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MICROSERVICES &TERAFLOPS

Effortlessly scaling data science with PyWren

#thecloudistoodamnhard
Shivaram Venkataraman
PhD Candidate, UC Berkeley
Eric
Jonas
Ben
Recht
Ion
Stoica
Qifan
Pu
Berkeley
Center for

Computational
Imaging
WHO AM I ?
PhD candidate.AMPLab, RISELab @ UC Berkeley
Dissertation: System design for large scale machine learning
Apache Spark PMC Member
Contributions to Spark core, MLlib, SparkR
“BIG” DATA
“BIG” DATA
(near-by) stars
“BIG” DATA
(near-by) stars neurons
“BIG” DATA
(near-by) stars neurons
“BIG” DATA
(near-by) stars neurons
size
number
data size
“BIG” DATA
(near-by) stars neurons
size
number
data size
10^9 m
1
2 PB
“BIG” DATA
(near-by) stars neurons
size
number
data size
10^9 m
1
2 PB
10^-5m
10^11
12 TB/sec
images courtesy NASA SOHO
you are here
images courtesy NASA SOHO
Sun in UV (304 Å)you are here
Solar Flare Prediction Using Photospheric and Coronal Image Data.
Jonas, Bobra, Shankar, Recht. American Geophysical Union, 2016
Solar Flare Prediction Using Photospheric and Coronal Image Data.
Jonas, Bobra, Shankar, Recht. American Geophysical Union, 2016
NEUROSCIENCE AT ALL SCALES
NEUROSCIENCE AT ALL SCALES
NEUROSCIENCE AT ALL SCALES
NEUROSCIENCE AT ALL SCALES
Adaptive	Optics
Superresolution
Adaptive	Optics
Superresolution
Tomography
Adaptive	Optics
Superresolution
Phase	contrastTomography
Adaptive	Optics
How do you get
busy physicists and
electrical engineers
to give up Matlab?
How do we get
busy astronomers
to give up IDL?
PREVIOUSLY, ON
PREVIOUSLY, ON
Why is there no
“cloud button”?
PREVIOUSLY, ON
#THECLOUDISTOODAMNHARD
#THECLOUDISTOODAMNHARD
• What type? what
instance? What base
image?
#THECLOUDISTOODAMNHARD
• What type? what
instance? What base
image?
• How many to spin up?
What price? spot?
#THECLOUDISTOODAMNHARD
• What type? what
instance? What base
image?
• How many to spin up?
What price? spot?
• wait,Wait,WAIT oh god
#THECLOUDISTOODAMNHARD
• What type? what
instance? What base
image?
• How many to spin up?
What price? spot?
• wait,Wait,WAIT oh god
• now what? DEVOPS
WHAT DO WE WANT?
1. Very little overhead for setup 

once someone has an AWS account. In particular,
no persistent overhead -- you don't have to keep
a large (expensive) cluster up and you don't have
to wait 10+ min for a cluster to come up
WHAT DO WE WANT?
2. As close to zero overhead for users as possible

In particular, anyone who can write python
should be able to invoke it through a reasonable
interface. It should support all legacy code
WHAT DO WE WANT?
3. Target jobs that run in the
minutes-or-more regime.
“Most wrens are small and rather inconspicuous, except
for their loud and often complex songs.”
PyWrenpywren.io
pip install pywren
PYWREN:THE API
USING
“SERVERLESS INFRASTRUCTURE”
Powered by Continuum Analytics
+
• 300 seconds 

single-core (AVX2)
• 512 MB in /tmp
• 1.5GB RAM
• Python, Java, Node
AWS LAMBDA
• 300 seconds 

single-core (AVX2)
• 512 MB in /tmp
• 1.5GB RAM
• Python, Java, Node
AWS LAMBDA
• 300 seconds 

