jensen (20)

One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...
 
One tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineOne tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicine
 
Extract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationExtract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotation
 
Network visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeNetwork visualization: A crash course on using Cytoscape
Network visualization: A crash course on using Cytoscape
 
STRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataSTRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous data
 
Biomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textBiomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured text
 
Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...
 
Network Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeNetwork Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and Cytoscape
 
Cellular networks
Cellular networksCellular networks
Cellular networks
 
Cellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textCellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and text
 
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
 
STRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataSTRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous data
 
Tagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionTagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognition
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and text
 
Medical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsMedical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactions
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactions
 
Cellular Network Biology
Cellular Network BiologyCellular Network Biology
Cellular Network Biology
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Biomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationBiomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritization
 

Recently uploaded

GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
Neo4j
 
Alt. GDG Cloud Southlake #33: Boule & Rebala: Effective AppSec in SDLC using ...
Alt. GDG Cloud Southlake #33: Boule & Rebala: Effective AppSec in SDLC using ...Alt. GDG Cloud Southlake #33: Boule & Rebala: Effective AppSec in SDLC using ...
Alt. GDG Cloud Southlake #33: Boule & Rebala: Effective AppSec in SDLC using ...
James Anderson
 
By Design, not by Accident - Agile Venture Bolzano 2024
By Design, not by Accident - Agile Venture Bolzano 2024By Design, not by Accident - Agile Venture Bolzano 2024
By Design, not by Accident - Agile Venture Bolzano 2024
Pierluigi Pugliese
 
Monitoring Java Application Security with JDK Tools and JFR Events
Monitoring Java Application Security with JDK Tools and JFR EventsMonitoring Java Application Security with JDK Tools and JFR Events
Monitoring Java Application Security with JDK Tools and JFR Events
Ana-Maria Mihalceanu
 
LF Energy Webinar: Electrical Grid Modelling and Simulation Through PowSyBl -...
LF Energy Webinar: Electrical Grid Modelling and Simulation Through PowSyBl -...LF Energy Webinar: Electrical Grid Modelling and Simulation Through PowSyBl -...
LF Energy Webinar: Electrical Grid Modelling and Simulation Through PowSyBl -...
DanBrown980551
 
Why You Should Replace Windows 11 with Nitrux Linux 3.5.0 for enhanced perfor...
Why You Should Replace Windows 11 with Nitrux Linux 3.5.0 for enhanced perfor...Why You Should Replace Windows 11 with Nitrux Linux 3.5.0 for enhanced perfor...
Why You Should Replace Windows 11 with Nitrux Linux 3.5.0 for enhanced perfor...
SOFTTECHHUB
 
Free Complete Python - A step towards Data Science
Free Complete Python - A step towards Data ScienceFree Complete Python - A step towards Data Science
Free Complete Python - A step towards Data Science
RinaMondal9
 
FIDO Alliance Osaka Seminar: Passkeys and the Road Ahead.pdf
FIDO Alliance Osaka Seminar: Passkeys and the Road Ahead.pdfFIDO Alliance Osaka Seminar: Passkeys and the Road Ahead.pdf
FIDO Alliance Osaka Seminar: Passkeys and the Road Ahead.pdf
FIDO Alliance
 
The Future of Platform Engineering
The Future of Platform EngineeringThe Future of Platform Engineering
The Future of Platform Engineering
Jemma Hussein Allen
 
The Art of the Pitch: WordPress Relationships and Sales
The Art of the Pitch: WordPress Relationships and SalesThe Art of the Pitch: WordPress Relationships and Sales
The Art of the Pitch: WordPress Relationships and Sales
Laura Byrne
 
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdf
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdfSmart TV Buyer Insights Survey 2024 by 91mobiles.pdf
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdf
91mobiles
 
PHP Frameworks: I want to break free (IPC Berlin 2024)
PHP Frameworks: I want to break free (IPC Berlin 2024)PHP Frameworks: I want to break free (IPC Berlin 2024)
PHP Frameworks: I want to break free (IPC Berlin 2024)
Ralf Eggert
 
Transcript: Selling digital books in 2024: Insights from industry leaders - T...
Transcript: Selling digital books in 2024: Insights from industry leaders - T...Transcript: Selling digital books in 2024: Insights from industry leaders - T...
Transcript: Selling digital books in 2024: Insights from industry leaders - T...
BookNet Canada
 
UiPath Test Automation using UiPath Test Suite series, part 5
UiPath Test Automation using UiPath Test Suite series, part 5UiPath Test Automation using UiPath Test Suite series, part 5
UiPath Test Automation using UiPath Test Suite series, part 5
DianaGray10
 
UiPath Test Automation using UiPath Test Suite series, part 4
UiPath Test Automation using UiPath Test Suite series, part 4UiPath Test Automation using UiPath Test Suite series, part 4
UiPath Test Automation using UiPath Test Suite series, part 4
DianaGray10
 
Observability Concepts EVERY Developer Should Know -- DeveloperWeek Europe.pdf
Observability Concepts EVERY Developer Should Know -- DeveloperWeek Europe.pdfObservability Concepts EVERY Developer Should Know -- DeveloperWeek Europe.pdf
Observability Concepts EVERY Developer Should Know -- DeveloperWeek Europe.pdf
Paige Cruz
 
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdfFIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
FIDO Alliance
 
Elevating Tactical DDD Patterns Through Object Calisthenics
Elevating Tactical DDD Patterns Through Object CalisthenicsElevating Tactical DDD Patterns Through Object Calisthenics
Elevating Tactical DDD Patterns Through Object Calisthenics
Dorra BARTAGUIZ
 
