SlideShare a Scribd company logo
1 of 92
Bacteriology
Basics
Morphology, Classification, Staining
Methods
Dr.T.V.Rao MD
Introduction:
Dr.T
.V.Rao MD 2
• Microorganisms – several classes of living
beings
• Based on the organization of their cellular
structures, all living cells can be divided into
two groups: eukaryotic and prokaryotic
– Eukaryotic cell types - Animals, plants, fungi,
protozoans, and algae
– Prokaryotic cell types - bacteria & blue green
algae
Antioni van Leeuwenhoek
s
• Leeuwenhoek is called
"the inventor of the
microscope"
• Created a “simple”
microscope that could
magnify to about 275x, and
published drawings of
microorganisms in 1683
• Could reach magnification
of over 200x with simple
ground lenses
Dr.T
.V.Rao MD 3
How a Microscope Works with..
Ocular Lens
(Magnifies Image)
Objective Lens
(Gathers Light,
Magnifies
And Focuses Image
Inside Body Tube)
Body Tube
(Image Focuses)
•Bending Light: The objective (bottom) convex lens
magnifies and focuses (bends) the image inside the
body tube and the ocular convex (top) lens of a
microscope magnifies it (again). 4
Dr.T
.V.Rao
MD
The Light Microscope
• many types
–bright-field microscope
–dark-field microscope
–phase-contrast microscope
–fluorescence microscopes
• compound microscopes
–image formed by action of 2 lenses 5
Dr.T
.V.Rao
MD
The Compound Microscope
• The Optical System
–Objective Lens: the lens closest to the
specimen; usually several objectives are
mounted on a revolving nosepiece.
• Parafocal: when the microscope is focused with one
objective in place, another objective can be rotated
into place and the specimen remains very nearly in
correct focus.
–Eyepiece or Ocular Lens: the lens closest to the
eye.
• Monocular: a microscope having only one eyepiece
• Binocular: a microscope having two eyepieces.
6
Dr.T
.V.Rao
MD
Phase Contrast Microscopy
• light rays through objects of different
change in phase, not intensity
• special ring-shaped condenser diaphragm
• special glass disc in objective
– change phase differences to intensity
differences
– can view transparent
objects as dark on light
background (without staining)
• Right; human brain glial
cells Dr.T
.V.Rao MD 7
The Bright-Field Microscope
• Produces a dark image against a
brighter background
• Has several objective lenses
–par focal microscopes remain in focus
when objectives are changed
• total magnification
– product of the magnifications of the
ocular lens and the objective lens 8
Dr.T
.V.Rao
MD
Fluorescence Microscopy
• Illuminate specimen with UV visible fluorescence
(filter removes harmful UV)
• View auto-fluorescent objects (e.g., chloroplasts)
• Stain with specific fluorescent dyes, which absorb in
region 230-350 nm & emit orange, yellow or
greenish light
• Images appear coloured against a dark background
Dr.T
.V.Rao MD 9
Schematic of typical animal (eukaryotic) cell, showing subcellular
components.
Dr.T
.V.Rao MD 10
(5) rough endoplasmic reticulum (ER)
Organelles: (1) nucleolus (2) nucleus (3) ribosome
(6) Golgi apparatus
(4) vesicle
(7) Cytoskeleton
(8) smooth ER
(11) cytoplasm
(9) mitochondria
(12) lysosome
(10) vacuole
(13) centrioles
Background Information
Prokaryotes
Dr.T
.V.Rao MD 11
• Prokaryotes represent two domains,
bacteria and archaea.
• Archaea live in Earth’s extreme
environments.
• Bacteria are the most abundant and
diversified organisms on Earth.
Dr.T
.V.Rao MD 12
Eukaryotes have organelles
• Much larger; more complex than prokaryotes
• Processes compartmentalized into organelles
– Nucleus
– Protein synthesis (ribosomes, RER, Golgi)
– Mitochondria; chloroplasts
– Lysosomes
– Plasma membranes have different modifications
– Cytoskeleton
Differences between prokaryotic & eukaryotic cells
Character Prokaryotes Eukaryotes
Nucleus Nuclear
membrane
Absent Present
Nucleolus Absent Present
Chromosome One circular One or more paired
and linear
Cell division Binary fission Mitosis
Cytoplasmic
membrane
Structure and
Composition
fluid phospholipid
bilayer, lacks sterols
fluid phospholipid
bilayer containing
sterols
Function Incapable of
endocytosis
(phagocytosis and
pinocytosis) and
exD
or
.
T
c.
V
y.
R
ta
oo
sM
iD
s
Capable of
endocytosis and
exocytosis
13
Differences between prokaryotic & eukaryotic
cells
Character Prokaryotes Eukaryotes
Cytoplasm Mitochondria Absent Present
Lysosomes Absent Present
Golgi apparatus Absent Present
Endoplasmic
reticulum
Absent Present
Vacuoles Absent Present
Ribosomes 70 S
Dr.T.V.Rao MD
80 S
14
Differences between prokaryotic &
eukaryotic cells
Character Prokaryotes Eukaryotes
Cell Wall Present Animals & Protozoans –
Absent
Plants, Fungi & Algae -
Present
Composition Peptidoglycan –
complex
carbohydrate
Cellulose or chitin
Locomotor
organelles
Flagella
Dr.T.V.Rao MD
Flagella/ Cilia
15
Prokaryotic Cells
• Much smaller (microns) and more simple
than eukaryotes
• Prokaryotes are molecules surrounded by
a membrane and cell wall.
• They lack a true nucleus and don’t have
membrane bound organelles like
mitochondria, etc.
• Large surface-to-volume ratio : nutrients
can easily and rapidly reach any part of
the cells interior Dr.T
.V.Rao MD 16
Size of Bacteria
• Unit of measurement in
bacteriology is the micron
(micrometre, µm)
• Bacteria of medical importance
–0.2 – 1.5 µm in diameter
–3 – 5 µm in length
Dr.T
.V.Rao MD 17
18
Eukaryotic cell Prokaryotic cell
Gram +
Gram -
(e.g. animal)
Nucleoid
Rough endoplasmic
reticulum
Nucleus
Cell membrane
Cytoplasm
Mitochondria
Flagellum
Cell wall
Outer membrane
Granule
Cell wall
Pili
Capsule
Cell (inner) membrane
D
Rr
.
T
i.
bV
.
oR
a
so
oM
mD
es
Shapes of Bacteria
• Cocci – spherical/ oval shaped
• Bacilli – rod shaped
• Vibrios – comma shaped
• Spirilla – rigid spiral forms
major groups
• Spirochetes – flexible spiral forms
• Actinomycetes – branching filamentous
bacteria
• Mycoplasmas – lack cell wall
Dr.T
.V.Rao MD 19
Bacteria Have One of Three Cellular
Shapes
• Rods (bacilli)
• Coccoid-Shaped
• Spirilla
Dr.T
.V.Rao MD 20
Arrangement of bacteria: Cocci
Sarcina – groups of eight
Cocci in chain - Streptococci
Coccus
Cocci in pair – Diplococcus
Tetrad – groups of four
Cocci in cluster - Staphylococci
Dr.T
.V.Rao MD 21
Reproduction
• Prokaryotic cell division is
binary fission.
– Single DNA molecule that
first replicates.
– Attaches each copy to a
different part of the cell
membrane.
– Cell begins to pull apart.
– Following cytokinesis, there
are then two cells of
identical genetic
composition.
Dr.T
.V.Rao MD 22
Arrangement of bacteria: Bacilli
Dr.T
.V.Rao MD 23
Other shapes of bacteria
Comma shaped
Dr.T
.V.Rao MD 24
Spirochetes
Spirilla
Anatomy of a Bacterial Cell
Dr.T
.V.Rao MD 25
Dr.T
.V.Rao MD 26
Anatomy of A Bacterial Cell
• Outer layer – two components:
1. Rigid cell wall
2. Cytoplasmic (Cell/ Plasma) membrane –
present beneath cell wall
• Cytoplasm – cytoplasmic inclusions,
ribosomes, mesosomes and nucleus
• Additional structures – plasmid, slime
layer, capsule, flagella, fimbriae (pili),
spores
Structure of Bacteria
• All cells have 3 main components:
– DNA (‘nucleoid”)
• genetic instructions
– surrounding membrane (“cytoplasmic
membrane”)
• limits access to the cell’s interior
– cytoplasm, between the DNA and the
membrane
• where all metabolic reactions occur
• especially protein synthesis, which occurs
on the ribosomes
• Bacteria also often have these features:
– cell wall
• resists osmotic pressure
– flagella
• movement
– pili
• attachment
– capsule
• protection and biofilms Dr.T
.V.Rao MD 27
Typical shapes of bacteria
28
Dr.T
.V.Rao MD
Most bacteria retain a particular shape; a few
are pleiomorphic
Typical prokaryotic structures
29
Dr.T
.V.Rao MD
Working from the outside in…
Characteristic grouping (or not grouping)
30
Dr.T
.V.Rao MD
The Cell Envelope
Gram Positive Gram Negative
31
Dr.T
.V.Rao MD
GRAM POSITIVE
Lipoteichoic acid Peptidoglycan-teichoic acid
GRAM NEGATIVE
Cytoplasm
Cytoplasm
Cytoplasmic membrane
Inner (cytoplasmic) membrane
Outer Membrane
Lipopolysaccharide
Porin
Braun lipoprotein
32
Dr.T
.V.Rao MD
Gram-positive and gram-negative bacteria
Difference Between
Gram-Negative
and Gram-Positive Bacteria
Gram-Negative Bacteria Gram-Positive Bacteria
More complex cell wall. Simple cell wall.
Thin peptidoglycan celll wall layer. Thick peptidoglycan celll wall layer.
Outer lipopolysaccharide wall layer. No outer lipopolysaccharide wall layer.
Retain safranin. Retain crystal violet/iodine.
Appear pink/red.
Dr.T.V.R
Appear blue/purple.
ao MD 34
Cell Envelope
• The cell envelope is all the
layers from the cell
membrane outward,
including the cell wall, the
periplasmic space, the outer
membrane, and the capsule.
– All free-living bacteria
have a cell wall
