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IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND 
BIOINFORMATICS, VOL. 11, NO. 3, MAY/JUNE 2014 
Mining Gene Expression Data Focusing Cancer Therapeutics: A Digest
Abstract 
 An understanding towards genetics and epigenetics is essential to cope up 
with the paradigm shift which is underway. Personalized medicine and gene 
therapy will confluence the days to come. 
 This review highlights traditional approaches as well as current advancements 
in the analysis of the gene expression data from cancer perspective. 
 Due to improvements in biometric instrumentation and automation, it has 
become easier to collect a lot of experimental data in molecular biology. 
 Analysis of such data is extremely important as it leads to knowledge discovery 
that can be validated by experiments. Previously, the diagnosis of complex 
genetic diseases has conventionally been done based on the non-molecular 
characteristics like kind of tumor tissue, pathological characteristics, and 
clinical phase. 
 The microarray data can be well accounted for high dimensional space and 
noise. Same were the reasons for ineffective and imprecise results. Several 
machine learning and data mining techniques are presently applied for 
identifying cancer using gene expression data. 
 While differences in efficiency do exist, none of the well-established 
approaches is uniformly superior to others. The quality of algorithm is 
important, but is not in itself a guarantee of the quality of a specific data 
analysis.
EXISTING SYSTEM 
 Gene expression is the activation of a gene that results in a 
protein which tends to indentify only the Gene 
manipulation for Cáncer therapeutics. 
 In our existing approac , identification of cancer by the gene 
expression have been implemented. 
 The Genome of a Differentiated Cell Contains all the Genes 
required to find the affected cells using Microarrays to 
Investigate the “Expression” of Thousands of Genes at a 
Time. 
 Splicing 
 Polyadenylation 
 Stability 
 Discretized gene expressions can be used as descriptors of 
the specific states of gene for the cancer prediction analysis.
PROPOSED SYSTEM 
 Predicting Cancer by analyzing gene and converting the 
gene expression is the proposed concept of our project, 
which leads to identifying and analyzing the cancer result 
set . 
 Controlling Gene Activity From Gene to Functional Protein 
& Phenotype has also been analyzed in order to identify the 
cancer cells. 
 In our proposed methodology, the experts documental DNA 
data methylation(Gene expression segments) is a kind of 
binding site for proteins which make DNA inaccessible to be 
in alive state. 
 Semantic Ontology based Mining Gene Expression analysis 
tends to Compare the gene expression values by using the 
comparative Knowledge Consolidator. 
 Supervised Multi Attribute Clustering Algorithm has been 
used to find the Best Rule Classification in the gene 
expression to find the Final Prediction of cancer disease
SYSTEM ARCHITECTURE 
• HARWARE REQUIREMENT: 
Processor : Core 2 duo 
Speed : 2.2GHZ 
RAM : 2GB 
Hard Disk : 160GB 
• SOFTWARE REQUIREMENT: 
Platform : DOTNET (VS2010) , ASP.NET Dotnet 
framework 4.0 
Database : SQL Server 2008 R2
ARCHITECTURE DIAGRAM

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Mining Gene Expression Data Focusing Cancer Therapeutics: A Digest

  • 1. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOL. 11, NO. 3, MAY/JUNE 2014 Mining Gene Expression Data Focusing Cancer Therapeutics: A Digest
  • 2. Abstract  An understanding towards genetics and epigenetics is essential to cope up with the paradigm shift which is underway. Personalized medicine and gene therapy will confluence the days to come.  This review highlights traditional approaches as well as current advancements in the analysis of the gene expression data from cancer perspective.  Due to improvements in biometric instrumentation and automation, it has become easier to collect a lot of experimental data in molecular biology.  Analysis of such data is extremely important as it leads to knowledge discovery that can be validated by experiments. Previously, the diagnosis of complex genetic diseases has conventionally been done based on the non-molecular characteristics like kind of tumor tissue, pathological characteristics, and clinical phase.  The microarray data can be well accounted for high dimensional space and noise. Same were the reasons for ineffective and imprecise results. Several machine learning and data mining techniques are presently applied for identifying cancer using gene expression data.  While differences in efficiency do exist, none of the well-established approaches is uniformly superior to others. The quality of algorithm is important, but is not in itself a guarantee of the quality of a specific data analysis.
  • 3. EXISTING SYSTEM  Gene expression is the activation of a gene that results in a protein which tends to indentify only the Gene manipulation for Cáncer therapeutics.  In our existing approac , identification of cancer by the gene expression have been implemented.  The Genome of a Differentiated Cell Contains all the Genes required to find the affected cells using Microarrays to Investigate the “Expression” of Thousands of Genes at a Time.  Splicing  Polyadenylation  Stability  Discretized gene expressions can be used as descriptors of the specific states of gene for the cancer prediction analysis.
  • 4. PROPOSED SYSTEM  Predicting Cancer by analyzing gene and converting the gene expression is the proposed concept of our project, which leads to identifying and analyzing the cancer result set .  Controlling Gene Activity From Gene to Functional Protein & Phenotype has also been analyzed in order to identify the cancer cells.  In our proposed methodology, the experts documental DNA data methylation(Gene expression segments) is a kind of binding site for proteins which make DNA inaccessible to be in alive state.  Semantic Ontology based Mining Gene Expression analysis tends to Compare the gene expression values by using the comparative Knowledge Consolidator.  Supervised Multi Attribute Clustering Algorithm has been used to find the Best Rule Classification in the gene expression to find the Final Prediction of cancer disease
  • 5. SYSTEM ARCHITECTURE • HARWARE REQUIREMENT: Processor : Core 2 duo Speed : 2.2GHZ RAM : 2GB Hard Disk : 160GB • SOFTWARE REQUIREMENT: Platform : DOTNET (VS2010) , ASP.NET Dotnet framework 4.0 Database : SQL Server 2008 R2