single-core (AVX2)
• 512 MB in /tmp
• 1.5GB RAM
• Python, Java, Node
AWS LAMBDA
LAMBDA SCALABILITY
LAMBDA SCALABILITY
YOU CAN DO A LOT OF
WORK WITH MAP!
ETL
YOU CAN DO A LOT OF
WORK WITH MAP!
ETL
parameter
tuning
IMAGENET EXAMPLE
Preprocess 1.4M images from
IMAGENET
Compute GIST
image descriptor
(some random
python code off
the internet)
80%+ of time
is spent doing
actual work
HOW IT WORKS
your laptop the cloud
HOW IT WORKS
your laptop the cloud
future = runner.map(fn, data)
HOW IT WORKS
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
HOW IT WORKS
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
Put on S3
func datadatadata
HOW IT WORKS
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
Put on S3
Invoke Lambda
func datadatadata
HOW IT WORKS
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
Put on S3
Invoke Lambda
func datadatadata
HOW IT WORKS
pull job from s3
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
Put on S3
Invoke Lambda
func datadatadata
HOW IT WORKS
pull job from s3
download anaconda runtime
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
Put on S3
Invoke Lambda
func datadatadata
HOW IT WORKS
pull job from s3
download anaconda runtime
python to run code
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
Put on S3
Invoke Lambda
func datadatadata
HOW IT WORKS
pull job from s3
download anaconda runtime
python to run code
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
Put on S3
Invoke Lambda
func datadatadata
future.result()
HOW IT WORKS
pull job from s3
download anaconda runtime
python to run code
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
Put on S3
Invoke Lambda
func datadatadata
future.result()
poll S3
HOW IT WORKS
pull job from s3
download anaconda runtime
python to run code
pickle result
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
Put on S3
Invoke Lambda
func datadatadata
future.result()
poll S3
HOW IT WORKS
pull job from s3
download anaconda runtime
python to run code
pickle result
stick in S3
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
Put on S3
Invoke Lambda
func datadatadata
future.result()
poll S3
result
HOW IT WORKS
pull job from s3
download anaconda runtime
python to run code
pickle result
stick in S3
your laptop the cloud
future = runner.map(fn, data)
Serialize func and data
Put on S3
Invoke Lambda
func datadatadata
future.result()
poll S3
unpickle and return
result
THE ROLE OF SERIALIZATION
THE ROLE OF SERIALIZATION
• Python’s dynamism is a help!
THE ROLE OF SERIALIZATION
• Python’s dynamism is a help!
• default serialization method,“pickle”, doesn’t
support everything, leading to cloudpickle
THE ROLE OF SERIALIZATION
• Python’s dynamism is a help!
• default serialization method,“pickle”, doesn’t
support everything, leading to cloudpickle
• How to handle modules? recursively walk and
package
THE ROLE OF SERIALIZATION
• Python’s dynamism is a help!
• default serialization method,“pickle”, doesn’t
support everything, leading to cloudpickle
• How to handle modules? recursively walk and
package
• C-dependencies don’t work, so must build runtimes
(Leptotyphlops carlae)
(Leptotyphlops carlae)
Want our runtime to include
(Leptotyphlops carlae)
Start 1205MB
Want our runtime to include
(Leptotyphlops carlae)
Start
conda clean
1205MB
Want our runtime to include
(Leptotyphlops carlae)
Start
conda clean
977 MB
1205MB
Want our runtime to include
(Leptotyphlops carlae)
Start
conda clean
eliminate pkg
977 MB
1205MB
Want our runtime to include
(Leptotyphlops carlae)
Start
conda clean
eliminate pkg
977 MB
1205MB
946 MB
Want our runtime to include
(Leptotyphlops carlae)
Start
Delete non-AVX2 MKL
conda clean
eliminate pkg
977 MB
1205MB
946 MB
Want our runtime to include
(Leptotyphlops carlae)
Start
Delete non-AVX2 MKL
conda clean
eliminate pkg
977 MB
1205MB
946 MB
670 MB
Want our runtime to include
(Leptotyphlops carlae)
Start
Delete non-AVX2 MKL
strip shared libs
conda clean
eliminate pkg
977 MB
1205MB
946 MB
670 MB
Want our runtime to include
(Leptotyphlops carlae)
Start
Delete non-AVX2 MKL
strip shared libs
conda clean
eliminate pkg
977 MB
1205MB
946 MB
670 MB
510MB
Want our runtime to include
(Leptotyphlops carlae)
Start
Delete non-AVX2 MKL
strip shared libs
conda clean
eliminate pkg
delete pyc
977 MB
1205MB
946 MB
670 MB
510MB
Want our runtime to include
(Leptotyphlops carlae)
Start
Delete non-AVX2 MKL
strip shared libs
conda clean
eliminate pkg
delete pyc
977 MB
1205MB
441MB
946 MB
670 MB
510MB
Want our runtime to include
LIMITATIONS
(AND IDEAS FOR SOLUTIONS)
•Lambda limits
•S3 Limits
•richer operations
LIMITATIONS
(AND IDEAS FOR SOLUTIONS)
•Lambda limits
•S3 Limits
• richer operations
MAP IS NOT ENOUGH
MAP IS NOT ENOUGH?
A lot of data analytics looks like:
MAP IS NOT ENOUGH?
A lot of data analytics looks like:
Data
MAP IS NOT ENOUGH?
A lot of data analytics looks like:
ETL /
preprocessingData
MAP IS NOT ENOUGH?
A lot of data analytics looks like:
ETL /
preprocessing featurizationData
MAP IS NOT ENOUGH?
A lot of data analytics looks like:
ETL /
preprocessing featurizationData machine learning
MAP IS NOT ENOUGH?
A lot of data analytics looks like:
ETL /
preprocessing featurizationData machine learning
Great PyWren Fit
MAP IS NOT ENOUGH?
A lot of data analytics looks like:
ETL /
preprocessing featurizationData machine learning
Distributed!
Scale!TensorFlow
Deep MLBaseGreat PyWren Fit
MAP IS NOT ENOUGH?
A lot of data analytics looks like:
ETL /
preprocessing featurizationData machine learning
Distributed!
Scale!TensorFlow
Deep MLBaseGreat PyWren Fit
SINGLE-MACHINE REDUCE
What if we use one big
server !?
SINGLE-MACHINE REDUCE
What if we use one big
server !?
cores RAM COST
x1.32xlarge 64 2TB $14/hr
x1.16xlarge 32 1TB $7/hr
p2.16xlarge 32 + 

