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http://udock.fr
Who ?
Matthieu Montes
CNAM GBA

Guillaume Levieux
CNAM CEDRIC
video
Why ?
How ?
Gamification
• Electrostatics
Gamification
• Shape
Gamification
• Grapnels and touch like interface
Gamification
• Realtime feedbacks
Gamification
• Enrich
Then ?
Player behavior modeling
• Online log of every in game action
• Online log of best poses
• Offline analysis to :
– Find interesting solutions from naive users
– Find new heuristics for docking algorithms
– Feed the design process
Quick and dirty prototyping
Protein coordinate file (PDB)
Chimera 
DockPrep

Deleting waters
Repairing side‐chains
Adding hydrogens
Assigning partial charges
Writing in mol2 format

Protein coordinate file (mol2)
Udock loader

Generation of the 3D mesh
Generation of the SES
Coloration of the SES

Protein 3D object
Bullet

Generation of the collision mesh

Interactive Protein object
Protein coordinate file (PDB)
Teaching
Validation
Further work

• Gamification process
• Offline version for researchers
• Multiple vizualisation methods
Thanks !
Questions ?

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