– periplasmic space and
outer membrane are
found in Gram-negatives
– the capsule is only found
in some strains
Dr.T
.V.Rao MD 35
Structure & Function
of Cell Components
CELL WALL
• Outermost layer, encloses cytoplasm
1. Confers shape and rigidity
2. 10 - 25 nm thick
1. Composed of complex polysaccharides
(peptidoglycan/ mucopeptide) - formed by N
acetyl glucosamine (NAG) & N acetyl muramic
acid (NAM) alternating in chains,
held by peptide chains.
Dr.T
.V.Rao MD 37
Dr.T
.V.Rao MD 38
Cell Wall
• Cell wall –
4. Carries bacterial antigens – important in
virulence & immunity
5. Chemical nature of the cell wall helps to divide
bacteria into two broad groups – Gram positive
& Gram negative
6. Gram +ve bacteria have simpler chemical nature
than Gram –ve bacteria.
7. Several antibiotics may interfere with cell wall
synthesis e.g. Penicillin, Cephalosporins
Transport Across the Cell Membrane
• Basic rule: things spontaneously
move from high concentration
to low concentration (downhill).
This process is called diffusion.
– Getting many molecules into the
cell is simply a matter of opening
up a protein channel of the proper
size and shape. The molecules
then move into the cell by
diffusing down the concentration
gradient. Passive transport, or
facilitated diffusion.
• To get things to move from low
to high (uphill), you need to add
energy: the molecules must be
pumped into the cell. Pumps
are driven by ATP energy.
Active transport. Dr.T
.V.Rao MD 39
Outer Membrane
Dr.T
.V.Rao MD 40
Gram negative bacteria
• major permeability barrier
• space between inner and outer
membrane
–Periplasmic space
store degradative enzymes
• Gram positive bacteria
• no Periplasmic space
Gram positive cell wall
The Gram-positive cell wall
Dr.T
.V.Rao MD 41
is composed of a thick, multilayered
peptidoglycan sheath outside of the cytoplasmic membrane. Teichoic
acids are linked to and embedded in the peptidoglycan, and
lipoteichoic acids extend into the cytoplasmic membrane
Gram negative cell wall
The Gram-negative cell wall is composed of an outer membrane
linked to thin, mainly single-layered peptidoglycan by lipoproteins.
The peptidoglycan is located within the periplasmic space that is
created between the outer and inner membranes. The outer
membrane includes porins, which allow the passage of small
hydrophilic molecules across the membrane, and
lipopolysaccharide molecules that extend into extracellular space.
Dr.T
.V.Rao MD 42
Cell Wall
Dr.T
.V.Rao MD 43
Dr.T
.V.Rao MD 44
Summary of the differences between
Gram positive & Gram negative bacteria
Property of bacteria Gram Positive Gram Negative
Thickness of wall 20-80 nm 10 nm
Number of layers in wall 1 2
Peptidoglycan content >50% 10-20%
Teichoic acid in wall + -
Lipid & lipoprotein content 0-3% 58%
Protein content 0% 9%
Lipopolysaccharide 0 13%
Sensitive to penicillin Yes Less sensitive
Digested by lysozyme Yes Weakly
Dr.T
.V.Rao MD 45
Cytoplasmic (Plasma) membrane
• Thin layer 5-10 nm, separates cell
wall from cytoplasm
• Acts as a semipermeable
membrane: controls the inflow and
outflow of metabolites
• Composed of lipoproteins with small
amounts of carbohydrates
Other Cytoplasmic Components
as
e
• Ribosomes – protein synthesis
• Mesosomes –
1. Multilaminated structures formed
invaginations of plasma membran
2. Principal sites of respiratory enzymes
3. Coordinate nuclear & cytoplasmic division during
binary fission
4. More prominent in Gram +ve bacteria
• Intracytoplasmic inclusions – reserve of
energy & phosphate for cell metabolism e.g.
Metachromatic granules in diphtheria bacilli
Dr.T
.V.Rao MD 46
Nucleus
nded DNA.
• No nucleolus
• No nuclear membrane
• Genome –
–single, circular double stra
–Haploid
–Divides by binary fission
Dr.T
.V.Rao MD 47
Additional Organelles
1. Plasmid –
– Extra nuclear genetic elements consisting
of DNA
– Transmitted to daughter cells during
binary fission
– May be transferred from one bacterium
to another
– Not essential for life of the cell
– Confer certain properties e.g. drug
resistance, toxiD
cr.iTt
.Vy
.Rao MD 48
Additional Organelles
2. Capsule & Slime layer –
– Viscous layer secreted around the cell
wall.
– Polysaccharide / polypeptide in nature
a) Capsule – sharply defined
structure, antigenic in nature
• Protects bacteria from lytic
enzymes
• Inhibits phagocytosis
• Stained by negative staining
using India Ink
• Can be demonstrated by
Quellung reaction (capsule
swelling reaction) Dr.T
.V.Rao MD 49
50
Dr.T
.V.Rao MD
Additional Organelles
3. Flagella –
– Long (3 to 12 µm), filamentous surface
appendages
– Organs of locomotion
– Chemically, composed of proteins called flagellins
– The number and distribution of flagella on the
bacterial surface are characteristic for a given
species - hence are useful in identifying and
classifying bacteria
– Flagella may serve as antigenic determinants
(e.g. the H antigens of Gram-negative enteric
bacteria)
– Presence shown by motility e.g. hanging drop
preparation
Types of flagellar arrangement
Polar/ Monotrichous – single
flagellum at one pole
Lophotrichous – tuft of flagella at one
pole
Amphitrichous – flagella at both
poles
Peritrichous – flagella all over
Amphilophotrichous – tuft of flagella
at both ends
51
Dr.T
.V.Rao MD
Peritrichous
(or amphi, or
monotrichous
lophotrichous
Cocci do not have flagella
52
Dr.T
.V.Rao MD
FLAGELLA
• Some bacteria are motile
• Locomotory organelles- flagella
• Taste environment
• Respond to food/poison
– chemo taxis
53
Dr.T
.V.Rao MD
• Flagella
– embedded in cell membrane
– project as strand
– Flagellin (protein) subunits
– move cell by propeller like action
54
Dr.T
.V.Rao MD
55
Dr.T
.V.Rao MD
Additional Organelles
4. Fimbriae/ Pili –
– Thin, hairlike appendages on the surface of many Gram-
negative bacteria
– 10-20µ long, acts as organs of adhesion (attachment) - allowing
bacteria to colonize environmental surfaces or cells and resist
flushing
– Made up of proteins called pilins.
– Pili can be of two types –
 Common pili – short & abundant
 Sex pili - small number (one to six), very long pili, helps
in conjugation (process of transfer of DNA)
http://student.ccbcmd.edu/courses/bio141/lecguide/unit1/prostruct/yespili.html
http://student.ccbcmd.edu/courses/bio141/lecguide/unit1/prostruct/nopili.html
Additional Organelles
5. Spores –
– Highly resistant resting
stages formed during
adverse environment
(depletion of nutrients)
– Formed inside the
parent cell, hence called
Endospores
– Very resistant to heat,
radiation and drying and
can remain dormant for
hundreds of years.
– Formed by bacteria like
Clostridia, bacillus
56
Dr.T
.V.Rao MD
The cycle of spore formation and germination
At the beginning of spore formation, a septum forms,
separating the nascent spore from the rest of the cell and all of
the genetic material of the cell is copied into the newly-forming
cell. The spore contents are dehydrated and the protective
outer coatings are laid down. Once the spore is matured it is
relleased from the cell. On germination, the spore contents
rehydrate and a new bacterium emerges and multiplies.
57
Dr.T
.V.Rao MD
Shape & position of bacterial spore
Oval central
Spherical central
Oval sub terminal
Oval sub terminal
Oval terminal
Spherical terminal
Free spore
Non bulging
Bulging
58
Dr.T
.V.Rao MD
Spores
• Some bacteria can form very tough
spores, which are metabolically
inactive and can survive a long time
under very harsh conditions.
–Allegedly, some bacterial
spores that were embedded
in amber or salt deposits for
25 million years have been
revived. These experiments
are viewed skeptically by
many scientists.
59
Dr.T
.V.Rao MD
60
Dr.T
.V.Rao MD
Spores
• Spores can also survive very high or low temperatures and
high UV radiation for extended periods. This makes them
difficult to kill during sterilization.
• Anthrax
• Spores are produced only by a few genera in the Firmicutes:
• Bacillus species including anthracis (anthrax) and cereus
(endotoxin causes ~5% of food poisoning)
• Clostridium species including tetani (tetanus), perfringens
(gangrene), and botulinum (botulism: food poisoning from
improperly canned food)
61
Dr.T
.V.Rao MD
Pleomorphic & Involution forms
• Pleomorphism – great variation in shape
& size of individual cells e.g. Proteus
species
• Involution forms – swollen & aberrant
forms in ageing cultures, especially in the
presence of high salt concentration e.g.
plague bacillus
• Cause – defective cell wall synthesis
62
Dr.T
.V.Rao MD
Bacterial Taxonomy
• Includes three components:
1.Classification : orderly
arrangement
2.Identification of an unknown
unit
3.Nomenclature : naming the
units
63
Dr.T
.V.Rao MD
Bacterial Taxonomy: Classification
