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Peter McQuilton
@drosophilic/@biosharing
The BioSharing portal - linking databases, data
standards and policies in the life, biomedical and
environmental sciences
RDA 9th Plenary, IGAD meeting, 5-7 April 2017, Barcelona, Spain
• A web-based, curated and searchable portal that monitors the
development and evolution of standards, their use in
databases and the adoption of both in data policies,
to inform and educate
Complex and evolving landscape
Data policies by
funders, journals and
other organizations
Databases, tools
and services
Content standards
Formats Terminologies Guidelines
Models/Formats = Conceptual
model, conceptual schema,
exchange formats
Terminologies = Controlled
vocabularies, taxonomies,
thesauri, ontologies etc.
Guidelines = Minimum information
reporting requirements, checklists
Content standards
Data policies by
funders, journals and
other organizations
Databases, tools
and services
Formats Terminologies Guidelines
By grass-roots
groups, e.g.:
By standard
organizations, e.g.:
Complex and evolving landscape
Helping users
make the right
decision
My funder’s data policy recommends the use of established
standards, but which are widely endorsed and applicable to
my crop data?
We need a standard for sharing farm
data, what’s out there and who
should we talk to?
I have some old rice genomic data in
format X, which is now deprecated;
what format has replaced X?
What databases are heavily supported
in the community that we should
recommend to our authors?
Indicators to describe the status of
standards and databases
Ready for use, implementation, or recommendation
In development
Status uncertain
Deprecated as subsumed or superseded
Manually curated and verified
by the community behind each
resource
Track evolution
Track evolution
Data Policy
List of their
recommended
databases and standards
Visualizing the relationships between
data…
Data Policy
…to inform and educate on existing and
new resources
Standard developing groups, incl.:Journals/publishers, incl.:
BioTools
Cross-links and data exchange, incl.:
Societies and organisations, incl.: Institutional RDM services, incl.:
Projects/programmes,
incl.:
Working with the community/adopters
WG
output
available
now
Acknowledgements

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The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences.

  • 1. Peter McQuilton @drosophilic/@biosharing The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences RDA 9th Plenary, IGAD meeting, 5-7 April 2017, Barcelona, Spain
  • 2. • A web-based, curated and searchable portal that monitors the development and evolution of standards, their use in databases and the adoption of both in data policies, to inform and educate
  • 3. Complex and evolving landscape Data policies by funders, journals and other organizations Databases, tools and services Content standards Formats Terminologies Guidelines Models/Formats = Conceptual model, conceptual schema, exchange formats Terminologies = Controlled vocabularies, taxonomies, thesauri, ontologies etc. Guidelines = Minimum information reporting requirements, checklists
  • 4. Content standards Data policies by funders, journals and other organizations Databases, tools and services Formats Terminologies Guidelines By grass-roots groups, e.g.: By standard organizations, e.g.: Complex and evolving landscape
  • 5. Helping users make the right decision My funder’s data policy recommends the use of established standards, but which are widely endorsed and applicable to my crop data? We need a standard for sharing farm data, what’s out there and who should we talk to? I have some old rice genomic data in format X, which is now deprecated; what format has replaced X? What databases are heavily supported in the community that we should recommend to our authors?
  • 6.
  • 7.
  • 8.
  • 9. Indicators to describe the status of standards and databases Ready for use, implementation, or recommendation In development Status uncertain Deprecated as subsumed or superseded Manually curated and verified by the community behind each resource
  • 10.
  • 13. Data Policy List of their recommended databases and standards Visualizing the relationships between data…
  • 14. Data Policy …to inform and educate on existing and new resources
  • 15. Standard developing groups, incl.:Journals/publishers, incl.: BioTools Cross-links and data exchange, incl.: Societies and organisations, incl.: Institutional RDM services, incl.: Projects/programmes, incl.: Working with the community/adopters WG output available now