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Cisplatin
ABSTRACT:
Since the discovery of anti cancer activity of Cisplatin, it has enjoyed a huge proclamation and clinical hit.
In this report using Spartan `10 V1.1.0 Molecular mechanics and Hartee-Fock calculations have been performed
using different substituent on the central Platinum atom, substituent like F, Cl, Br, I, NH2, OH are used for studying
energy and geometrics. The parameters like bond length, bond angle, electrostatic charge, dipole moment, Energy
have been compared. The deviation in the bond length from the original molecule is observed greatest with iodine;
this might be due to the larger size. Further bond angle calculations have been performed; the most affected is the
bromine substituted; this might be due to the higher electronegativity. The electrostatic charge studies showed that
with the increase in charge of the substituent atom, the electro positive charge on the central metal atom kept
increasing. Dipole moment calculations showed that, when –OH group –NH3group is substituted it displayed
relatively lower dipole moment which interpreted the molecule is much more stable, than when iodine is substituted
which has relatively a much larger dipole moment.
INTRODUCTION:
Cancer is one of the most common
diseases in the world; it has also
become the most important cause
of deaths in recent years1
. The use
of metals in curing diseases can be
traced back almost 5000 years.
Transitional metal complexes are
nowadays used as alkylating
agents in the treatment of cancer.
The development of the
coordinating chemistry has
revolutionized and facilitated
chemists using metals
centers for synthesizing
coordinating complex
molecules as drugs, metal centers
being positively charged are able
to bind to the negatively charged
biomolecules2
.
Cisplatin is one those
complex molecule which has a
platinum center, it was only in
mid 1960`s when anticancer
activity of Cisplatin was
discovered. Cisplatin is believed
to exert its anticancer effect by
interacting with DNA, inducing
programmed cell death. Cisplatin
and its analogues interacts with
the purine base pairs in the DNA;
forming DNA-Pt (NH3)2-DNA,
which inhibits DNA replication
and ultimate cell death3
.
Cisplatin is a metallic
coordinating complex, molecular
formula is (NH3)2PtCl2. It has a
molecular weight of 300gm/mol.
It has square planar geometry. It is
white or deep yellow to yellow-
orange crystalline powder at room
temperature4
.
Fig 1: Structure of Cisplatin
Cisplatin
Cisplatin can be prepared by using
Potassium
tetracholoroplatinate(II), the first
NH3 ligand can be added at any
position the second one is added
to cis or trans to the bound amine
ligand5
. Further investigation with
this drug is complicated mode of
action of the drug.6
Cisplatin has –NH3 groups
attached to the central Platinum
metal atom, the bond distance
from Pt-Cl measure 2.5A, where
as the bond distance between Pt-
NH3 is 2.1A. The electro
negativity of Cl and N is 3.0, so
the charge is symmetrically
distributed, due to which the
molecule is slight soluble in water.
Table 1: Physicochemical properties
of Cisplatin
Property Data
Molecular Formula H6Cl2N2Pt
Molecular weight 300.1g/mol
Physical State Crystalline powder
Molecular Shape Square planar
Solubility Slightly soluble in
water, soluble in
dimethylprimanide
and N,N-
dimethylfor
mamide
Density 3.74gm/m3
Stability Transforms to
trans over time
2. MECHANISM OF ACTION:
Cancer can be considered a failure
of cell to undergo apoptosis. In
norma cells, sensors to cell
abnormalities lead to withdrawal
of survival signals, there by
leading to cell death7
. In Cisplatin,
it induces cell death of cancer cell
by interacting with the DNA
synthesis. The platinum atom
binds to the DNA base pairs; cross
linking of the complex occurs
when chloride ligand is displaced.
By this way several cross linking
occurs there by interfering with
the cell division, which in turn
activates apoptosis8-9
.
3. EXPERIMENTAL SECTION:
3.1 Computational Methods:
The present study on the
Cisplatin molecule is completely
theoretical. Using Spartan `10
V1.1.0 the theoretical studies have
been carried out on a high
performance computer. The
calculations that are carried out
include Molecular mechanics and
Hartree-Fock. The Equilibrium
Geometry studied with Hartree-
Fock is studied under 6-31G*. The
other calculations include simpler
findings like Bond Angle, Bond
Cisplatin
Length data and charges on the
atoms are calculated.