• Orderly arrangement :
Division – Class – Order – Family –
Species
Kingdom –
Tribe – Genus –
 Phylogenetic classification – represents a branching
tree like arrangement. One characteristic being used
for division at each branch or level
 Molecular or Genetic classification – based on the
degree of genetic relatedness of different organisms
 Intraspecies classification – based on biochemical
properties (biotypes), antigenic features (serotypes),
bacteriophage susceptibility (phage types)
Bacterial Taxonomy: Nomenclature
• Two kinds of name are given to
bacteria
–Casual / common name – for local use,
varies from country to country
e.g. “typhoid bacillus”
–Scientific / International Name – same
all over world, consists of two words (in
Italics)
e.g. Salmonella typhi, Staphylococcus
Dr.T
.V.Rao MD 64
Microscopy helps to Measure
and Observe the Bacteria
• Measurement
– Microorganisms are very small
– Use metric system
– Metre (m) : standard unit
– Micrometre ( m) = 1 x10-6 m
– Nanometre (nm) = 1 x10-9 m
– Angstrom (Å) = 1 x10-10 m
Dr.T
.V.Rao MD 65
Why we should be Stain Bacteria
Bacteria have nearly the same refractive
index as water, therefore, when they are
observed under a microscope they are
opaque or nearly invisible to the naked
eye.
Different types of staining methods are
used to make the cells and their internal
structures more visible under the light
microscope. 66
Dr.T
.V.Rao MD
Dr.T
.V.Rao MD 67
What is a Stain
• A stain is a substance that adheres to a cell, giving
the cell color.
• The presence of color gives the cells significant
contrast so are much more visible.
• Different stains have different affinities for
different organisms, or different parts of
organisms
• They are used to differentiate different types of
organisms or to view specific parts of organisms
Dr.T
.V.Rao MD 68
Simple staining
• Methylene blue, Basic fuchsin
• Provide the color contrast but impart the
same color to all the organisms in a smear
• Loffler's ethylene blue: Sat. solution of M. blue
in alcohol - 30mlKoH, 0.01% in water -
100mlDissolve the dye in water, filter. For
smear: stain for 3’. For section: stain
Simple Staining Easier to Perform
But has Limitations
• Simple easy to use;
single staining agent
used; using basic and
acid dyes.
• Features of dyes: give
coloring of
microorganisms; bind
specifically to various
cell structures
Dr.T
.V.Rao MD 69
Differential Stains
Differential Stains use two or more stains
and allow the cells to be categorized into
various groups or types.
Both techniques allow the observation
of cell morphology, or shape, but
differential staining usually provides
more information about the
characteristics of the cell wall
(Thickness). 70
Dr.T
.V.Rao MD
Gram staining
• Named after Hans
Christian Gram,
differentiates
between Gram-
positive purple and
Gram-negative pink
stains and is used to
identify certain
pathogens.
Dr.T
.V.Rao MD 71
Dr.T
.V.Rao MD 72
Gram staining - Principles
• Gram staining is used to determine gram status to
classify bacteria broadly. It is based on the composition
of their cell wall. Gram staining uses crystal violet to
stain cell walls, iodine as a mordant, and a fuchsin or
safranin counterstain to mark all bacteria. Gram status
is important in medicine; the presence or absence of a
cell wall will change the bacterium's susceptibility to
some antibiotics.
• Gram-positive bacteria stain dark blue or violet. Their
cell wall is typically rich with peptidoglycan and lacks
the secondary membrane and lipopolysaccharide layer
found in Gram-negative bacteria
Gram Staining Steps
Dr.T
.V.Rao MD 73
1. Crystal violet acts as the primary stain. Crystal violet may also
be used as a simple stain because it dyes the cell wall of any
bacteria.
2. Gram’s iodine acts as a mordant (Helps to fix the primary
dye to the cell wall).
3. Decolorizer is used next to remove the primary stain (crystal
violet) from Gram Negative bacteria (those with LPS imbedded
in their cell walls). Decolorizer is composed of an organic
solvent, such as, acetone or ethanol or a combination of both.)
4. Finally, a counter stain (Safranin), is applied to stain those cells
(Gram Negative) that have lost the primary stain as a result of
decolorization
Structure and Reactivity to Gram
Staining.
Dr.T
.V.Rao MD 74
Dr.T
.V.Rao MD 75
Gm+ve cocci & Gm-ve bacilli
Dr.T
.V.Rao MD 76
GRAM-POSITIVE BACTERIA
• GRAM-POSITIVE BACTERIA
are characterized by having
as part of their cell wall
structure peptidoglycan as
well as polysaccharides
and/or teichoic acids. The
peptidoglycans which are
sometimes also called
murein are heteropolymers
of glycan strands, which are
cross-linked through short
peptides.
Dr.T
.V.Rao MD 77
Dr.T
.V.Rao MD 78
What are Gram Negative Bacteria
• Gram-negative bacteria are those bacteria that
do not retain crystal violet dye in the Gram
staining protocol. In a Gram stain test, a counter
stain (commonly safranin) is added after the
crystal violet, coloring all Gram-negative bacteria
with a red or pink color. The test itself is useful in
classifying two distinct types of bacteria based on
the structural differences of their cell walls. On
the other hand, Gram-positive bacteria will retain
the crystal violet dye when washed in a
decolorizing solution.
Gram negative bacteria
• On most Gram-stained
preparations, Gram-
negative organisms will
appear red or pink because
they are counterstained.
Due to presence of higher
lipid content, after alcohol-
treatment, the porosity of
the cell wall increases,
hence the CVI complex
(Crystal violet -Iodine) can
pass through. Thus, the
primary stain is not
retained. 79
Dr.T
.V.Rao MD
Gram Negative Bacteria
• Also, in contrast to most
Gram-positive bacteria,
Gram-negative bacteria
have only a few layers
of peptidoglycan and a
secondary cell
membrane made
primarily of
lipopolysaccharide
Dr.T
.V.Rao MD 80
ACID FAST STAINING
Dr.T
.V.Rao MD 81
Acid-Fast Stain
• Acid-fast cells contain a
large amount of lipids and
waxes in their cell walls
– primarily mycolic acid
• Acid fast bacteria are
usually members of the
genus Mycobacterium or
Nocardia
– Therefore, this stain is
important to identify
Mycobacterium or Nocardia
Dr.T
.V.Rao MD 82
Ziehl-Neelsen stain
83
• Ziehl-Neelsen staining is used to stain
species of Mycobacterium tuberculosis
that do not stain with the standard
laboratory staining procedures like Gram
staining.
• The stains used are the red colored
Carbol fuchsin that stains the bacteria
and a counter stain like Methylene blue
or Malachite gree
Dn
r.T
.V
..Rao MD
Acid-Fast Organisms
Dr.T
.V.Rao MD 84
• Primary stain binds cell wall mycolic acids
• Intense decolorization does not release
primary stain from the cell wall of AFB
• Color of AFB-based on primary stain
• Counterstain provides contrasting
background
AFB Staining Methods
• Zeihl
Neelsen’s-hot
stain
• Kinyoun’s-cold
stain
• Modifications
Dr.T
.V.Rao MD 85
Dr.T
.V.Rao MD 86
ALBERT’S STAINING FOR
C.diptheria
Diphtheria is Serious Disease
When you suspect Diphtheria
• In all cases of suspected
cases of Diphtheria, stain
one of the smears with
Gram stain
• If Gram stained smear
shows morphology
suggestive of C.diptheria,
proceed to do Albert
staining which
demonstrates the presence
or absence of
metachromatic granules.
Dr.T
.V.Rao MD 87
Dr.T
.V.Rao MD 88
Appearance of C.diptheria
• C.diptheria are thin Gram positive bacilli, straight
or slightly curved and often enlarged (clubbing) at
one or both ends and are arranged at acute
angles giving shapes of Chinese letters or V shape
which is characteristic of these organisms (Fig 1).
Present in the body of the bacillus are numerous
metachromatic granules which give the bacillus
beaded or barred appearance. These granules are
best demonstrated by Albert’s stain.
Dr.T
.V.Rao MD 89
Albert staining
• Albert stain I
• Toluidine blue 0.15 gm
Malachite green 0.20
gm
Glacial acetic acid 1.0
ml
Alcohol(95%) 2.0 ml
Distilled water 100 ml
• Albert stain II
• Iodine 2.0 gm
Potassium
iodide 3.0 gm
Distilled water
300 ml
Dr.T
.V.Rao MD 90
Albert staining Procedure
• Cover the heat-fixed smear with Albert
stain I. Let it stand for two minutes.
• Wash with water.
• Cover the smear with Albert stain II.
Let it stand for two minutes.
• Wash with water, blot dry and
examine.
•
How the C.diptheria appear
• To demonstrate
metachromatic
granules in
C.diptheria. These
granules appear
bluish black whereas
the body of bacilli
appear green or
bluish green.
• Dr.T
.V.Rao MD 91
Dr.T
.V.Rao MD 92
• Programme created by Dr.T
.V
.Rao MD
from several resources in world wide
web, and Thankful for Dr. Ekta
www.medmicrobes from basic
programme on Bacterial cell
• Email
• doctortvrao@gmail.com

