Proteins are made up of chains of amino acids that determine their shape and function. There are structural, hormone, carrier, and enzyme proteins. Enzymes speed up chemical reactions by fitting substrates into their active sites like keys in locks. Each enzyme only works on a specific substrate. Enzymes function best at an optimal temperature and pH, as extremes can denature the enzyme and change its shape. Mutations can occur spontaneously or due to radiation/chemicals and may lead to different proteins by changing the DNA code and amino acid order, with effects that can be harmful, neutral, or advantageous.