Further Calculations are
done by changing the ligands on
the central atom; atoms which are
more electronegative and also less
electronegative than the parent
molecule have been studied, along
with other ligands.
4. RESULTS AND
DISCUSSION:
Different forms of Cisplatin are
formed by substituting the –Cl
with different electron donating
groups and electron withdrawing
groups. The affect on the bond
length and bond angle have been
observed.
Fig. 2. Cisplatin and other substituted
forms of cisplatin
4.1 Molecular Mechanics
The Cisplatin molecule which
contains two chlorines, the
chlorines are substituted with
different halogens, hydroxyl group
and NH3 group and the bond
distance, bond angle and the
charge on the molecule is found
out. For calculating the mentioned
parameters Spartan `10 V1.1.0
have been used.
4.1.1 Bond Lengths
Bond length or bond distance is
the average distance between
nuclei of two bonded atoms in a
molecule.
Table 2: Bond length parameter
of Cisplatin and its substituent
In the above table the
values of bond angle for the
different substituted groups on the
platinum center of Cisplatin,
which is studied with hartree-Fock
set.
Substituent Bond Angle in Ao
Pt-
Substituted
N-H Pt-N O-H
-F 1.90 1.00 1.85 -
-Br 2.48 1.00 2.13 -
-I 2.70 1.01 2.10 -
-OH 2.10 1.01 1.98 0.958
-NH3 2.10 1.01 2.10
-Cl 2.63 1.08 2.12 -
Cisplatin
4.1.2 Bond Angle and
Electrostatic Charge
From the results obtained in the
table 2, it can be interpreted that
the change in the bond length due
to various substituent. The most
deviation from the original value
of bond length is observed with
iodine, this is due to the large size
of the iodine molecule
Table3:Hartree-Fockoptimizedbondanglesforcisplatin
BondAngles
N2H5H6
35.26
35.26
35.26
35.26
35.26
35.26
H4N2H5
109.47
109.47
107.95
109.47
109.47
109.47
N1H2H3
35.26
35.26
35.26
35.26
35.26
35.26
N1H1H3
35.26
35.26
35.26
35.26
35.26
35.26
N1PtN2
75.36
45
43.23
90
90
90
suPtN
90
90
85.57
90
90
90
su,Pt,su
90
90
95.36
90
90
90
Substitu
F
Cl
Br
I
OH
NH3
The results obtained from
the table 3 indicate that, the
various changes that occurs in the
bond angle due to substitution of
various group on the central metal
atom. The most deviated result
obtained is the substitution of
fluorine, due to its high
electronegativity the bond angle is
constrained. Another deviation
observed in the substitution of
Bromine, due to the large size of
bromine the bond angle changes.
From the table 4, the
results obtained showed
electrostatic charge which varies
according to the change in the
substituent group; with the
decrease in electronegativity on
the substituent group the positive
charge on the central atom
increase. Fluorine is the most
electronegative group; fluorine
substitution has lowest positive
charge on the central atom when
compared to the least negative
group Iodine; which shows
highest positive charge on the
central metal atom.
Fluorine is the most
electronegative atom; it pulls the
electron density from the adjacent
metal atom there by leaving least
positive charge on the central
metal atom when compared to the
lesser electronegative atom than
fluorine
Cisplatin
Table4.Hartree-FockStabalizedElectrostaticchargeoncisplatinanditssubstituents
N2
-2.46
-3.48
-3.88
-24.41
N1
-2.46
-3.48
-3.88
-24.41
Charge
Pt
49.66
52.44
53.39
312.26
Sub
-5.56
-13.14
-15.13
-148.2
Sub
-5.56
-13.14
-15.13
-148.2
Subs
F
Cl
Br
I
5. CONCLUSION:
From the Hartree-Fock and
molecular mechanics calculations
its is observed that there is a much
larger deviation in the iodine
substituted Cisplatin, this is
probably due to the larger size and
lower electronegativity of iodine
when compared to chlorine in the
original molecule. In the
calculation related to bond angle,
the bond angle increases with the
increase in the size of the
substituent group; in this very
particular case; the increase in
bond angle is subjected to increase
with electron donating group.
The study related to the
electrostatic charge; the charge on
the central atom increases with the
decrease in the electronegativity
and size of the substituent group,
fluorine which is the most
electronegative atom substituted
made the central atom positive by
drawing electron towards itself;
there by developing a positive
charge on the central atom
5.1 Note
The study done through this paper
is theoretical work. The affect of
the Cisplatin drug or its
substituent on the human body or
stimulated system is not known.