More Related Content

Similar to bactrialmorphology-131109235439-phpapp01.pptx

Bio chapter 1.pdf
Bio chapter 1.pdfBio chapter 1.pdf
Bio chapter 1.pdfNiveetha1
 
IB biol 1.2.pptx
IB biol 1.2.pptxIB biol 1.2.pptx
IB biol 1.2.pptxChenyiSu2
 
L-5 Fundamental unit of life.pptx
L-5 Fundamental unit of life.pptxL-5 Fundamental unit of life.pptx
L-5 Fundamental unit of life.pptxPrisha20
 
2 Biology 1_2_07 Pro vs Eu Cells.ppt
2 Biology 1_2_07 Pro vs Eu Cells.ppt2 Biology 1_2_07 Pro vs Eu Cells.ppt
2 Biology 1_2_07 Pro vs Eu Cells.pptCHELCEECENARIO
 
2.2 prokaryotic cells
2.2 prokaryotic cells2.2 prokaryotic cells
2.2 prokaryotic cellscartlidge
 
bacterial morphology and classification
bacterial morphology and classificationbacterial morphology and classification
bacterial morphology and classificationAshish Jawarkar
 
grade 8 Cell – the basic unit of life.pptx
grade 8 Cell – the basic unit of life.pptxgrade 8 Cell – the basic unit of life.pptx
grade 8 Cell – the basic unit of life.pptxSalaiKulamamaniR
 
Cell structure and functions
Cell structure and functionsCell structure and functions
Cell structure and functionsAnushka Ninama
 
3.0 Cell Structure and function (2).pptx
3.0 Cell Structure and function (2).pptx3.0 Cell Structure and function (2).pptx
3.0 Cell Structure and function (2).pptxstephenopokuasante
 
prokaryotic and eukaryotic cell
prokaryotic and eukaryotic cellprokaryotic and eukaryotic cell
prokaryotic and eukaryotic cellAditi Chandrakar
 
Cell: it’s structure and functions
Cell: it’s structure and functionsCell: it’s structure and functions
Cell: it’s structure and functionsdigvijay3344
 
Cell structure I 2011 [Compatibility Mode].pdf
Cell structure  I  2011 [Compatibility Mode].pdfCell structure  I  2011 [Compatibility Mode].pdf
Cell structure I 2011 [Compatibility Mode].pdfPaulTinarwo1
 
Cells (Eukaryote & Prokaryote, Parts & Functions)
Cells (Eukaryote & Prokaryote, Parts & Functions)Cells (Eukaryote & Prokaryote, Parts & Functions)
Cells (Eukaryote & Prokaryote, Parts & Functions)Dorothy Claire
 

Similar to bactrialmorphology-131109235439-phpapp01.pptx (20)

Cell : The Unit of Life
Cell : The Unit of LifeCell : The Unit of Life
Cell : The Unit of Life
 
Bio chapter 1.pdf
Bio chapter 1.pdfBio chapter 1.pdf
Bio chapter 1.pdf
 
IB biol 1.2.pptx
IB biol 1.2.pptxIB biol 1.2.pptx
IB biol 1.2.pptx
 
Cells
CellsCells
Cells
 
L-5 Fundamental unit of life.pptx
L-5 Fundamental unit of life.pptxL-5 Fundamental unit of life.pptx
L-5 Fundamental unit of life.pptx
 
2 Biology 1_2_07 Pro vs Eu Cells.ppt
2 Biology 1_2_07 Pro vs Eu Cells.ppt2 Biology 1_2_07 Pro vs Eu Cells.ppt
2 Biology 1_2_07 Pro vs Eu Cells.ppt
 
2.2 prokaryotic cells
2.2 prokaryotic cells2.2 prokaryotic cells
2.2 prokaryotic cells
 
Cells structure
Cells structureCells structure
Cells structure
 
bacterial morphology and classification
bacterial morphology and classificationbacterial morphology and classification
bacterial morphology and classification
 
bacteriology (1).pptx
bacteriology (1).pptxbacteriology (1).pptx
bacteriology (1).pptx
 
grade 8 Cell – the basic unit of life.pptx
grade 8 Cell – the basic unit of life.pptxgrade 8 Cell – the basic unit of life.pptx
grade 8 Cell – the basic unit of life.pptx
 
Cell structure and functions
Cell structure and functionsCell structure and functions
Cell structure and functions
 
3.0 Cell Structure and function (2).pptx
3.0 Cell Structure and function (2).pptx3.0 Cell Structure and function (2).pptx
3.0 Cell Structure and function (2).pptx
 
prokaryotic and eukaryotic cell
prokaryotic and eukaryotic cellprokaryotic and eukaryotic cell
prokaryotic and eukaryotic cell
 
Cell biology
Cell biologyCell biology
Cell biology
 
Cell: it’s structure and functions
Cell: it’s structure and functionsCell: it’s structure and functions
Cell: it’s structure and functions
 
Introduction to cell
Introduction to cellIntroduction to cell
Introduction to cell
 
Cell structure I 2011 [Compatibility Mode].pdf
Cell structure  I  2011 [Compatibility Mode].pdfCell structure  I  2011 [Compatibility Mode].pdf
Cell structure I 2011 [Compatibility Mode].pdf
 
1 cell fernando
1 cell fernando1 cell fernando
1 cell fernando
 
Cells (Eukaryote & Prokaryote, Parts & Functions)
Cells (Eukaryote & Prokaryote, Parts & Functions)Cells (Eukaryote & Prokaryote, Parts & Functions)
Cells (Eukaryote & Prokaryote, Parts & Functions)
 

More from Meenachi Ct

streptococcuspneumoniae-121126055108-phpapp01 (1).pptx
streptococcuspneumoniae-121126055108-phpapp01 (1).pptxstreptococcuspneumoniae-121126055108-phpapp01 (1).pptx
streptococcuspneumoniae-121126055108-phpapp01 (1).pptxMeenachi Ct
 
hepatitis B & D.pptx
hepatitis B & D.pptxhepatitis B & D.pptx
hepatitis B & D.pptxMeenachi Ct
 
Marie Rathe Sterilization presentation.pptx
Marie Rathe Sterilization presentation.pptxMarie Rathe Sterilization presentation.pptx
Marie Rathe Sterilization presentation.pptxMeenachi Ct
 
culturemethodsppt-110227185402-phpapp02.pptx
culturemethodsppt-110227185402-phpapp02.pptxculturemethodsppt-110227185402-phpapp02.pptx
culturemethodsppt-110227185402-phpapp02.pptxMeenachi Ct
 
Pneumococci.pptx
Pneumococci.pptxPneumococci.pptx
Pneumococci.pptxMeenachi Ct
 
Streptococci.ppt
Streptococci.pptStreptococci.ppt
Streptococci.pptMeenachi Ct
 
Streptococci.pptx
Streptococci.pptxStreptococci.pptx
Streptococci.pptxMeenachi Ct
 
vitamins-template.pptx
vitamins-template.pptxvitamins-template.pptx
vitamins-template.pptxMeenachi Ct
 
DisinfectionSterilizationSlides.ppt
DisinfectionSterilizationSlides.pptDisinfectionSterilizationSlides.ppt
DisinfectionSterilizationSlides.pptMeenachi Ct
 
chp 1 combined.ppt
chp 1 combined.pptchp 1 combined.ppt
chp 1 combined.pptMeenachi Ct
 
Biomedical waste handling rules.pptx
Biomedical waste handling rules.pptxBiomedical waste handling rules.pptx
Biomedical waste handling rules.pptxMeenachi Ct
 
RT-PCR Principle-ABCF 2016-Roger.pdf
RT-PCR Principle-ABCF 2016-Roger.pdfRT-PCR Principle-ABCF 2016-Roger.pdf
RT-PCR Principle-ABCF 2016-Roger.pdfMeenachi Ct
 

More from Meenachi Ct (14)

streptococcuspneumoniae-121126055108-phpapp01 (1).pptx
streptococcuspneumoniae-121126055108-phpapp01 (1).pptxstreptococcuspneumoniae-121126055108-phpapp01 (1).pptx
streptococcuspneumoniae-121126055108-phpapp01 (1).pptx
 
hepatitis B & D.pptx
hepatitis B & D.pptxhepatitis B & D.pptx
hepatitis B & D.pptx
 
