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www.pirbright.ac.ukThe Pirbright Institute receives strategic funding from BBSRC.
Trans-pool movement of two serotype A
lineages:
A/ASIA/G-VII AND A/AFRICA/G-IV
Kasia Bachanek-Bankowska
Virus movement tracing
Bachanek-Bankowska K., Di Nardo A. et al., 2018
capsid
Conjectured FMD global distribution
Pool 1
O, A, Asia 1
Pool 2
O, A, Asia 1
Pool 3
O, A, Asia 1
Pool 4
O, A SAT 1-2-3
Pool 6
O, A SAT 1-2-3
Pool 5
O, A SAT 1-2
Pool 7
O
Pool 4+5: O/EA-3 SAT 2/VII A/AFRICA/G-IV
Pool 2+3: O/ME-SA/PanAsia-2 O/ME-SA/Ind-2001 Asia1 A/ASIA/Iran-05 A/ASIA/G-VII
A/AFRICA/G-IV
West Africa
Algeria/Tunisia
East Africa
Egypt
G.Pezzoni et al., 2018
O/EA-3
East Africa
Egypt
Israel/State of Palestine
West Africa
West Africa
East Africa
Egypt/Libya
Oman/Saudi Arabia
SAT 2/VII
• Three main lineages O/EA-3, SAT 2/VII and A/AFRICA/G-IV
dominate the FMDV ecological landscape in Northern part of
Africa.
• Precise movement of viruses is not possible to be established
due to scarce sample/sequence availability but there is a
strong evidence of East to West movement.
• Multiple outbreaks due to the dominant serotypes/lineages
occurred in North Africa. There is evidence that outbreaks in
Egypt and Libya are caused by viruses of East African origin,
while outbreaks in the Maghreb region are related to viruses
of West Africa origin.
• Due to similarities in movement patterns of the dominant
viruses, it is highly likely that outbreaks due to multiple
serotypes/lineages may occur.
A/AFRICA/G-VII: key points
Conjectured FMD global distribution
Pool 1
O, A, Asia 1
Pool 2
O, A, Asia 1
Pool 3
O, A, Asia 1
Pool 4
O, A SAT 1-2-3
Pool 6
O, A SAT 1-2-3
Pool 5
O, A SAT 1-2
Pool 7
O
Pool 2+3: O/ME-SA/PanAsia-2 O/ME-SA/Ind-2001 Asia1 A/ASIA/Iran-05 A/ASIA/G-VII
A/ASIA/G-VII: background
• Outbreaks in Saudi Arabia, Armenia,
Iran, Turkey between 2015-2016
• Evidence of at least two
independent introductions to the
region
• 2017: detection in Israel
Bachanek-Bankowska K. et al., 2018
Bases on VP1 analyses only, it is difficult to conclude the direction of virus movement in the
region.
“Melting pot” of viruses?
FMDV lineages circulating in Pools 2 and 3
O/ME-SA/Ind-2001
O/ME-SA/PanAsia-2
A/ASIA/G-VII (genotype 18)
A/ASIA/Iran-05
ASIA 1
Maps credits: A. Di Nardo
259 whole gnome sequences,
(including 74 unpublished sequences)B. Brito at al., 2018
Evidence of
intra-linage
recombination in
Southeast Asia
A/ASIA/G-VII:
non-structural components have different ancestral origin
A/ASIA/G-VII
A/ASIA/Iran-05
A/ASIA/Iran-96
A/ASIA/unnamed
Asia 1
O/ME-SA/Ind-2001d
O/ME-SA/Ind-2001e
O/ME-SA/PanAsia
O/ME-SA/PanAsia-2
O/ME-SA/unnamed
O/ME-SA/Ind-2001d
Pandemicsupto2015
O/M
E-SA/Ind-2001e
Pandem
ics after 2015
M
iddle East viruses
MiddleEastviruses
TheIndiansubcontinentviruses
Middle East
2015-2018
BHU/NEP 2017
IND 2003-2008
O/ME-SA/PanAsia-2/QOM-
15
IRN/ISR 2016-2017
A/ASIA/G-VII: The Middle East 2015-2016
A/ASIA/G-VII: ISR/IRN 2016-2017
O/ME-SA/PanAsia-2/QOM-15
Recombination within 3Dpol
between the A/ASIA/G-VII
and the
O/ME-SA/PanAsia-2/QOM-15
viruses in the Middle East
Recombination analyses: SimPlot
• There is evidence that in A/ASIA/G-VII viruses, the regions
encoding non-structural protein has different ancestral
origin.
• Viruses of the A/ASIA/G-VII and O/ME-SA/PanAsia-2/QOM-
15 can exchange genetic material. The direction of the
exchange is not established yet.
• Further analyses are on the way to understand the mosaic
structure of FMDV genomes which might lead to better
understanding of emergence and spread of new and
upcoming lineages.
A/ASIA/G-VII: key points
FMD viruses exist in complex ecological niches
where multiple serotypes and lineages
co-exist and evolve.
Continued monitoring and vigilance is
necessary.
