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Presentation at the VIVO 2011 conference

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Presentation at the VIVO 2011 conference

  1. 1. CIARD - creating a global framework forinformation sharing in agricultural researchand innovation – Role of VIVO Talk at the VIVO 2011 conference Dr. Johannes Keizer Office of Knowledge Exchange, Research and Extension Food and Agriculture Organization of the UN Presentations by Johannes Keizer is licensed under a Creative Commons Attribution- NonCommercial-ShareAlike 3.0 Unported License.
  2. 2. “... FAO’s principle task is to work to ensure that the world’s knowledge of food and agriculture is available to those who need it when they need it and in a form which they can access and use ...”
  3. 3. There will be generated morescientific data in the next 5 yearsthan in the history of humankind http://aims.fao.org johannes keizer
  4. 4. Contribution and Participation in ScienceTerritory size shows proportion of scientific papers published in 2001 byauthors living there.Copyright SASI Group (University of Sheffield) and Mark Newman (University of Michigan) http://aims.fao.org johannes keizer
  5. 5. http://aims.fao.org johannes keizer
  6. 6. Global Trends in Publishing http://aims.fao.org johannes keizer
  7. 7. http://aims.fao.org johannes keizer
  8. 8. The Internet! http://aims.fao.org johannes keizer
  9. 9. Aggregation States of Knowledge http://aims.fao.org johannes keizer
  10. 10. Data and Information in Agricultural Research andExtension http://aims.fao.org johannes keizer
  11. 11. Distributed Repositories• stats• gene banks• gis data• blogs,• journals• open archives• raw data• technologies• learning objects• ……….. http://aims.fao.org johannes keizer
  12. 12. Task 1: making services ? ? ? http://aims.fao.org johannes keizer
  13. 13. Task 2: getting knowledge? ? ? http://aims.fao.org johannes keizer
  14. 14. Task 3: working together ? ? ? How can I get in real time all the specimen data on useful insects from all people making research on this on my desktop? How can I share in real time my data with other colleagues working on that. http://aims.fao.org johannes keizer
  15. 15. http://www.ciard.net http://aims.fao.org johannes keizer
  16. 16. http://aims.fao.org johannes keizer
  17. 17. The Project: agINFRA Enforce Webpublishing of Data Produce linked open data from all datasets Use common reference vocabularies to interlink data sets Don’t wait ! Wrap the Legacy http://aims.fao.org johannes keizer
  18. 18. The Infrastructure elements VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
  19. 19. Lod Generator: process http://aims.fao.org johannes keizer
  20. 20. Data Services: process http://aims.fao.org johannes keizer
  21. 21. Under Construction!!!!!!! VocBench VocBench RING Tools vocabulary server Linked Open Data LOD AGROVOCconcepts and entities routemap to information enabled software AgroTagger triples nodes and gateways Triplifying AGRIS Linking Data! Data Services Cloud LOD Generator DrupalRDF storage for front ends for triple stores Webservices + APIs triplifier, to triple stores concept and entity triples The CIARD R.I.N.G identifier “AgriVIVO http://aims.fao.org johannes keizer
  22. 22. So… Where does VIVO fit in? http://aims.fao.org johannes keizer
  23. 23. Background Many Agriculture Information communities, how can we bring together an international network of researchers in this domain A precedent for a community open source based solution http://aims.fao.org johannes keizer
  24. 24. Many Agriculture Communities• E-Agriculture site has 7111 members from 150 countries• CIARD site: 6038 seeded from E-Agriculture site• AIMS site has 280 users• SIDALC has 150+ institutions in 22 LAC countries• IAALD has 400+ members in 80 countries• None of these user communities “talk” to each other (though there is a lot of overlap http://aims.fao.org johannes keizer
  25. 25. Precedent for Open Source Applications AgriDrupal – A content management system based on Drupal with Agriculture Information Systems customizations AgriOceanDSpace – An institutional repository platform, customized for the Agriculture domain http://aims.fao.org johannes keizer
  26. 26. How about “AgriVivo”? An open source semantic web application, customized for managing people (and their activities) that work in the Agriculture domain. Enabling an International Network of Agriculture researchers… http://aims.fao.org johannes keizer
  27. 27. AgriVivo Agri VIVO Triple Store AGRIS E-AGRICULTUREAIMS SIDALC IAALD http://aims.fao.org johannes keizer
  28. 28. AgriVivo: Areas of Work Multi Language Support Integration of Agricultural Ontolologies Development of Harvesters for ingest of Agricultural documents (AGRIS) Community Search of AgriVivo Sites http://aims.fao.org johannes keizer
  29. 29. Linking Data VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
  30. 30. Serendipity linking http://aims.fao.org johannes keizer
  31. 31. Semantic Linking http://aims.fao.org/aos/agrovoc/c_7825 http://aims.fao.org johannes keizer
  32. 32. Semantic Linking http://aims.fao.org/aos/agrovoc/c_7825 http://eurovoc.europa.eu/218754 http://aims.fao.org johannes keizer
  33. 33. http://aims.fao.org/aos/agrovoc/c_7825 http://eurovoc.europa.eu/218754http://aims.fao.org johannes keizer
  34. 34. http://aims.fao.org/aos/agrovoc/c_7825http://agclass.nal.usda.gov/nalt/2011.xml#1780 http://eurovoc.europa.eu/218754 http://aims.fao.org johannes keizer