Marie Rathe Sterilization presentation.pptx
Marie Rathe Sterilization presentation.pptxMarie Rathe Sterilization presentation.pptx
Marie Rathe Sterilization presentation.pptx
 
culturemethodsppt-110227185402-phpapp02.pptx
culturemethodsppt-110227185402-phpapp02.pptxculturemethodsppt-110227185402-phpapp02.pptx
culturemethodsppt-110227185402-phpapp02.pptx
 
Pneumococci.pptx
Pneumococci.pptxPneumococci.pptx
Pneumococci.pptx
 
Salmonella.ppt
Salmonella.pptSalmonella.ppt
Salmonella.ppt
 
Streptococci.ppt
Streptococci.pptStreptococci.ppt
Streptococci.ppt
 
Streptococci.pptx
Streptococci.pptxStreptococci.pptx
Streptococci.pptx
 
vitamins-template.pptx
vitamins-template.pptxvitamins-template.pptx
vitamins-template.pptx
 
DisinfectionSterilizationSlides.ppt
DisinfectionSterilizationSlides.pptDisinfectionSterilizationSlides.ppt
DisinfectionSterilizationSlides.ppt
 
chp 1 combined.ppt
chp 1 combined.pptchp 1 combined.ppt
chp 1 combined.ppt
 
chap 4 ppt.ppt
chap 4  ppt.pptchap 4  ppt.ppt
chap 4 ppt.ppt
 
Biomedical waste handling rules.pptx
Biomedical waste handling rules.pptxBiomedical waste handling rules.pptx
Biomedical waste handling rules.pptx
 
RT-PCR Principle-ABCF 2016-Roger.pdf
RT-PCR Principle-ABCF 2016-Roger.pdfRT-PCR Principle-ABCF 2016-Roger.pdf
RT-PCR Principle-ABCF 2016-Roger.pdf
 

Recently uploaded

Organic Name Reactions for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions  for the students and aspirants of Chemistry12th.pptxOrganic Name Reactions  for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions for the students and aspirants of Chemistry12th.pptxVS Mahajan Coaching Centre
 
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...M56BOOKSTORE PRODUCT/SERVICE
 
BASLIQ CURRENT LOOKBOOK LOOKBOOK(1) (1).pdf
BASLIQ CURRENT LOOKBOOK  LOOKBOOK(1) (1).pdfBASLIQ CURRENT LOOKBOOK  LOOKBOOK(1) (1).pdf
BASLIQ CURRENT LOOKBOOK LOOKBOOK(1) (1).pdfSoniaTolstoy
 
Crayon Activity Handout For the Crayon A
Crayon Activity Handout For the Crayon ACrayon Activity Handout For the Crayon A
Crayon Activity Handout For the Crayon AUnboundStockton
 
Call Girls in Dwarka Mor Delhi Contact Us 9654467111
Call Girls in Dwarka Mor Delhi Contact Us 9654467111Call Girls in Dwarka Mor Delhi Contact Us 9654467111
Call Girls in Dwarka Mor Delhi Contact Us 9654467111Sapana Sha
 
Accessible design: Minimum effort, maximum impact
Accessible design: Minimum effort, maximum impactAccessible design: Minimum effort, maximum impact
Accessible design: Minimum effort, maximum impactdawncurless
 
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPT
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPTECONOMIC CONTEXT - LONG FORM TV DRAMA - PPT
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPTiammrhaywood
 
Presiding Officer Training module 2024 lok sabha elections
Presiding Officer Training module 2024 lok sabha electionsPresiding Officer Training module 2024 lok sabha elections
Presiding Officer Training module 2024 lok sabha electionsanshu789521
 
How to Make a Pirate ship Primary Education.pptx
How to Make a Pirate ship Primary Education.pptxHow to Make a Pirate ship Primary Education.pptx
How to Make a Pirate ship Primary Education.pptxmanuelaromero2013
 
The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13Steve Thomason
 
microwave assisted reaction. General introduction
microwave assisted reaction. General introductionmicrowave assisted reaction. General introduction
microwave assisted reaction. General introductionMaksud Ahmed
 
How to Configure Email Server in Odoo 17
How to Configure Email Server in Odoo 17How to Configure Email Server in Odoo 17
How to Configure Email Server in Odoo 17Celine George
 
Employee wellbeing at the workplace.pptx
Employee wellbeing at the workplace.pptxEmployee wellbeing at the workplace.pptx
Employee wellbeing at the workplace.pptxNirmalaLoungPoorunde1
 
Mastering the Unannounced Regulatory Inspection
Mastering the Unannounced Regulatory InspectionMastering the Unannounced Regulatory Inspection
Mastering the Unannounced Regulatory InspectionSafetyChain Software
 
Interactive Powerpoint_How to Master effective communication
Interactive Powerpoint_How to Master effective communicationInteractive Powerpoint_How to Master effective communication
Interactive Powerpoint_How to Master effective communicationnomboosow
 
SOCIAL AND HISTORICAL CONTEXT - LFTVD.pptx
SOCIAL AND HISTORICAL CONTEXT - LFTVD.pptxSOCIAL AND HISTORICAL CONTEXT - LFTVD.pptx
SOCIAL AND HISTORICAL CONTEXT - LFTVD.pptxiammrhaywood
 

Recently uploaded (20)

Organic Name Reactions for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions  for the students and aspirants of Chemistry12th.pptxOrganic Name Reactions  for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions for the students and aspirants of Chemistry12th.pptx
 
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...
 
BASLIQ CURRENT LOOKBOOK LOOKBOOK(1) (1).pdf
BASLIQ CURRENT LOOKBOOK  LOOKBOOK(1) (1).pdfBASLIQ CURRENT LOOKBOOK  LOOKBOOK(1) (1).pdf
BASLIQ CURRENT LOOKBOOK LOOKBOOK(1) (1).pdf
 
Crayon Activity Handout For the Crayon A
Crayon Activity Handout For the Crayon ACrayon Activity Handout For the Crayon A
Crayon Activity Handout For the Crayon A
 
Call Girls in Dwarka Mor Delhi Contact Us 9654467111
Call Girls in Dwarka Mor Delhi Contact Us 9654467111Call Girls in Dwarka Mor Delhi Contact Us 9654467111
Call Girls in Dwarka Mor Delhi Contact Us 9654467111
 
9953330565 Low Rate Call Girls In Rohini Delhi NCR
9953330565 Low Rate Call Girls In Rohini  Delhi NCR9953330565 Low Rate Call Girls In Rohini  Delhi NCR
9953330565 Low Rate Call Girls In Rohini Delhi NCR
 
Accessible design: Minimum effort, maximum impact
Accessible design: Minimum effort, maximum impactAccessible design: Minimum effort, maximum impact
Accessible design: Minimum effort, maximum impact
 
Model Call Girl in Bikash Puri Delhi reach out to us at 🔝9953056974🔝
Model Call Girl in Bikash Puri  Delhi reach out to us at 🔝9953056974🔝Model Call Girl in Bikash Puri  Delhi reach out to us at 🔝9953056974🔝
Model Call Girl in Bikash Puri Delhi reach out to us at 🔝9953056974🔝
 
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPT
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPTECONOMIC CONTEXT - LONG FORM TV DRAMA - PPT
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPT
 
Staff of Color (SOC) Retention Efforts DDSD
Staff of Color (SOC) Retention Efforts DDSDStaff of Color (SOC) Retention Efforts DDSD
Staff of Color (SOC) Retention Efforts DDSD
 
Presiding Officer Training module 2024 lok sabha elections
Presiding Officer Training module 2024 lok sabha electionsPresiding Officer Training module 2024 lok sabha elections
Presiding Officer Training module 2024 lok sabha elections
 
How to Make a Pirate ship Primary Education.pptx
How to Make a Pirate ship Primary Education.pptxHow to Make a Pirate ship Primary Education.pptx
How to Make a Pirate ship Primary Education.pptx
 
The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13
 
microwave assisted reaction. General introduction
microwave assisted reaction. General introductionmicrowave assisted reaction. General introduction
microwave assisted reaction. General introduction
 
How to Configure Email Server in Odoo 17
How to Configure Email Server in Odoo 17How to Configure Email Server in Odoo 17
How to Configure Email Server in Odoo 17
 
Employee wellbeing at the workplace.pptx
Employee wellbeing at the workplace.pptxEmployee wellbeing at the workplace.pptx
Employee wellbeing at the workplace.pptx
 
Código Creativo y Arte de Software | Unidad 1
Código Creativo y Arte de Software | Unidad 1Código Creativo y Arte de Software | Unidad 1
Código Creativo y Arte de Software | Unidad 1
 
Mastering the Unannounced Regulatory Inspection
Mastering the Unannounced Regulatory InspectionMastering the Unannounced Regulatory Inspection
Mastering the Unannounced Regulatory Inspection
 
Interactive Powerpoint_How to Master effective communication
Interactive Powerpoint_How to Master effective communicationInteractive Powerpoint_How to Master effective communication
Interactive Powerpoint_How to Master effective communication
 
