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Claire Colenutt
Evaluation of environmental
sampling as a low technology
method for surveillance of
foot-and-mouth disease in an
endemic area
Environmental surveillance
Surveillance strategies for infectious disease
- Notifiable diseases
- Clinical surveillance
- Syndromic surveillance
Environmental transmission
Room 1
Day 0
C1 C1
Day 2-3
C1
C1 C2
C2
Day 4-5
C3 C3
Room 1
Room 1 Room 2
Day 3-6
C2 C2
Day 6-7
C4C4
Room 3
Day 6-9
C2C2
Day 9-10
C5 C5
C1- Needle inoculated
C2- Direct contact challenge
C3 + C5 – Post-clinical fomite challenge
C4- Pre-clinical fomite challenge
Room 2
C1C1
Room 3
C2 C2
24 hr gap between C1s/C2s and C3s
Environmental detection of FMDV in an
endemic setting
Environmental detection of FMDV in an
endemic setting
Environmental sampling in Kathmandu
• November 2016
• April 2017
• November 2017
Lesion age vs. percent positive samples
0
10
20
30
40
50
60
70
80
90
100
Wood Brick Ground Feed trough Metal
%ofpositiveenvironmental
samples
% +ve (outside) % +ve (inside)
Sampling locations
• Generally more likely to recover FMDV RNA from samples collected inside
an animal shelter
• See Emma Brown’s poster for more details on recovery of FMDV from a
selection of surface materials
Aerosol sampling
Environmental samples
Use of environmental samples with penside tests.
- Lateral flow devices
- Use of TCOR-8 (plus extraction step)
KY077612.1 FMDV/O/ BAN/LK/Sa-248/2015
MG972576.1 FMDV/O/NEP 34/2016
MG972570.1 FMDV/O/NEP 28/2016
MG972575.1 FMDV/O/NEP 33/2016
MG972558.1 FMDV/O/NEP /10/2016
KY449054.1 FMDV/O/NEP6/2016
MG972560.1 FMDV/O/NEP 12/2016
KY449050.1 FMDV/O/NEP17/2015
MG972483.1 FMDV/O/ BHU/9/2016
MG972482.1 FMDV/O/ BHU/8/2016
MG983691.1 FMDV/O/ BHU/9/2016
MG972484.1 FMDV/O/ BHU/10/2016
MG972562.1 FMDV/O/NEP 14/2016
KY449051.1 FMDV/O/NEP19/2015
MG972569.1 FMDV/O/NEP 27/2016
MG972568.1 FMDV/O/NEP 25/2016
MG972564.1 FMDV/O/NEP 20/2016
FMDV/O/NEP/Environ-farm6/2017
MG972579.1 FMDV/O/NEP 37/2016
MG972577.1 FMDV/O/NEP 35/2016
MG972548.1 FMDV/O/NEP/18/2015
MG972549.1 FMDV/O/NEP 21/2015
MG972480.1 FMDV/O/ BHU/2/2016
KY077611.1 FMDV/O/ BAN/NL/Lo-245/2015
KX712091.1 FMDV/O/BAN/GO/Ka-236(Pig)/2015
KY077610.1 FMDV/O/ BAN/SI/Sh-234/2015
KY077621.1 FMDV/O/ BAN/TG/Ba-268/2015
KY077613.1 FMDV/O/ BAN/LK/Sa-249/2015
JX070623.1 FMDV/ OTNNa1211 VP1
KC506528.1 FMDV/ O/IND150/2012
KC506529.1 FMDV/ O/IND171/2012
KC506530.1 FMDV/ O/IND193/2012
KP822945.1FMDV/O/ IND70/12
KC506527.1 FMDV/ O/IND141/2012
MG983689.1 FMDV/O/ BHU/12/2012
KC506535.1 FMDV/ O/IND20/2012
KC506537.1 FMDV/ O/IND166/2012
KC506536.1 FMDV/ O/IND53/2012
KC506533.1 FMDV/ O/IND1/2011
KC506534.1 FMDV/ O/IND81/2011
KC506531.1 FMDV/ O/IND227/2010
JX070613.1 FMDV/ OGUK2609 VP1
JX070615.1 FMDV/ OGUK2909 VP1
KY077608.1 FMDV/O/ BAN/DH/Dh-216/2015
KJ206908.1 FMDV/O/ BHU/1/2013
KJ175185.1 FMDV/O/ BAN_TA_Dh-186_2013
MG983690.1 FMDV/O/ BHU/3/2016
KT037119.1 FMDV/O/ BD_Gh_2_2013
KY077604.1 FMDV/O/ BAN/TA/Ma-200/2014
KY077605.1 FMDV/O/ BAN/GA/Ka-212/2014
KC506541.1 FMDV/ O/IND53/2011
