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Introduction
Wild-type
Methods
•Plaques on Plate are bull’s eye, 2-3mm after 24hrs
•Electron microscopy- pure population
•Size of Genome: about 70,000 bp
•Gel electrophoresis: cluster assignment H
•Future Directions: Kill curve determination
Results
Discussion
Adsorption of the phagedegradative enzymes or
contraction of the sheath & tail @ cell wall 
Enzymes degrade bacterial DNA,  genetic
recombination  lytic or a lysogenic cycle
Michaelangelo temperate phage
model: Mycobacterium smegmatis (M. smeg)
We hypothesize that a bacteriophage can
be isolated and purified from a soil
sample; that it can be characterized into a
cluster; and that infectivity can be
determined in a kill curve
soil sample enrichment
Purification: streak test,
and titer assay.
Acknowledgments: Sea faculty Sea Teaching
Assistants, Lee Graham, The Hatfull laboratory At
Pittsburgh, HHMI, Department of Biological
Sciences
Figure 1) Agar plate with plaques in M.smeg
bacterial lawn. Shown is a Bull’s eye
morphology. Note the clear sterile center and
the turbid outer rings
Figure 2) a typical titer assay with plaques in
the M.smeg bacterial lawn. Note the density
of the plaques- web pattern
Figure 4) Michaelangelo bacteriophage
electron microscopy image. At the tip of the
tail there is a clover shaped attachment site.
Figure 3) Michaelangelo electron microscopy.
Note the curved tail characteristic of
siphoviridae, icosahedral capsid and 2.5:1
Head:tail ratio
Figure 5) Restriction digest. Bands left to
right: 1-kb ladder, undigested DNA, BamH1,
Cla1, EcoR1, HaeIII, HindIII. Bam H1 did not
cut, while HaeII, EcoR1 and HindIII cut. In
particular, HaeIII cut into such small
fragments it ran off the gel. Cla1 had the
clearest bands
Stock solution: Medium and high titer lysates
DNA extraction: alcohol precipitation
Restriction digest and gel eletrophoresis
M. Smeg colony formation
% survival and Kill curve
claI      
Distance 
traveled 
(cm)
log 
fragment 
length
Fragment 
length (bd)
estimate of 
genome size 
(bp)
1.5 4.05 11220 79452
1.6 4.01 10232 
1.6 4.01 10232 
1.8 3.9 7943 
2.2 3.8 6309 
2.5 3.7 5011 
2.7 3.7 5011 
2.9 3.6 3981 
3 3.6 3981 
3.3 3.5 3162 
3.4 3.4 2511 
3.5 3.4 2511 
3.6 3.4 2511 
3.7 3.3 1995 
4 3.2 1584 
4.5 3.1 1258 
Bull’s eye morphology
Web pattern Gel electrophoresis
Siphoviridae
Attachment site

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SEA Poster!!!

  • 1. Introduction Wild-type Methods •Plaques on Plate are bull’s eye, 2-3mm after 24hrs •Electron microscopy- pure population •Size of Genome: about 70,000 bp •Gel electrophoresis: cluster assignment H •Future Directions: Kill curve determination Results Discussion Adsorption of the phagedegradative enzymes or contraction of the sheath & tail @ cell wall  Enzymes degrade bacterial DNA,  genetic recombination  lytic or a lysogenic cycle Michaelangelo temperate phage model: Mycobacterium smegmatis (M. smeg) We hypothesize that a bacteriophage can be isolated and purified from a soil sample; that it can be characterized into a cluster; and that infectivity can be determined in a kill curve soil sample enrichment Purification: streak test, and titer assay. Acknowledgments: Sea faculty Sea Teaching Assistants, Lee Graham, The Hatfull laboratory At Pittsburgh, HHMI, Department of Biological Sciences Figure 1) Agar plate with plaques in M.smeg bacterial lawn. Shown is a Bull’s eye morphology. Note the clear sterile center and the turbid outer rings Figure 2) a typical titer assay with plaques in the M.smeg bacterial lawn. Note the density of the plaques- web pattern Figure 4) Michaelangelo bacteriophage electron microscopy image. At the tip of the tail there is a clover shaped attachment site. Figure 3) Michaelangelo electron microscopy. Note the curved tail characteristic of siphoviridae, icosahedral capsid and 2.5:1 Head:tail ratio Figure 5) Restriction digest. Bands left to right: 1-kb ladder, undigested DNA, BamH1, Cla1, EcoR1, HaeIII, HindIII. Bam H1 did not cut, while HaeII, EcoR1 and HindIII cut. In particular, HaeIII cut into such small fragments it ran off the gel. Cla1 had the clearest bands Stock solution: Medium and high titer lysates DNA extraction: alcohol precipitation Restriction digest and gel eletrophoresis M. Smeg colony formation % survival and Kill curve claI       Distance  traveled  (cm) log  fragment  length Fragment  length (bd) estimate of  genome size  (bp) 1.5 4.05 11220 79452 1.6 4.01 10232  1.6 4.01 10232  1.8 3.9 7943  2.2 3.8 6309  2.5 3.7 5011  2.7 3.7 5011  2.9 3.6 3981  3 3.6 3981  3.3 3.5 3162  3.4 3.4 2511  3.5 3.4 2511  3.6 3.4 2511  3.7 3.3 1995  4 3.2 1584  4.5 3.1 1258  Bull’s eye morphology Web pattern Gel electrophoresis Siphoviridae Attachment site