SOCIAL AND HISTORICAL CONTEXT - LFTVD.pptx
SOCIAL AND HISTORICAL CONTEXT - LFTVD.pptxSOCIAL AND HISTORICAL CONTEXT - LFTVD.pptx
SOCIAL AND HISTORICAL CONTEXT - LFTVD.pptx
 

bactrialmorphology-131109235439-phpapp01.pptx

  • 2. Introduction: Dr.T .V.Rao MD 2 • Microorganisms – several classes of living beings • Based on the organization of their cellular structures, all living cells can be divided into two groups: eukaryotic and prokaryotic – Eukaryotic cell types - Animals, plants, fungi, protozoans, and algae – Prokaryotic cell types - bacteria & blue green algae
  • 3. Antioni van Leeuwenhoek s • Leeuwenhoek is called "the inventor of the microscope" • Created a “simple” microscope that could magnify to about 275x, and published drawings of microorganisms in 1683 • Could reach magnification of over 200x with simple ground lenses Dr.T .V.Rao MD 3
  • 4. How a Microscope Works with.. Ocular Lens (Magnifies Image) Objective Lens (Gathers Light, Magnifies And Focuses Image Inside Body Tube) Body Tube (Image Focuses) •Bending Light: The objective (bottom) convex lens magnifies and focuses (bends) the image inside the body tube and the ocular convex (top) lens of a microscope magnifies it (again). 4 Dr.T .V.Rao MD
  • 5. The Light Microscope • many types –bright-field microscope –dark-field microscope –phase-contrast microscope –fluorescence microscopes • compound microscopes –image formed by action of 2 lenses 5 Dr.T .V.Rao MD
  • 6. The Compound Microscope • The Optical System –Objective Lens: the lens closest to the specimen; usually several objectives are mounted on a revolving nosepiece. • Parafocal: when the microscope is focused with one objective in place, another objective can be rotated into place and the specimen remains very nearly in correct focus. –Eyepiece or Ocular Lens: the lens closest to the eye. • Monocular: a microscope having only one eyepiece • Binocular: a microscope having two eyepieces. 6 Dr.T .V.Rao MD
  • 7. Phase Contrast Microscopy • light rays through objects of different change in phase, not intensity • special ring-shaped condenser diaphragm • special glass disc in objective – change phase differences to intensity differences – can view transparent objects as dark on light background (without staining) • Right; human brain glial cells Dr.T .V.Rao MD 7
  • 8. The Bright-Field Microscope • Produces a dark image against a brighter background • Has several objective lenses –par focal microscopes remain in focus when objectives are changed • total magnification – product of the magnifications of the ocular lens and the objective lens 8 Dr.T .V.Rao MD
  • 9. Fluorescence Microscopy • Illuminate specimen with UV visible fluorescence (filter removes harmful UV) • View auto-fluorescent objects (e.g., chloroplasts) • Stain with specific fluorescent dyes, which absorb in region 230-350 nm & emit orange, yellow or greenish light • Images appear coloured against a dark background Dr.T .V.Rao MD 9
  • 10. Schematic of typical animal (eukaryotic) cell, showing subcellular components. Dr.T .V.Rao MD 10 (5) rough endoplasmic reticulum (ER) Organelles: (1) nucleolus (2) nucleus (3) ribosome (6) Golgi apparatus (4) vesicle (7) Cytoskeleton (8) smooth ER (11) cytoplasm (9) mitochondria (12) lysosome (10) vacuole (13) centrioles
  • 11. Background Information Prokaryotes Dr.T .V.Rao MD 11 • Prokaryotes represent two domains, bacteria and archaea. • Archaea live in Earth’s extreme environments. • Bacteria are the most abundant and diversified organisms on Earth.
  • 12. Dr.T .V.Rao MD 12 Eukaryotes have organelles • Much larger; more complex than prokaryotes • Processes compartmentalized into organelles – Nucleus – Protein synthesis (ribosomes, RER, Golgi) – Mitochondria; chloroplasts – Lysosomes – Plasma membranes have different modifications – Cytoskeleton
  • 13. Differences between prokaryotic & eukaryotic cells Character Prokaryotes Eukaryotes Nucleus Nuclear membrane Absent Present Nucleolus Absent Present Chromosome One circular One or more paired and linear Cell division Binary fission Mitosis Cytoplasmic membrane Structure and Composition fluid phospholipid bilayer, lacks sterols fluid phospholipid bilayer containing sterols Function Incapable of endocytosis (phagocytosis and pinocytosis) and exD or . T c. V y. R ta oo sM iD s Capable of endocytosis and exocytosis 13
  • 14. Differences between prokaryotic & eukaryotic cells Character Prokaryotes Eukaryotes Cytoplasm Mitochondria Absent Present Lysosomes Absent Present Golgi apparatus Absent Present Endoplasmic reticulum Absent Present Vacuoles Absent Present Ribosomes 70 S Dr.T.V.Rao MD 80 S 14
  • 15. Differences between prokaryotic & eukaryotic cells Character Prokaryotes Eukaryotes Cell Wall Present Animals & Protozoans – Absent Plants, Fungi & Algae - Present Composition Peptidoglycan – complex carbohydrate Cellulose or chitin Locomotor organelles Flagella Dr.T.V.Rao MD Flagella/ Cilia 15
  • 16. Prokaryotic Cells • Much smaller (microns) and more simple than eukaryotes • Prokaryotes are molecules surrounded by a membrane and cell wall. • They lack a true nucleus and don’t have membrane bound organelles like mitochondria, etc. • Large surface-to-volume ratio : nutrients can easily and rapidly reach any part of the cells interior Dr.T .V.Rao MD 16
  • 17. Size of Bacteria • Unit of measurement in bacteriology is the micron (micrometre, µm) • Bacteria of medical importance –0.2 – 1.5 µm in diameter –3 – 5 µm in length Dr.T .V.Rao MD 17
  • 18. 18 Eukaryotic cell Prokaryotic cell Gram + Gram - (e.g. animal) Nucleoid Rough endoplasmic reticulum Nucleus Cell membrane Cytoplasm Mitochondria Flagellum Cell wall Outer membrane Granule Cell wall Pili Capsule Cell (inner) membrane D Rr . T i. bV . oR a so oM mD es
  • 19. Shapes of Bacteria • Cocci – spherical/ oval shaped • Bacilli – rod shaped • Vibrios – comma shaped • Spirilla – rigid spiral forms major groups • Spirochetes – flexible spiral forms • Actinomycetes – branching filamentous bacteria • Mycoplasmas – lack cell wall Dr.T .V.Rao MD 19
  • 20. Bacteria Have One of Three Cellular Shapes • Rods (bacilli) • Coccoid-Shaped • Spirilla Dr.T .V.Rao MD 20
  • 21. Arrangement of bacteria: Cocci Sarcina – groups of eight Cocci in chain - Streptococci Coccus Cocci in pair – Diplococcus Tetrad – groups of four Cocci in cluster - Staphylococci Dr.T .V.Rao MD 21
  • 22. Reproduction • Prokaryotic cell division is binary fission. – Single DNA molecule that first replicates. – Attaches each copy to a different part of the cell membrane. – Cell begins to pull apart. – Following cytokinesis, there are then two cells of identical genetic composition. Dr.T .V.Rao MD 22
  • 23. Arrangement of bacteria: Bacilli Dr.T .V.Rao MD 23
  • 24. Other shapes of bacteria Comma shaped Dr.T .V.Rao MD 24 Spirochetes Spirilla
  • 25. Anatomy of a Bacterial Cell Dr.T .V.Rao MD 25
  • 26. Dr.T .V.Rao MD 26 Anatomy of A Bacterial Cell • Outer layer – two components: 1. Rigid cell wall 2. Cytoplasmic (Cell/ Plasma) membrane – present beneath cell wall • Cytoplasm – cytoplasmic inclusions, ribosomes, mesosomes and nucleus • Additional structures – plasmid, slime layer, capsule, flagella, fimbriae (pili), spores
  • 27. Structure of Bacteria • All cells have 3 main components: – DNA (‘nucleoid”) • genetic instructions – surrounding membrane (“cytoplasmic membrane”) • limits access to the cell’s interior – cytoplasm, between the DNA and the membrane • where all metabolic reactions occur • especially protein synthesis, which occurs on the ribosomes • Bacteria also often have these features: – cell wall • resists osmotic pressure – flagella • movement – pili • attachment – capsule • protection and biofilms Dr.T .V.Rao MD 27
  • 28. Typical shapes of bacteria 28 Dr.T .V.Rao MD Most bacteria retain a particular shape; a few are pleiomorphic
  • 29. Typical prokaryotic structures 29 Dr.T .V.Rao MD Working from the outside in…
  • 30. Characteristic grouping (or not grouping) 30 Dr.T .V.Rao MD
  • 31. The Cell Envelope Gram Positive Gram Negative 31 Dr.T .V.Rao MD
  • 32. GRAM POSITIVE Lipoteichoic acid Peptidoglycan-teichoic acid GRAM NEGATIVE Cytoplasm Cytoplasm Cytoplasmic membrane Inner (cytoplasmic) membrane Outer Membrane Lipopolysaccharide Porin Braun lipoprotein 32 Dr.T .V.Rao MD
  • 34. Difference Between Gram-Negative and Gram-Positive Bacteria Gram-Negative Bacteria Gram-Positive Bacteria More complex cell wall. Simple cell wall. Thin peptidoglycan celll wall layer. Thick peptidoglycan celll wall layer. Outer lipopolysaccharide wall layer. No outer lipopolysaccharide wall layer. Retain safranin. Retain crystal violet/iodine. Appear pink/red. Dr.T.V.R Appear blue/purple. ao MD 34