6. ACKNOWLEDGEMENTS:
I would like to thank Dr. Allan D.
Headley and for giving me this
opportunity to work on this
software and for their assistance.
7. REFERENCES:
Cisplatin
[1] Cornel Baltă, $icoleta G. Hădărugă1,
Carmen Manuela Plesa (Mitar), Daniel Ghibu,
Gabriela Garban, Zeno Garban, Daniel I.
Hădărugă (2012).Hematological properties of
cisplatin and its Ficaria verna Huds. extracts /
β-cyclodextrin complexes in rats, Journal of
Agroalimentary Processes and Technologies
2012, 18 (4), 356-359
[2] Irena Kostova,(2006), Platinium
complexes as anti cancer agents, Recent
patents on anti cancer drug discovery, 2006,
1, 1-22
[3] Rebecca A.Alderden, Matthew D.Hall, and
Trevor W.Hambley (2006), The discovery and
development of Cisplatin, Journal of Chemical
Education, 2006, Vol 83, No 5.
[4] P. J. Gee a & W. F. van Gunsteren,(2011)
Report on Carcinogens, National Toxicology
program 2011, Vol 12.
[5] Alderen RA, Hall MD, Hambley TW (2006),
Discovery and development of Cisplatin,
Journal of Chem Ed. Vol 83 (5) 728-724
[6] DF Long and AJ Repta (1981), Cisplatin:
Chemistry, distribution and
biotransformation 1981, Biopharmaceutics
and Drug dipostion, VOl 2, 1-16
[7] Wilson and Gisvold, Organic medicinal
and pharmaceutical chemistry, 12th
edition,
Philadelphia. PA 2004.
[8] Stephen Trzaska (2005); Cisplatin; C&EN
News Vol 83, 25
[9] Pruefer FG, Lizarraga F, Maldonado V,
Melendez-Zajgla J ( 2008). "Participation of
Omi Htra2 serine-protease activity in the
apoptosis induced by cisplatin on SW480
colon cancer cells". J Chemother 20 (3): 348–
54
_____________________________________
__________
COMPUTATIONAL STUDIES ON THE
ANTI- NEOPLASTIC AGENT
Cisplatin
“CISPLATIN” AND ITS SUBSTITUENT
USING SPARTAN `10
- Syed Zia ul Quasim, Dr. Allan D Headley
- Department of chemistry, Texas A&M University -
Commerce, Texas 2013 USA.

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Syed Zia-Spartan Modelling

  • 1. Cisplatin ABSTRACT: Since the discovery of anti cancer activity of Cisplatin, it has enjoyed a huge proclamation and clinical hit. In this report using Spartan `10 V1.1.0 Molecular mechanics and Hartee-Fock calculations have been performed using different substituent on the central Platinum atom, substituent like F, Cl, Br, I, NH2, OH are used for studying energy and geometrics. The parameters like bond length, bond angle, electrostatic charge, dipole moment, Energy have been compared. The deviation in the bond length from the original molecule is observed greatest with iodine; this might be due to the larger size. Further bond angle calculations have been performed; the most affected is the bromine substituted; this might be due to the higher electronegativity. The electrostatic charge studies showed that with the increase in charge of the substituent atom, the electro positive charge on the central metal atom kept increasing. Dipole moment calculations showed that, when –OH group –NH3group is substituted it displayed relatively lower dipole moment which interpreted the molecule is much more stable, than when iodine is substituted which has relatively a much larger dipole moment. INTRODUCTION: Cancer is one of the most common diseases in the world; it has also become the most important cause of deaths in recent years1 . The use of metals in curing diseases can be traced back almost 5000 years. Transitional metal complexes are nowadays used as alkylating agents in the treatment of cancer. The development of the coordinating chemistry has revolutionized and facilitated chemists using metals centers for synthesizing coordinating complex molecules as drugs, metal centers being positively charged are able to bind to the negatively charged biomolecules2 . Cisplatin is one those complex molecule which has a platinum center, it was only in mid 1960`s when anticancer activity of Cisplatin was discovered. Cisplatin is believed to exert its anticancer effect by interacting with DNA, inducing programmed cell death. Cisplatin and its analogues interacts with the purine base pairs in the DNA; forming DNA-Pt (NH3)2-DNA, which inhibits DNA replication and ultimate cell death3 . Cisplatin is a metallic coordinating complex, molecular formula is (NH3)2PtCl2. It has a molecular weight of 300gm/mol. It has square planar geometry. It is white or deep yellow to yellow- orange crystalline powder at room temperature4 . Fig 1: Structure of Cisplatin