  35. 35. Linking data through common URIs NALT http://agclass.nal.usda.g http://www.agnic. AGROVOC ov/nalt/2011.xml#1780 org/search/CAT8 http://aims.fao.org/aos/a 5822953 grovoc/c_7825 Eurovoc TOXIC UNBIS http://eurovoc.euro pa.eu/218754 SUBSTANCES http://agris.fao.org/agris- search/search/display.do?f=1996/TR /TR96001.xml;TR9600026 http://unbisnet.un.org:8080/ipac20/ ipac.jsp?session=128F308557F34. http://eur- 283092&profile=bib&uri=full=3100 lex.europa.eu/LexUriServ/LexUr 001~!685149~!1&ri=1&aspect=sub iServ.do?uri=OJ:L:2010:202:00 tab124&menu=search&source=~!h 11:0015:EN:PDF orizonhttp://aims.fao.org/aos/agrovoc/c_12332 owl:sameAs http://eurovoc.europa.eu/219871 skos: exact match UNBIS: Toxic Substances http://aims.fao.org johannes keizer
  36. 36. http://lprapp14:8090/openagris/search.do?recordID=JP2010001379 http://aims.fao.org johannes keizer
  37. 37. Open AGRIS threads http://aims.fao.org johannes keizer
  38. 38. The AIMS Community http://aims.fao.org johannes keizer
  39. 39. Thank You! Credits: John Ferreira, Imma Subirats, Yves Jaques, Valeria Pesce, Fabrizio Celli, Ahsan Morshed, Catarina Caracciolo, Dickson Lukose, Gudrun Johannsen, Stefano Anibaldi, Armando Stellato, Tom Baker and many others
  40. 40. Annexes
  41. 41. The VocBench VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
  42. 42. The VocBench http://aims.fao.org johannes keizer
  43. 43. VocBench Features Domain independent Structure independent (i.e. thesauri, Glossaries, etc) Supports RDF (SKOS, SKOS-XL), OWL Supports collaborative editing Supports editorial workflow, with user roles Simple and advanced search Supports data export: SKOS, Relational format (MySQL) http://aims.fao.org johannes keizer
  44. 44. http://aims.fao.org johannes keizer
  45. 45. The AGROVOC concept scheme AGROVOC Concept Other schemeskos:inScheme Scheme in FAO skos:topConceptOf Another scheme in FAO 6211 Further schemes skos:broader skos:inScheme in FAO 8171 skos:broader SKOS 1474 SKOS Label Concept skos:broader 12332 rdf:type skosxl:prefLabel :bar skos:literalForm “maize” skosxl:altLabel has_synonym :foo rdf:type has_translation maïs (fr) has_synonym :foo skos:literalForm “corn” has_synonym :bar http://aims.fao.org johannes keizer
  46. 46. http://aims.fao.org johannes keizer
  47. 47. http://aims.fao.org johannes keizer
  48. 48. LOD Generator/Agrotagger VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
  49. 49. AgroTagger• Does Concept identification in unstructured texts• Uses Agrovoc as a controlled vocabulary• Prototype under testing with excellent results (entire repository of ICARDA indexed)• Will produce in future Structured RDF files that can be used to link data like “open Calais” http://aims.fao.org johannes keizer
  50. 50. http://aims.fao.org johannes keizer
  51. 51. http://aims.fao.org johannes keizer
  52. 52. AGRIS Journal disambiguation 2.644.818 AGRIS records 2.171.113 records are journal records (82.09%) 1.788.083 journal records have been covered by the disambiguation process (82.35%) 14.658 journals have been correctly disambiguated ~20.000 strings must be examined yet: they refer to journal’s titles Triples have been generated: http://aims.fao.org johannes keizer
  53. 53. Triplifying AGRIS (small example)<?xml version="1.0" encoding="utf-8"?><rdf:RDF xmlns:ags="http://purl.org/agmes/1.1/" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:bibo="http://purl.org/ontology/bibo/"xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/"><bibo:Journal rdf:about="http://aims.fao.org/aos/journal/c_b6e4ca85"> <bibo:ISSN>0101-9066</bibo:ISSN> <bibo:ISSN>0101-9066</bibo:ISSN> <dct:title><![CDATA[Circular técnica]]></dct:title> <dct:alternative><![CDATA[Circular técnica (Centro Nacional de Pesquisa de Seringueira e Dendê)]]></dct:alternative> <dct:alternative><![CDATA[Circular Tecnica - Centro Nacional de Pesquisa da Seringueira e Dende]]></dct:alternative> <dct:alternative><![CDATA[Circular técnica - CNPSD]]></dct:alternative> <dct:alternative><![CDATA[Circ. téc.]]></dct:alternative> <ags:publisherPlace rdf:resource="http://aims.fao.org/aos/geopolitical.owl#Brazil"/> <dct:publisher><![CDATA[Empresa Brasileira de Pesquisa Agropecuária, Centro Nacional de Pesquisa de Seringueira eDendê]]></dct:publisher> <dct:language>por</dct:language> <dct:date>1980</dct:date> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_10795"/> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_4650"/> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_32372"/> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_332"/> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_3589"/> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_5556"/></bibo:Journal> http://aims.fao.org johannes keizer
  54. 54. The CIARD RING VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
  55. 55. The CIARD RING Roadmap to information nodes and gateways Community switchboard to find data sources Not only registry, but dynamic instrument for data linking http://aims.fao.org johannes keizer
  56. 56. RING - Charts and numbers http://ring.ciard.net http://aims.fao.org johannes keizer
  57. 57. RING – Numbers http://ring.ciard.net/totalsNumber ofdocumentspotentially reachablethrough the servicesregistered in theRING.Types of serviceconsidered:documentrepositories andbibliographicdatabases. http://aims.fao.org johannes keizer
  58. 58. The Infrastructure elements VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
  59. 59. http://aims.fao.org http://aims.fao.org johannes keizer
  60. 60. Agricultural Information Management Standards Tools Standards http://www.ciard.net http://ring.ciard.net http://aims.fao.orgAdvice http://agris.fao.org Services http://aims.fao.org johannes keizer

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