Introduction to CHERI technology - Cybersecurity
Introduction to CHERI technology - CybersecurityIntroduction to CHERI technology - Cybersecurity
Introduction to CHERI technology - Cybersecurity
mikeeftimakis1
 
Video Streaming: Then, Now, and in the Future
Video Streaming: Then, Now, and in the FutureVideo Streaming: Then, Now, and in the Future
Video Streaming: Then, Now, and in the Future
Alpen-Adria-Universität
 

Recently uploaded (20)

GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
 
Alt. GDG Cloud Southlake #33: Boule & Rebala: Effective AppSec in SDLC using ...
Alt. GDG Cloud Southlake #33: Boule & Rebala: Effective AppSec in SDLC using ...Alt. GDG Cloud Southlake #33: Boule & Rebala: Effective AppSec in SDLC using ...
Alt. GDG Cloud Southlake #33: Boule & Rebala: Effective AppSec in SDLC using ...
 
By Design, not by Accident - Agile Venture Bolzano 2024
By Design, not by Accident - Agile Venture Bolzano 2024By Design, not by Accident - Agile Venture Bolzano 2024
By Design, not by Accident - Agile Venture Bolzano 2024
 
Monitoring Java Application Security with JDK Tools and JFR Events
Monitoring Java Application Security with JDK Tools and JFR EventsMonitoring Java Application Security with JDK Tools and JFR Events
Monitoring Java Application Security with JDK Tools and JFR Events
 
LF Energy Webinar: Electrical Grid Modelling and Simulation Through PowSyBl -...
LF Energy Webinar: Electrical Grid Modelling and Simulation Through PowSyBl -...LF Energy Webinar: Electrical Grid Modelling and Simulation Through PowSyBl -...
LF Energy Webinar: Electrical Grid Modelling and Simulation Through PowSyBl -...
 
Why You Should Replace Windows 11 with Nitrux Linux 3.5.0 for enhanced perfor...
Why You Should Replace Windows 11 with Nitrux Linux 3.5.0 for enhanced perfor...Why You Should Replace Windows 11 with Nitrux Linux 3.5.0 for enhanced perfor...
Why You Should Replace Windows 11 with Nitrux Linux 3.5.0 for enhanced perfor...
 
Free Complete Python - A step towards Data Science
Free Complete Python - A step towards Data ScienceFree Complete Python - A step towards Data Science
Free Complete Python - A step towards Data Science
 
FIDO Alliance Osaka Seminar: Passkeys and the Road Ahead.pdf
FIDO Alliance Osaka Seminar: Passkeys and the Road Ahead.pdfFIDO Alliance Osaka Seminar: Passkeys and the Road Ahead.pdf
FIDO Alliance Osaka Seminar: Passkeys and the Road Ahead.pdf
 
The Future of Platform Engineering
The Future of Platform EngineeringThe Future of Platform Engineering
The Future of Platform Engineering
 
The Art of the Pitch: WordPress Relationships and Sales
The Art of the Pitch: WordPress Relationships and SalesThe Art of the Pitch: WordPress Relationships and Sales
The Art of the Pitch: WordPress Relationships and Sales
 
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdf
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdfSmart TV Buyer Insights Survey 2024 by 91mobiles.pdf
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdf
 
PHP Frameworks: I want to break free (IPC Berlin 2024)
PHP Frameworks: I want to break free (IPC Berlin 2024)PHP Frameworks: I want to break free (IPC Berlin 2024)
PHP Frameworks: I want to break free (IPC Berlin 2024)
 
Transcript: Selling digital books in 2024: Insights from industry leaders - T...
Transcript: Selling digital books in 2024: Insights from industry leaders - T...Transcript: Selling digital books in 2024: Insights from industry leaders - T...
Transcript: Selling digital books in 2024: Insights from industry leaders - T...
 
UiPath Test Automation using UiPath Test Suite series, part 5
UiPath Test Automation using UiPath Test Suite series, part 5UiPath Test Automation using UiPath Test Suite series, part 5
UiPath Test Automation using UiPath Test Suite series, part 5
 
UiPath Test Automation using UiPath Test Suite series, part 4
UiPath Test Automation using UiPath Test Suite series, part 4UiPath Test Automation using UiPath Test Suite series, part 4
UiPath Test Automation using UiPath Test Suite series, part 4
 
Observability Concepts EVERY Developer Should Know -- DeveloperWeek Europe.pdf
Observability Concepts EVERY Developer Should Know -- DeveloperWeek Europe.pdfObservability Concepts EVERY Developer Should Know -- DeveloperWeek Europe.pdf
Observability Concepts EVERY Developer Should Know -- DeveloperWeek Europe.pdf
 
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdfFIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
 
Elevating Tactical DDD Patterns Through Object Calisthenics
Elevating Tactical DDD Patterns Through Object CalisthenicsElevating Tactical DDD Patterns Through Object Calisthenics
Elevating Tactical DDD Patterns Through Object Calisthenics
 
Introduction to CHERI technology - Cybersecurity
Introduction to CHERI technology - CybersecurityIntroduction to CHERI technology - Cybersecurity
Introduction to CHERI technology - Cybersecurity
 
Video Streaming: Then, Now, and in the Future
Video Streaming: Then, Now, and in the FutureVideo Streaming: Then, Now, and in the Future
Video Streaming: Then, Now, and in the Future
 

Protein networks: A basis for large-scale data mining

Editor's Notes

  1. Integration Automation Collaboration
  2. Atlas of human kinases Atlases for phospho-binding proteins Atlases for model organisms Ubiquitination would be welcome