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CRISPR-cas9 on eradicating pests
Teoh zhi lingYong shu wenLiew chen hau ASwint
To study CRISPR–Cas9 gene drive targeting doublesex
causes complete population suppression in caged
Anopheles gambiae mosquitoes
Malaria PATHOLOGY
● Sporogony and sporozoite production in
mosquito.
● A female anopheline mosquito injects
the “sporozoites” while taking the blood
meal
● Parasite multiplies in RBC, RBC burst
and spread through bloodstream.
● Symptoms: Fever (>38’C), shivering,
headaches, vomiting, diarrhoea, muscle
& joint pains.
*Parasite matures in the liver*
What makes male and Female A.giambae different?..
● Clustered Regularly Interspaced
Short Palindromic Repeats
● Cas 9 (produced by bacteria) is
used to cut the targeted site by
gRNA.
● Low cost-gene editor
● Anopheles gambiae encodes two alternatively spliced transcripts, dsx-female and dsx-male.
● The female transcript contains exon 5 which is a highly conserved sequence in all anopheles
mosquitoes.
● The male specific isoform contains an additional domain at the C terminus that is transcribed
as a noncoding 3’ untranslated region in females
Germline promoter
Reporter gene
Left recombinase
target site
Right recombinase target site
Transcription unit
U6 promoter
Guide
RNA
Disrupted
exon 5
Recombinase-mediated
cassette exchange:
● Replace 3xP3::GFP
transcription unit
with a dsxFCRISPRh
gene drive
3xP3::GFP transcription unit
Flanking
sequence
Integrase
target site
HDR knockout construct:
● Recognize exon 5 &
corresponding target
locus.
● Induce DSB
GFP gene
knock in
1. Incorporate
dsxFCRISPRh gene
drive into target
locus.
2. Transformant
confirmed by
swapping of GFP
with RFP.
Experimental outline
1. Cas 9 with designed
gRNA cleave intron
4-exon 5.
2. Insert eGFP by HDR
3. Disruption of exon 5
4. Confirmed by PCR &
gene sequencing
Cross
breeding
1. Knock-in of
eGRP gene is
identified by
PCR.
1. Heterozygous
individuals crossed
with heterozygous.
2. Produce WT,
homozygous of
having eGRP, and
heterozygous.
Recombinase-
mediated casette
exchange (RMCE)
Selection
Is dsx a suitable
target for a gene
drive?
1
2
3
4
Results
Reproductive phenotype
of mutant dsxF gene Morphology of dsxf -/-
Female mosquito carried clasper
(male specific characteristics),
resulting an insersex mosquito
Could not feed on blood and failed
to produce eggsFemale mosquito with dsxF-/- has
no ability to produce larval progeny.
Assessment of dsx gene drive in caged insects
It is shown that
heterozygous male has
95.9% ± 1.1%
heterozygous female has
99.4% ± 0.5%of
transmission rate of dsxF
CRISPR to the progeny.
Gene drive dsxFCRISPRh
Anopheles mosquitoes with boosted
immune Y-drive
Current Development
● High inheritance bias.
● Heterozygous are fully
fertile.
● Homozygous females are
sterile and unable to bite.
● No evidence for
nuclease-resistant
functional variants.
● Suppressed
Plasmodium parasites.
● Trait found in ±90% of
the 1st generation,
remained through 10
generations.
● Targets haplo-sufficient
fertility genes
● Introduce sex distorter
on the Y chromosome in
the form of nuclease.
● Shreds X chromosomes.
Challenges and
Limitations
competition for resources or
mating success
Environmental concerns
by society
difficulties in sustaining
controlled practices
development of resistance
to nuclease-based gene
drive
● Female mosquitoes genetically engineered with
dsxFCRISPRh gene drive
● Disabled blood meal in female mosquito progeny
➢ Progeny key phenotype: Clasper
● dsxF preferred method as high inheritance rate, fully
fertile heterozygotes, homozygous females are sterile
● Other developments include boosted immunity
mosquitoes, and “y-drive”
● Challenges include competition for resources and
mating success, controlled practices unsustainable,
resistance to nuclease-based gene drive, and
complexity of transmission dynamics
CONCLUSIONS
References
1. Kyrou, Kyros, Hammond, Andrew, Galizi, Roberto, Kranjc, Nace, Burt, Austin,
Beaghton, Andrea, Nolan, Tony, Crisanti, Andrea 2018, “ A CRISPR–Cas9 gene
drive targeting doublesex causes complete population suppression in caged
Anopheles gambiae mosquitoes”, Nature Biotechnology, vol 36, no. 11,
viewed on 20 August 2020,
<https://www.researchgate.net/publication/327848989_A_CRISPR-Cas9_gen
e_drive_targeting_doublesex_causes_complete_population_suppression_in_
caged_Anopheles_gambiae_mosquitoes>
2. National Institue of Health 2017, “Engineering malaria resistance in
mosquitoes”, NIH Research Matters. Viewed on 24 September 2020,
<https://www.nih.gov/news-events/nih-research-matters/engineering-malari
a-resistance-mosquitoes>

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CRISPR-Cas 9 on eradication pests