Emiliana Brocchi
Giulia Pezzoni
Santina Grazioli
Labib Bakkali-Kassimi
Ünal Parlak
Pelin Göktuna
Sharon Karniely, Boris Gelman
We would like to thank veterinary authorities in the
countries which have submitted samples to WRLFMD
Acknowledgments
Funding:
Kimron Veterinary Institute
ŞAP Institute
Jemma Wadsworth
Ashley Gray
Don King
Nick Knowles
SE2943

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Trans-pool movement of two serotype A lineages: A/ASIA/G-VII AND A/AFRICA/G-IV11.(K.Bankowska)

  • 1. www.pirbright.ac.ukThe Pirbright Institute receives strategic funding from BBSRC. Trans-pool movement of two serotype A lineages: A/ASIA/G-VII AND A/AFRICA/G-IV Kasia Bachanek-Bankowska
  • 2. Virus movement tracing Bachanek-Bankowska K., Di Nardo A. et al., 2018 capsid
  • 3. Conjectured FMD global distribution Pool 1 O, A, Asia 1 Pool 2 O, A, Asia 1 Pool 3 O, A, Asia 1 Pool 4 O, A SAT 1-2-3 Pool 6 O, A SAT 1-2-3 Pool 5 O, A SAT 1-2 Pool 7 O Pool 4+5: O/EA-3 SAT 2/VII A/AFRICA/G-IV Pool 2+3: O/ME-SA/PanAsia-2 O/ME-SA/Ind-2001 Asia1 A/ASIA/Iran-05 A/ASIA/G-VII
  • 7. • Three main lineages O/EA-3, SAT 2/VII and A/AFRICA/G-IV dominate the FMDV ecological landscape in Northern part of Africa. • Precise movement of viruses is not possible to be established due to scarce sample/sequence availability but there is a strong evidence of East to West movement. • Multiple outbreaks due to the dominant serotypes/lineages occurred in North Africa. There is evidence that outbreaks in Egypt and Libya are caused by viruses of East African origin, while outbreaks in the Maghreb region are related to viruses of West Africa origin. • Due to similarities in movement patterns of the dominant viruses, it is highly likely that outbreaks due to multiple serotypes/lineages may occur. A/AFRICA/G-VII: key points
  • 8. Conjectured FMD global distribution Pool 1 O, A, Asia 1 Pool 2 O, A, Asia 1 Pool 3 O, A, Asia 1 Pool 4 O, A SAT 1-2-3 Pool 6 O, A SAT 1-2-3 Pool 5 O, A SAT 1-2 Pool 7 O Pool 2+3: O/ME-SA/PanAsia-2 O/ME-SA/Ind-2001 Asia1 A/ASIA/Iran-05 A/ASIA/G-VII
  • 9. A/ASIA/G-VII: background • Outbreaks in Saudi Arabia, Armenia, Iran, Turkey between 2015-2016 • Evidence of at least two independent introductions to the region • 2017: detection in Israel Bachanek-Bankowska K. et al., 2018 Bases on VP1 analyses only, it is difficult to conclude the direction of virus movement in the region.
  • 10. “Melting pot” of viruses? FMDV lineages circulating in Pools 2 and 3 O/ME-SA/Ind-2001 O/ME-SA/PanAsia-2 A/ASIA/G-VII (genotype 18) A/ASIA/Iran-05 ASIA 1 Maps credits: A. Di Nardo 259 whole gnome sequences, (including 74 unpublished sequences)B. Brito at al., 2018 Evidence of intra-linage recombination in Southeast Asia
  • 11. A/ASIA/G-VII: non-structural components have different ancestral origin A/ASIA/G-VII A/ASIA/Iran-05 A/ASIA/Iran-96 A/ASIA/unnamed Asia 1 O/ME-SA/Ind-2001d O/ME-SA/Ind-2001e O/ME-SA/PanAsia O/ME-SA/PanAsia-2 O/ME-SA/unnamed O/ME-SA/Ind-2001d Pandemicsupto2015 O/M E-SA/Ind-2001e Pandem ics after 2015 M iddle East viruses MiddleEastviruses TheIndiansubcontinentviruses Middle East 2015-2018 BHU/NEP 2017 IND 2003-2008 O/ME-SA/PanAsia-2/QOM- 15 IRN/ISR 2016-2017
  • 12. A/ASIA/G-VII: The Middle East 2015-2016 A/ASIA/G-VII: ISR/IRN 2016-2017 O/ME-SA/PanAsia-2/QOM-15 Recombination within 3Dpol between the A/ASIA/G-VII and the O/ME-SA/PanAsia-2/QOM-15 viruses in the Middle East Recombination analyses: SimPlot
  • 13. • There is evidence that in A/ASIA/G-VII viruses, the regions encoding non-structural protein has different ancestral origin. • Viruses of the A/ASIA/G-VII and O/ME-SA/PanAsia-2/QOM- 15 can exchange genetic material. The direction of the exchange is not established yet. • Further analyses are on the way to understand the mosaic structure of FMDV genomes which might lead to better understanding of emergence and spread of new and upcoming lineages. A/ASIA/G-VII: key points
  • 14. FMD viruses exist in complex ecological niches where multiple serotypes and lineages co-exist and evolve. Continued monitoring and vigilance is necessary.
  • 15. Emiliana Brocchi Giulia Pezzoni Santina Grazioli Labib Bakkali-Kassimi Ünal Parlak Pelin Göktuna Sharon Karniely, Boris Gelman We would like to thank veterinary authorities in the countries which have submitted samples to WRLFMD Acknowledgments Funding: Kimron Veterinary Institute ŞAP Institute Jemma Wadsworth Ashley Gray Don King Nick Knowles SE2943