  • 2. Cisplatin Cisplatin can be prepared by using Potassium tetracholoroplatinate(II), the first NH3 ligand can be added at any position the second one is added to cis or trans to the bound amine ligand5 . Further investigation with this drug is complicated mode of action of the drug.6 Cisplatin has –NH3 groups attached to the central Platinum metal atom, the bond distance from Pt-Cl measure 2.5A, where as the bond distance between Pt- NH3 is 2.1A. The electro negativity of Cl and N is 3.0, so the charge is symmetrically distributed, due to which the molecule is slight soluble in water. Table 1: Physicochemical properties of Cisplatin Property Data Molecular Formula H6Cl2N2Pt Molecular weight 300.1g/mol Physical State Crystalline powder Molecular Shape Square planar Solubility Slightly soluble in water, soluble in dimethylprimanide and N,N- dimethylfor mamide Density 3.74gm/m3 Stability Transforms to trans over time 2. MECHANISM OF ACTION: Cancer can be considered a failure of cell to undergo apoptosis. In norma cells, sensors to cell abnormalities lead to withdrawal of survival signals, there by leading to cell death7 . In Cisplatin, it induces cell death of cancer cell by interacting with the DNA synthesis. The platinum atom binds to the DNA base pairs; cross linking of the complex occurs when chloride ligand is displaced. By this way several cross linking occurs there by interfering with the cell division, which in turn activates apoptosis8-9 . 3. EXPERIMENTAL SECTION: 3.1 Computational Methods: The present study on the Cisplatin molecule is completely theoretical. Using Spartan `10 V1.1.0 the theoretical studies have been carried out on a high performance computer. The calculations that are carried out include Molecular mechanics and Hartree-Fock. The Equilibrium Geometry studied with Hartree- Fock is studied under 6-31G*. The other calculations include simpler findings like Bond Angle, Bond
  • 3. Cisplatin Length data and charges on the atoms are calculated. Further Calculations are done by changing the ligands on the central atom; atoms which are more electronegative and also less electronegative than the parent molecule have been studied, along with other ligands. 4. RESULTS AND DISCUSSION: Different forms of Cisplatin are formed by substituting the –Cl with different electron donating groups and electron withdrawing groups. The affect on the bond length and bond angle have been observed. Fig. 2. Cisplatin and other substituted forms of cisplatin 4.1 Molecular Mechanics The Cisplatin molecule which contains two chlorines, the chlorines are substituted with different halogens, hydroxyl group and NH3 group and the bond distance, bond angle and the charge on the molecule is found out. For calculating the mentioned parameters Spartan `10 V1.1.0 have been used. 4.1.1 Bond Lengths Bond length or bond distance is the average distance between nuclei of two bonded atoms in a molecule. Table 2: Bond length parameter of Cisplatin and its substituent In the above table the values of bond angle for the different substituted groups on the platinum center of Cisplatin, which is studied with hartree-Fock set. Substituent Bond Angle in Ao Pt- Substituted N-H Pt-N O-H -F 1.90 1.00 1.85 - -Br 2.48 1.00 2.13 - -I 2.70 1.01 2.10 - -OH 2.10 1.01 1.98 0.958 -NH3 2.10 1.01 2.10 -Cl 2.63 1.08 2.12 -
  • 4. Cisplatin 4.1.2 Bond Angle and Electrostatic Charge From the results obtained in the table 2, it can be interpreted that the change in the bond length due to various substituent. The most deviation from the original value of bond length is observed with iodine, this is due to the large size of the iodine molecule Table3:Hartree-Fockoptimizedbondanglesforcisplatin BondAngles N2H5H6 35.26 35.26 35.26 35.26 35.26 35.26 H4N2H5 109.47 109.47 107.95 109.47 109.47 109.47 N1H2H3 35.26 35.26 35.26 35.26 35.26 35.26 N1H1H3 35.26 35.26 35.26 35.26 35.26 35.26 N1PtN2 75.36 45 43.23 90 90 90 suPtN 90 90 85.57 90 90 90 su,Pt,su 90 90 95.36 90 90 90 Substitu F Cl Br I OH NH3 The results obtained from the table 3 indicate