  • 1. CRISPR-cas9 on eradicating pests Teoh zhi lingYong shu wenLiew chen hau ASwint To study CRISPR–Cas9 gene drive targeting doublesex causes complete population suppression in caged Anopheles gambiae mosquitoes
  • 2. Malaria PATHOLOGY ● Sporogony and sporozoite production in mosquito. ● A female anopheline mosquito injects the “sporozoites” while taking the blood meal ● Parasite multiplies in RBC, RBC burst and spread through bloodstream. ● Symptoms: Fever (>38’C), shivering, headaches, vomiting, diarrhoea, muscle & joint pains. *Parasite matures in the liver*
  • 3. What makes male and Female A.giambae different?.. ● Clustered Regularly Interspaced Short Palindromic Repeats ● Cas 9 (produced by bacteria) is used to cut the targeted site by gRNA. ● Low cost-gene editor ● Anopheles gambiae encodes two alternatively spliced transcripts, dsx-female and dsx-male. ● The female transcript contains exon 5 which is a highly conserved sequence in all anopheles mosquitoes. ● The male specific isoform contains an additional domain at the C terminus that is transcribed as a noncoding 3’ untranslated region in females
  • 4. Germline promoter Reporter gene Left recombinase target site Right recombinase target site Transcription unit U6 promoter Guide RNA Disrupted exon 5 Recombinase-mediated cassette exchange: ● Replace 3xP3::GFP transcription unit with a dsxFCRISPRh gene drive 3xP3::GFP transcription unit Flanking sequence Integrase target site HDR knockout construct: ● Recognize exon 5 & corresponding target locus. ● Induce DSB
  • 5. GFP gene knock in 1. Incorporate dsxFCRISPRh gene drive into target locus. 2. Transformant confirmed by swapping of GFP with RFP. Experimental outline 1. Cas 9 with designed gRNA cleave intron 4-exon 5. 2. Insert eGFP by HDR 3. Disruption of exon 5 4. Confirmed by PCR & gene sequencing Cross breeding 1. Knock-in of eGRP gene is identified by PCR. 1. Heterozygous individuals crossed with heterozygous. 2. Produce WT, homozygous of having eGRP, and heterozygous. Recombinase- mediated casette exchange (RMCE) Selection Is dsx a suitable target for a gene drive? 1 2 3 4
  • 6. Results Reproductive phenotype of mutant dsxF gene Morphology of dsxf -/- Female mosquito carried clasper (male specific characteristics), resulting an insersex mosquito Could not feed on blood and failed to produce eggsFemale mosquito with dsxF-/- has no ability to produce larval progeny.
  • 7. Assessment of dsx gene drive in caged insects It is shown that heterozygous male has 95.9% ± 1.1% heterozygous female has 99.4% ± 0.5%of transmission rate of dsxF CRISPR to the progeny.
  • 8. Gene drive dsxFCRISPRh Anopheles mosquitoes with boosted immune Y-drive Current Development ● High inheritance bias. ● Heterozygous are fully fertile. ● Homozygous females are sterile and unable to bite. ● No evidence for nuclease-resistant functional variants. ● Suppressed Plasmodium parasites. ● Trait found in ±90% of the 1st generation, remained through 10 generations. ● Targets haplo-sufficient fertility genes ● Introduce sex distorter on the Y chromosome in the form of nuclease. ● Shreds X chromosomes.
  • 9. Challenges and Limitations competition for resources or mating success Environmental concerns by society difficulties in sustaining controlled practices development of resistance to nuclease-based gene drive
  • 10. ● Female mosquitoes genetically engineered with dsxFCRISPRh gene drive ● Disabled blood meal in female mosquito progeny ➢ Progeny key phenotype: Clasper ● dsxF preferred method as high inheritance rate, fully fertile heterozygotes, homozygous females are sterile ● Other developments include boosted immunity mosquitoes, and “y-drive” ● Challenges include competition for resources and mating success, controlled practices unsustainable, resistance to nuclease-based gene drive, and complexity of transmission dynamics CONCLUSIONS
  • 11. References 1. Kyrou, Kyros, Hammond, Andrew, Galizi, Roberto, Kranjc, Nace, Burt, Austin, Beaghton, Andrea, Nolan, Tony, Crisanti, Andrea 2018, “ A CRISPR–Cas9 gene drive targeting doublesex causes complete population suppression in caged Anopheles gambiae mosquitoes”, Nature Biotechnology, vol 36, no. 11, viewed on 20 August 2020, <https://www.researchgate.net/publication/327848989_A_CRISPR-Cas9_gen e_drive_targeting_doublesex_causes_complete_population_suppression_in_ caged_Anopheles_gambiae_mosquitoes> 2. National Institue of Health 2017, “Engineering malaria resistance in mosquitoes”, NIH Research Matters. Viewed on 24 September 2020, <https://www.nih.gov/news-events/nih-research-matters/engineering-malari a-resistance-mosquitoes>