KC506542.1 FMDV/ O/IND59/2011
KC506543.1 FMDV/ O/IND62/2011
KC506546.1 FMDV/ O/IND188/2011
99
98
94
86
99
99
99
87
76
98
99
81
99
96
91
86
89
93
90
99
0.01
Mana Mahapatra, Satya Parida and Jemma Wadsworth
VP1 sequencing from environmental
samples
Environmental sampling in goat markets
See poster for more information:
ENVIRONMENTAL SAMPLING: A
SURVEILLANCE TOOL FOR FOOT-
AND-MOUTH DISEASE VIRUS IN
MARKET PLACES
Environmental detection of FMDV
• Additional sampling – recovery of live virus for further characterisation
• Use of NGS to determine viral content of samples
• More sampling in markets to highlight how these sampling methods can be
used to supplement surveillance
Advantages Disadvantages
Detection of FMDV beyond
clinical signs
Low viral titres compared to
clinical samples
Low tech and non invasive Extraction step required for use
with mobile PCR.
Acknowledgements
The Pirbright Institute
Emma Brown
Simon Gubbins
Jemma Wadsworth
Mana Mahapatra
Satya Parida
David Paton
The Met Office
Noel Nelson
EuFMD
Jenny Maud
Bishnu Adhikari
Keith Sumption
Ministry of Livestock Development, Nepal
Sharmila Chapagain Kafle
Mukul Upadhyaya
Samjhana Kafle Pandey
Defra project SE2816
The EuFMD real time training
programme was funded by
the Department of Agriculture
and Water Resources,
Government of Australia and
facilitated by the Department
of Livestock Services,
Government of Nepal.

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Evaluation of environmental sampling as a low technology method for surveillance of foot-and-mouth disease in an endemic area (C. Colenutt)

  • 1. Claire Colenutt Evaluation of environmental sampling as a low technology method for surveillance of foot-and-mouth disease in an endemic area
  • 2. Environmental surveillance Surveillance strategies for infectious disease - Notifiable diseases - Clinical surveillance - Syndromic surveillance
  • 3. Environmental transmission Room 1 Day 0 C1 C1 Day 2-3 C1 C1 C2 C2 Day 4-5 C3 C3 Room 1 Room 1 Room 2 Day 3-6 C2 C2 Day 6-7 C4C4 Room 3 Day 6-9 C2C2 Day 9-10 C5 C5 C1- Needle inoculated C2- Direct contact challenge C3 + C5 – Post-clinical fomite challenge C4- Pre-clinical fomite challenge Room 2 C1C1 Room 3 C2 C2 24 hr gap between C1s/C2s and C3s
  • 4. Environmental detection of FMDV in an endemic setting
  • 5. Environmental detection of FMDV in an endemic setting
  • 6. Environmental sampling in Kathmandu • November 2016 • April 2017 • November 2017
  • 7. Lesion age vs. percent positive samples
  • 8. 0 10 20 30 40 50 60 70 80 90 100 Wood Brick Ground Feed trough Metal %ofpositiveenvironmental samples % +ve (outside) % +ve (inside) Sampling locations • Generally more likely to recover FMDV RNA from samples collected inside an animal shelter • See Emma Brown’s poster for more details on recovery of FMDV from a selection of surface materials
  • 10. Environmental samples Use of environmental samples with penside tests. - Lateral flow devices - Use of TCOR-8 (plus extraction step)