  • 35. Cell Envelope • The cell envelope is all the layers from the cell membrane outward, including the cell wall, the periplasmic space, the outer membrane, and the capsule. – All free-living bacteria have a cell wall – periplasmic space and outer membrane are found in Gram-negatives – the capsule is only found in some strains Dr.T .V.Rao MD 35
  • 36. Structure & Function of Cell Components
  • 37. CELL WALL • Outermost layer, encloses cytoplasm 1. Confers shape and rigidity 2. 10 - 25 nm thick 1. Composed of complex polysaccharides (peptidoglycan/ mucopeptide) - formed by N acetyl glucosamine (NAG) & N acetyl muramic acid (NAM) alternating in chains, held by peptide chains. Dr.T .V.Rao MD 37
  • 38. Dr.T .V.Rao MD 38 Cell Wall • Cell wall – 4. Carries bacterial antigens – important in virulence & immunity 5. Chemical nature of the cell wall helps to divide bacteria into two broad groups – Gram positive & Gram negative 6. Gram +ve bacteria have simpler chemical nature than Gram –ve bacteria. 7. Several antibiotics may interfere with cell wall synthesis e.g. Penicillin, Cephalosporins
  • 39. Transport Across the Cell Membrane • Basic rule: things spontaneously move from high concentration to low concentration (downhill). This process is called diffusion. – Getting many molecules into the cell is simply a matter of opening up a protein channel of the proper size and shape. The molecules then move into the cell by diffusing down the concentration gradient. Passive transport, or facilitated diffusion. • To get things to move from low to high (uphill), you need to add energy: the molecules must be pumped into the cell. Pumps are driven by ATP energy. Active transport. Dr.T .V.Rao MD 39
  • 40. Outer Membrane Dr.T .V.Rao MD 40 Gram negative bacteria • major permeability barrier • space between inner and outer membrane –Periplasmic space store degradative enzymes • Gram positive bacteria • no Periplasmic space
  • 41. Gram positive cell wall The Gram-positive cell wall Dr.T .V.Rao MD 41 is composed of a thick, multilayered peptidoglycan sheath outside of the cytoplasmic membrane. Teichoic acids are linked to and embedded in the peptidoglycan, and lipoteichoic acids extend into the cytoplasmic membrane
  • 42. Gram negative cell wall The Gram-negative cell wall is composed of an outer membrane linked to thin, mainly single-layered peptidoglycan by lipoproteins. The peptidoglycan is located within the periplasmic space that is created between the outer and inner membranes. The outer membrane includes porins, which allow the passage of small hydrophilic molecules across the membrane, and lipopolysaccharide molecules that extend into extracellular space. Dr.T .V.Rao MD 42
  • 44. Dr.T .V.Rao MD 44 Summary of the differences between Gram positive & Gram negative bacteria Property of bacteria Gram Positive Gram Negative Thickness of wall 20-80 nm 10 nm Number of layers in wall 1 2 Peptidoglycan content >50% 10-20% Teichoic acid in wall + - Lipid & lipoprotein content 0-3% 58% Protein content 0% 9% Lipopolysaccharide 0 13% Sensitive to penicillin Yes Less sensitive Digested by lysozyme Yes Weakly
  • 45. Dr.T .V.Rao MD 45 Cytoplasmic (Plasma) membrane • Thin layer 5-10 nm, separates cell wall from cytoplasm • Acts as a semipermeable membrane: controls the inflow and outflow of metabolites • Composed of lipoproteins with small amounts of carbohydrates
  • 46. Other Cytoplasmic Components as e • Ribosomes – protein synthesis • Mesosomes – 1. Multilaminated structures formed invaginations of plasma membran 2. Principal sites of respiratory enzymes 3. Coordinate nuclear & cytoplasmic division during binary fission 4. More prominent in Gram +ve bacteria • Intracytoplasmic inclusions – reserve of energy & phosphate for cell metabolism e.g. Metachromatic granules in diphtheria bacilli Dr.T .V.Rao MD 46
  • 47. Nucleus nded DNA. • No nucleolus • No nuclear membrane • Genome – –single, circular double stra –Haploid –Divides by binary fission Dr.T .V.Rao MD 47
  • 48. Additional Organelles 1. Plasmid – – Extra nuclear genetic elements consisting of DNA – Transmitted to daughter cells during binary fission – May be transferred from one bacterium to another – Not essential for life of the cell – Confer certain properties e.g. drug resistance, toxiD cr.iTt .Vy .Rao MD 48
  • 49. Additional Organelles 2. Capsule & Slime layer – – Viscous layer secreted around the cell wall. – Polysaccharide / polypeptide in nature a) Capsule – sharply defined structure, antigenic in nature • Protects bacteria from lytic enzymes • Inhibits phagocytosis • Stained by negative staining using India Ink • Can be demonstrated by Quellung reaction (capsule swelling reaction) Dr.T .V.Rao MD 49
  • 50. 50 Dr.T .V.Rao MD Additional Organelles 3. Flagella – – Long (3 to 12 µm), filamentous surface appendages – Organs of locomotion – Chemically, composed of proteins called flagellins – The number and distribution of flagella on the bacterial surface are characteristic for a given species - hence are useful in identifying and classifying bacteria – Flagella may serve as antigenic determinants (e.g. the H antigens of Gram-negative enteric bacteria) – Presence shown by motility e.g. hanging drop preparation
  • 51. Types of flagellar arrangement Polar/ Monotrichous – single flagellum at one pole Lophotrichous – tuft of flagella at one pole Amphitrichous – flagella at both poles Peritrichous – flagella all over Amphilophotrichous – tuft of flagella at both ends 51 Dr.T .V.Rao MD
  • 52. Peritrichous (or amphi, or monotrichous lophotrichous Cocci do not have flagella 52 Dr.T .V.Rao MD
  • 53. FLAGELLA • Some bacteria are motile • Locomotory organelles- flagella • Taste environment • Respond to food/poison – chemo taxis 53 Dr.T .V.Rao MD
  • 54. • Flagella – embedded in cell membrane – project as strand – Flagellin (protein) subunits – move cell by propeller like action 54 Dr.T .V.Rao MD
  • 55. 55 Dr.T .V.Rao MD Additional Organelles 4. Fimbriae/ Pili – – Thin, hairlike appendages on the surface of many Gram- negative bacteria – 10-20µ long, acts as organs of adhesion (attachment) - allowing bacteria to colonize environmental surfaces or cells and resist flushing – Made up of proteins called pilins. – Pili can be of two types –  Common pili – short & abundant  Sex pili - small number (one to six), very long pili, helps in conjugation (process of transfer of DNA) http://student.ccbcmd.edu/courses/bio141/lecguide/unit1/prostruct/yespili.html http://student.ccbcmd.edu/courses/bio141/lecguide/unit1/prostruct/nopili.html
  • 56. Additional Organelles 5. Spores – – Highly resistant resting stages formed during adverse environment (depletion of nutrients) – Formed inside the parent cell, hence called Endospores – Very resistant to heat, radiation and drying and can remain dormant for hundreds of years. – Formed by bacteria like Clostridia, bacillus 56 Dr.T .V.Rao MD
  • 57. The cycle of spore formation and germination At the beginning of spore formation, a septum forms, separating the nascent spore from the rest of the cell and all of the genetic material of the cell is copied into the newly-forming cell. The spore contents are dehydrated and the protective outer coatings are laid down. Once the spore is matured it is relleased from the cell. On germination, the spore contents rehydrate and a new bacterium emerges and multiplies. 57 Dr.T .V.Rao MD
  • 58. Shape & position of bacterial spore Oval central Spherical central Oval sub terminal Oval sub terminal Oval terminal Spherical terminal Free spore Non bulging Bulging 58 Dr.T .V.Rao MD
  • 59. Spores • Some bacteria can form very tough spores, which are metabolically inactive and can survive a long time under very harsh conditions. –Allegedly, some bacterial spores that were embedded in amber or salt deposits for 25 million years have been revived. These experiments are viewed skeptically by many scientists. 59 Dr.T .V.Rao MD
  • 60. 60 Dr.T .V.Rao MD Spores • Spores can also survive very high or low temperatures and high UV radiation for extended periods. This makes them difficult to kill during sterilization. • Anthrax • Spores are produced only by a few genera in the Firmicutes: • Bacillus species including anthracis (anthrax) and cereus (endotoxin causes ~5% of food poisoning) • Clostridium species including tetani (tetanus), perfringens (gangrene), and botulinum (botulism: food poisoning from improperly canned food)
  • 61. 61 Dr.T .V.Rao MD Pleomorphic & Involution forms • Pleomorphism – great variation in shape & size of individual cells e.g. Proteus species • Involution forms – swollen & aberrant forms in ageing cultures, especially in the presence of high salt concentration e.g. plague bacillus • Cause – defective cell wall synthesis
  • 62. 62 Dr.T .V.Rao MD Bacterial Taxonomy • Includes three components: 1.Classification : orderly arrangement 2.Identification of an unknown unit 3.Nomenclature : naming the units