that, the various changes that occurs in the bond angle due to substitution of various group on the central metal atom. The most deviated result obtained is the substitution of fluorine, due to its high electronegativity the bond angle is constrained. Another deviation observed in the substitution of Bromine, due to the large size of bromine the bond angle changes. From the table 4, the results obtained showed electrostatic charge which varies according to the change in the substituent group; with the decrease in electronegativity on the substituent group the positive charge on the central atom increase. Fluorine is the most electronegative group; fluorine substitution has lowest positive charge on the central atom when compared to the least negative group Iodine; which shows highest positive charge on the central metal atom. Fluorine is the most electronegative atom; it pulls the electron density from the adjacent metal atom there by leaving least positive charge on the central metal atom when compared to the lesser electronegative atom than fluorine
  • 5. Cisplatin Table4.Hartree-FockStabalizedElectrostaticchargeoncisplatinanditssubstituents N2 -2.46 -3.48 -3.88 -24.41 N1 -2.46 -3.48 -3.88 -24.41 Charge Pt 49.66 52.44 53.39 312.26 Sub -5.56 -13.14 -15.13 -148.2 Sub -5.56 -13.14 -15.13 -148.2 Subs F Cl Br I 5. CONCLUSION: From the Hartree-Fock and molecular mechanics calculations its is observed that there is a much larger deviation in the iodine substituted Cisplatin, this is probably due to the larger size and lower electronegativity of iodine when compared to chlorine in the original molecule. In the calculation related to bond angle, the bond angle increases with the increase in the size of the substituent group; in this very particular case; the increase in bond angle is subjected to increase with electron donating group. The study related to the electrostatic charge; the charge on the central atom increases with the decrease in the electronegativity and size of the substituent group, fluorine which is the most electronegative atom substituted made the central atom positive by drawing electron towards itself; there by developing a positive charge on the central atom 5.1 Note The study done through this paper is theoretical work. The affect of the Cisplatin drug or its substituent on the human body or stimulated system is not known. 6. ACKNOWLEDGEMENTS: I would like to thank Dr. Allan D. Headley and for giving me this opportunity to work on this software and for their assistance. 7. REFERENCES:
  • 6. Cisplatin [1] Cornel Baltă, $icoleta G. Hădărugă1, Carmen Manuela Plesa (Mitar), Daniel Ghibu, Gabriela Garban, Zeno Garban, Daniel I. Hădărugă (2012).Hematological properties of cisplatin and its Ficaria verna Huds. extracts / β-cyclodextrin complexes in rats, Journal of Agroalimentary Processes and Technologies 2012, 18 (4), 356-359 [2] Irena Kostova,(2006), Platinium complexes as anti cancer agents, Recent patents on anti cancer drug discovery, 2006, 1, 1-22 [3] Rebecca A.Alderden, Matthew D.Hall, and Trevor W.Hambley (2006), The discovery and development of Cisplatin, Journal of Chemical Education, 2006, Vol 83, No 5. [4] P. J. Gee a & W. F. van Gunsteren,(2011) Report on Carcinogens, National Toxicology program 2011, Vol 12. [5] Alderen RA, Hall MD, Hambley TW (2006), Discovery and development of Cisplatin, Journal of Chem Ed. Vol 83 (5) 728-724 [6] DF Long and AJ Repta (1981), Cisplatin: Chemistry, distribution and biotransformation 1981, Biopharmaceutics and Drug dipostion, VOl 2, 1-16 [7] Wilson and Gisvold, Organic medicinal and pharmaceutical chemistry, 12th edition, Philadelphia. PA 2004. [8] Stephen Trzaska (2005); Cisplatin; C&EN News Vol 83, 25 [9] Pruefer FG, Lizarraga F, Maldonado V, Melendez-Zajgla J ( 2008). "Participation of Omi Htra2 serine-protease activity in the apoptosis induced by cisplatin on SW480 colon cancer cells". J Chemother 20 (3): 348– 54 _____________________________________ __________ COMPUTATIONAL STUDIES ON THE ANTI- NEOPLASTIC AGENT
  • 7. Cisplatin “CISPLATIN” AND ITS SUBSTITUENT USING SPARTAN `10 - Syed Zia ul Quasim, Dr. Allan D Headley - Department of chemistry, Texas A&M University - Commerce, Texas 2013 USA.