  • 11. KY077612.1 FMDV/O/ BAN/LK/Sa-248/2015 MG972576.1 FMDV/O/NEP 34/2016 MG972570.1 FMDV/O/NEP 28/2016 MG972575.1 FMDV/O/NEP 33/2016 MG972558.1 FMDV/O/NEP /10/2016 KY449054.1 FMDV/O/NEP6/2016 MG972560.1 FMDV/O/NEP 12/2016 KY449050.1 FMDV/O/NEP17/2015 MG972483.1 FMDV/O/ BHU/9/2016 MG972482.1 FMDV/O/ BHU/8/2016 MG983691.1 FMDV/O/ BHU/9/2016 MG972484.1 FMDV/O/ BHU/10/2016 MG972562.1 FMDV/O/NEP 14/2016 KY449051.1 FMDV/O/NEP19/2015 MG972569.1 FMDV/O/NEP 27/2016 MG972568.1 FMDV/O/NEP 25/2016 MG972564.1 FMDV/O/NEP 20/2016 FMDV/O/NEP/Environ-farm6/2017 MG972579.1 FMDV/O/NEP 37/2016 MG972577.1 FMDV/O/NEP 35/2016 MG972548.1 FMDV/O/NEP/18/2015 MG972549.1 FMDV/O/NEP 21/2015 MG972480.1 FMDV/O/ BHU/2/2016 KY077611.1 FMDV/O/ BAN/NL/Lo-245/2015 KX712091.1 FMDV/O/BAN/GO/Ka-236(Pig)/2015 KY077610.1 FMDV/O/ BAN/SI/Sh-234/2015 KY077621.1 FMDV/O/ BAN/TG/Ba-268/2015 KY077613.1 FMDV/O/ BAN/LK/Sa-249/2015 JX070623.1 FMDV/ OTNNa1211 VP1 KC506528.1 FMDV/ O/IND150/2012 KC506529.1 FMDV/ O/IND171/2012 KC506530.1 FMDV/ O/IND193/2012 KP822945.1FMDV/O/ IND70/12 KC506527.1 FMDV/ O/IND141/2012 MG983689.1 FMDV/O/ BHU/12/2012 KC506535.1 FMDV/ O/IND20/2012 KC506537.1 FMDV/ O/IND166/2012 KC506536.1 FMDV/ O/IND53/2012 KC506533.1 FMDV/ O/IND1/2011 KC506534.1 FMDV/ O/IND81/2011 KC506531.1 FMDV/ O/IND227/2010 JX070613.1 FMDV/ OGUK2609 VP1 JX070615.1 FMDV/ OGUK2909 VP1 KY077608.1 FMDV/O/ BAN/DH/Dh-216/2015 KJ206908.1 FMDV/O/ BHU/1/2013 KJ175185.1 FMDV/O/ BAN_TA_Dh-186_2013 MG983690.1 FMDV/O/ BHU/3/2016 KT037119.1 FMDV/O/ BD_Gh_2_2013 KY077604.1 FMDV/O/ BAN/TA/Ma-200/2014 KY077605.1 FMDV/O/ BAN/GA/Ka-212/2014 KC506541.1 FMDV/ O/IND53/2011 KC506542.1 FMDV/ O/IND59/2011 KC506543.1 FMDV/ O/IND62/2011 KC506546.1 FMDV/ O/IND188/2011 99 98 94 86 99 99 99 87 76 98 99 81 99 96 91 86 89 93 90 99 0.01 Mana Mahapatra, Satya Parida and Jemma Wadsworth VP1 sequencing from environmental samples
  • 12. Environmental sampling in goat markets See poster for more information: ENVIRONMENTAL SAMPLING: A SURVEILLANCE TOOL FOR FOOT- AND-MOUTH DISEASE VIRUS IN MARKET PLACES
  • 13. Environmental detection of FMDV • Additional sampling – recovery of live virus for further characterisation • Use of NGS to determine viral content of samples • More sampling in markets to highlight how these sampling methods can be used to supplement surveillance Advantages Disadvantages Detection of FMDV beyond clinical signs Low viral titres compared to clinical samples Low tech and non invasive Extraction step required for use with mobile PCR.
  • 14. Acknowledgements The Pirbright Institute Emma Brown Simon Gubbins Jemma Wadsworth Mana Mahapatra Satya Parida David Paton The Met Office Noel Nelson EuFMD Jenny Maud Bishnu Adhikari Keith Sumption Ministry of Livestock Development, Nepal Sharmila Chapagain Kafle Mukul Upadhyaya Samjhana Kafle Pandey Defra project SE2816 The EuFMD real time training programme was funded by the Department of Agriculture and Water Resources, Government of Australia and facilitated by the Department of Livestock Services, Government of Nepal.