  • 63. 63 Dr.T .V.Rao MD Bacterial Taxonomy: Classification • Orderly arrangement : Division – Class – Order – Family – Species Kingdom – Tribe – Genus –  Phylogenetic classification – represents a branching tree like arrangement. One characteristic being used for division at each branch or level  Molecular or Genetic classification – based on the degree of genetic relatedness of different organisms  Intraspecies classification – based on biochemical properties (biotypes), antigenic features (serotypes), bacteriophage susceptibility (phage types)
  • 64. Bacterial Taxonomy: Nomenclature • Two kinds of name are given to bacteria –Casual / common name – for local use, varies from country to country e.g. “typhoid bacillus” –Scientific / International Name – same all over world, consists of two words (in Italics) e.g. Salmonella typhi, Staphylococcus Dr.T .V.Rao MD 64
  • 65. Microscopy helps to Measure and Observe the Bacteria • Measurement – Microorganisms are very small – Use metric system – Metre (m) : standard unit – Micrometre ( m) = 1 x10-6 m – Nanometre (nm) = 1 x10-9 m – Angstrom (Å) = 1 x10-10 m Dr.T .V.Rao MD 65
  • 66. Why we should be Stain Bacteria Bacteria have nearly the same refractive index as water, therefore, when they are observed under a microscope they are opaque or nearly invisible to the naked eye. Different types of staining methods are used to make the cells and their internal structures more visible under the light microscope. 66 Dr.T .V.Rao MD
  • 67. Dr.T .V.Rao MD 67 What is a Stain • A stain is a substance that adheres to a cell, giving the cell color. • The presence of color gives the cells significant contrast so are much more visible. • Different stains have different affinities for different organisms, or different parts of organisms • They are used to differentiate different types of organisms or to view specific parts of organisms
  • 68. Dr.T .V.Rao MD 68 Simple staining • Methylene blue, Basic fuchsin • Provide the color contrast but impart the same color to all the organisms in a smear • Loffler's ethylene blue: Sat. solution of M. blue in alcohol - 30mlKoH, 0.01% in water - 100mlDissolve the dye in water, filter. For smear: stain for 3’. For section: stain
  • 69. Simple Staining Easier to Perform But has Limitations • Simple easy to use; single staining agent used; using basic and acid dyes. • Features of dyes: give coloring of microorganisms; bind specifically to various cell structures Dr.T .V.Rao MD 69
  • 70. Differential Stains Differential Stains use two or more stains and allow the cells to be categorized into various groups or types. Both techniques allow the observation of cell morphology, or shape, but differential staining usually provides more information about the characteristics of the cell wall (Thickness). 70 Dr.T .V.Rao MD
  • 71. Gram staining • Named after Hans Christian Gram, differentiates between Gram- positive purple and Gram-negative pink stains and is used to identify certain pathogens. Dr.T .V.Rao MD 71
  • 72. Dr.T .V.Rao MD 72 Gram staining - Principles • Gram staining is used to determine gram status to classify bacteria broadly. It is based on the composition of their cell wall. Gram staining uses crystal violet to stain cell walls, iodine as a mordant, and a fuchsin or safranin counterstain to mark all bacteria. Gram status is important in medicine; the presence or absence of a cell wall will change the bacterium's susceptibility to some antibiotics. • Gram-positive bacteria stain dark blue or violet. Their cell wall is typically rich with peptidoglycan and lacks the secondary membrane and lipopolysaccharide layer found in Gram-negative bacteria
  • 73. Gram Staining Steps Dr.T .V.Rao MD 73 1. Crystal violet acts as the primary stain. Crystal violet may also be used as a simple stain because it dyes the cell wall of any bacteria. 2. Gram’s iodine acts as a mordant (Helps to fix the primary dye to the cell wall). 3. Decolorizer is used next to remove the primary stain (crystal violet) from Gram Negative bacteria (those with LPS imbedded in their cell walls). Decolorizer is composed of an organic solvent, such as, acetone or ethanol or a combination of both.) 4. Finally, a counter stain (Safranin), is applied to stain those cells (Gram Negative) that have lost the primary stain as a result of decolorization
  • 74. Structure and Reactivity to Gram Staining. Dr.T .V.Rao MD 74
  • 76. Gm+ve cocci & Gm-ve bacilli Dr.T .V.Rao MD 76
  • 77. GRAM-POSITIVE BACTERIA • GRAM-POSITIVE BACTERIA are characterized by having as part of their cell wall structure peptidoglycan as well as polysaccharides and/or teichoic acids. The peptidoglycans which are sometimes also called murein are heteropolymers of glycan strands, which are cross-linked through short peptides. Dr.T .V.Rao MD 77
  • 78. Dr.T .V.Rao MD 78 What are Gram Negative Bacteria • Gram-negative bacteria are those bacteria that do not retain crystal violet dye in the Gram staining protocol. In a Gram stain test, a counter stain (commonly safranin) is added after the crystal violet, coloring all Gram-negative bacteria with a red or pink color. The test itself is useful in classifying two distinct types of bacteria based on the structural differences of their cell walls. On the other hand, Gram-positive bacteria will retain the crystal violet dye when washed in a decolorizing solution.
  • 79. Gram negative bacteria • On most Gram-stained preparations, Gram- negative organisms will appear red or pink because they are counterstained. Due to presence of higher lipid content, after alcohol- treatment, the porosity of the cell wall increases, hence the CVI complex (Crystal violet -Iodine) can pass through. Thus, the primary stain is not retained. 79 Dr.T .V.Rao MD
  • 80. Gram Negative Bacteria • Also, in contrast to most Gram-positive bacteria, Gram-negative bacteria have only a few layers of peptidoglycan and a secondary cell membrane made primarily of lipopolysaccharide Dr.T .V.Rao MD 80
  • 82. Acid-Fast Stain • Acid-fast cells contain a large amount of lipids and waxes in their cell walls – primarily mycolic acid • Acid fast bacteria are usually members of the genus Mycobacterium or Nocardia – Therefore, this stain is important to identify Mycobacterium or Nocardia Dr.T .V.Rao MD 82
  • 83. Ziehl-Neelsen stain 83 • Ziehl-Neelsen staining is used to stain species of Mycobacterium tuberculosis that do not stain with the standard laboratory staining procedures like Gram staining. • The stains used are the red colored Carbol fuchsin that stains the bacteria and a counter stain like Methylene blue or Malachite gree Dn r.T .V ..Rao MD
  • 84. Acid-Fast Organisms Dr.T .V.Rao MD 84 • Primary stain binds cell wall mycolic acids • Intense decolorization does not release primary stain from the cell wall of AFB • Color of AFB-based on primary stain • Counterstain provides contrasting background
  • 85. AFB Staining Methods • Zeihl Neelsen’s-hot stain • Kinyoun’s-cold stain • Modifications Dr.T .V.Rao MD 85
  • 86. Dr.T .V.Rao MD 86 ALBERT’S STAINING FOR C.diptheria
  • 87. Diphtheria is Serious Disease When you suspect Diphtheria • In all cases of suspected cases of Diphtheria, stain one of the smears with Gram stain • If Gram stained smear shows morphology suggestive of C.diptheria, proceed to do Albert staining which demonstrates the presence or absence of metachromatic granules. Dr.T .V.Rao MD 87
  • 88. Dr.T .V.Rao MD 88 Appearance of C.diptheria • C.diptheria are thin Gram positive bacilli, straight or slightly curved and often enlarged (clubbing) at one or both ends and are arranged at acute angles giving shapes of Chinese letters or V shape which is characteristic of these organisms (Fig 1). Present in the body of the bacillus are numerous metachromatic granules which give the bacillus beaded or barred appearance. These granules are best demonstrated by Albert’s stain.
  • 89. Dr.T .V.Rao MD 89 Albert staining • Albert stain I • Toluidine blue 0.15 gm Malachite green 0.20 gm Glacial acetic acid 1.0 ml Alcohol(95%) 2.0 ml Distilled water 100 ml • Albert stain II • Iodine 2.0 gm Potassium iodide 3.0 gm Distilled water 300 ml
  • 90. Dr.T .V.Rao MD 90 Albert staining Procedure • Cover the heat-fixed smear with Albert stain I. Let it stand for two minutes. • Wash with water. • Cover the smear with Albert stain II. Let it stand for two minutes. • Wash with water, blot dry and examine. •
  • 91. How the C.diptheria appear • To demonstrate metachromatic granules in C.diptheria. These granules appear bluish black whereas the body of bacilli appear green or bluish green. • Dr.T .V.Rao MD 91
  • 92. Dr.T .V.Rao MD 92 • Programme created by Dr.T .V .Rao MD from several resources in world wide web, and Thankful for Dr. Ekta www.medmicrobes from basic programme on Bacterial cell • Email • doctortvrao@gmail.com