16 GPUs
750 GB $14/hr
r4.16xlarge 32 500 GB $4/hr
SINGLE-MACHINE REDUCE
What if we use one big
server !?
futures = exec.map(function, data)



answer = exec.reduce(reduce_func, futures)
cores RAM COST
x1.32xlarge 64 2TB $14/hr
x1.16xlarge 32 1TB $7/hr
p2.16xlarge 32 + 

16 GPUs
750 GB $14/hr
r4.16xlarge 32 500 GB $4/hr
WHAT ABOUT SHUFFLES ?
S3
TERASORT IN PYWREN
S3 map(partition_keys)
TERASORT IN PYWREN
S3 map(partition_keys)
Elastic Cache
(Redis)
TERASORT IN PYWREN
S3 map(partition_keys)
Elastic Cache
(Redis)
map(sort_partition)
TERASORT IN PYWREN
S3 map(partition_keys)
Elastic Cache
(Redis)
map(sort_partition) S3
TERASORT IN PYWREN
204
369
431
1,471
0 300 600 900 1200 1500 1800
(1000, 30)
(1000, 10)
(500, 10)
(100, 10)
time (seconds)
(workers,Redisshards)
invocation
setup
S3 read/write
compute
Redis read/write
1TB SORT
WIP: SCHEDULING ENGINE
WIP: SCHEDULING ENGINE
• Rate-limiting of invocation
• intelligent retry behavior (user-specified)
• straggler detection and mitigation
THE SERVERLESS FUTURE
THE SERVERLESS FUTURE
Where we are going:
THE SERVERLESS FUTURE
• Users Users Users (You !!!)
Where we are going:
THE SERVERLESS FUTURE
• Users Users Users (You !!!)
• Circumventing limitations
Where we are going:
THE SERVERLESS FUTURE
• Users Users Users (You !!!)
• Circumventing limitations
• Make serialization rock-solid
Where we are going:
THE SERVERLESS FUTURE
• Users Users Users (You !!!)
• Circumventing limitations
• Make serialization rock-solid
• Richer primitives!
Where we are going:
Effortlessly scaling data science
with PyWren
Eric Jonas Ben Recht Ion StoicaQifan Pu
http://pywren.io
https://github.com/pywren/pywren
Effortlessly scaling data science
with PyWren
Eric Jonas Ben Recht Ion StoicaQifan Pu

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