3. Amino Acids : 1) Building Block of Proteins
2) Precursors of many
Nitrogenous containing compounds
These molecules include:
Porphyrins, Neurotransmitters, Hormones, Creatine,
Purines, and Pyrimidines.
5. Alanine
• Serves as a carrier of Ammonia and of the carbons of
Pyruvate from Skeletal Muscle to Liver via the Cori Cycle.
• Together with Glycine Constitutes a major function of the
free amino acids in Plasma.
6. Arginine
Serves as a Nitrogen atoms in Urea Biosynthesis.
Guanidino Group of Arginine is incorporated into Creatine.
Following conversion to Ornithine Its Carbon
Skeleton becomes that of the Polyamines: Putrescine and
Spermine.
7.
8. Cysteine
Conversion of Cysteine to Taurine is by the Non-Heme Fe2+
Enzyme Cysteine Dioxygenase.
L- Cysteine Decarboxylation Mercaptoethanolamine
Constituent of Coenzyme A
9. Three enzyme – catalyzed
reactions converts cysteine to
taurine
10. Metabolic Role of Cysteine
Glucogenic: Cysteine is catabolized to Pyruvic acid
which is Glucogenic.
Formation of Glutathione
Formation of Taurine: Cysteine is utilised in the
formation of ‘Taurine’, which combines with cholic
acid obtained from degradation of cholesterol in
Liver to form Bile acid ‘Taurocholic acid’.
11. Glycine
Many drugs, drug metabolites, and other compounds with
carboxyl groups are excreted in the urine as glycine
conjugates.
Specialized Products :
I. Glycine Conjugates: Glycocholic Acid,
Taurocholic Acid
II. Heme
III. Glutathione
IV. Purines
V. Creatine
12. Metabolites and pharmaceuticals excreted as water-
soluble glycine conjugates include Glycocholic acid and
hippuric acid formed from the food additive benzoate.
13.
14. Glutathione (GSH)
Glutathione (GSH), present in plants, animals, and some
bacteria, often at high levels.
Derived from glycine, glutamate, and cysteine.
Glutathione probably helps maintain the sulfhydryl
groups of proteins in the reduced state and the iron of
heme in the ferrous (Fe2+) state.
16. Glutathione serves as a Reductant; is conjugated to
drugs to make them more water soluble
(Detoxification).
Its redox function is also used to remove toxic
peroxides formed in the normal course of growth and
metabolism under aerobic conditions Reaction
catalyzed by Glutathione Peroxidase
18. Creatine phosphate/ Phosphocreatine
Found in muscle, a high-energy compound that can
reversibly donate a phosphate group to adenosine
diphosphate(ADP) to form ATP.
Provides a small but rapidly mobilized reserve of
high-energy phosphates used to maintain
the intracellular level of Adenosine triphosphate
(ATP) during the first few minutes of intense
muscular contraction.
Creatine
19. Synthesis of Creatine:
Creatine is synthesized from Glycine and the Guanidino
group of Arginine, plus a methyl group from S-
adenosylmethionine.
Creatine is reversibly phosphorylated to creatine
phosphate by Creatine kinase, using ATP as the
phosphate donor.
The amount of creatinine produced is related to muscle
mass.
The level of creatinine excretion (clearance rate) is a
measure of renal function
20.
21. Histidine
Decarboxylation of histidine by the pyridoxal 5'-phosphate-
dependent enzyme histidine decarboxylase forms Histamine.
Histamine.
A biogenic amine that functions in allergic reactions and gastric
secretion.
Histamine is present in all tissues.
Its concentration in the hypothalamus of the brain fluctuates
with the circadian rhythm.
22. Histidine compounds present in the human body
include Ergothioneine, Carnosine, and Anserine(γ-
Aminobutyryl Histidine).
Carnosine ( β-Alanyl-histidine), Homocarnosine (β -
Aminobutyryl-Histidine) and Anserine are major
constituents of excitable tissues, brain, and
skeletal muscle.
23.
24. Methionine
NonProtein fate of Methionine: Conversion to S-Adenosyl
Methionine (SAM)
SAM Synthesized from
Methionine and ATP.
Methionine and ATP
Methionine
Adenosyltransferase (MAT)
S - Adenosyl Methionine
25. • Human tissues contain three MAT isozymes.
MAT-1 & MAT-3 Liver
MAT-2 Non-Hepatic Tissues
• Severely Decreased Hepatic MAT-1 and MAT-3 activity
results in Hypermethionemia.
• If there is residual MAT-1/MAT-3 activity and MAT-2
activity is normal, a high tissue concentration of
methionine will assure synthesis of adequate amounts
of S-adenosylmethionine.
26. Metabolic fate of L-methionine
Stage 1: Activation of methionine and its
demethylation to form L-Homocysteine.
Stage 2: Conversion of L-homocysteine to L-
homoserine.
Stage 3: Degradation of L-homoserine to end
products L-propionyl-CoA and α-amino
butyrate.
27.
28. Methionine is “Glucogenic”:
Propionyl-CoA the end
product is glucogenic.
Creatine formation
Lipotropic function
Polyamine synthesis
Metabolic Role of Methionine
29.
30. Polyamines
Putrescine , Spermidine , Spermine
Ornithine (Formed from Arginine in Urea Cycle)
is a Precursor
Functions:
Cell Proliferation and Growth
Putrescine--- Best Marker for Cell Proliferation
Required as “Growth Factors” for Cultured
mammalian and bacterial cells
33. Serine
Serine participates in the biosynthesis of sphingosine and of
purines and pyrimidines, where it provides carbons 2 and 8
of purines and the methyl group of thymine.
Conversion of serine to Homocysteine is catalyzed by
Cystathionine β- synthase.
Homocystinuria: genetic defects in cystathionine β -
synthase (heme protein) that catalyze the pyroidoxical 5
phosphate dependent condensation of serine with
homocysteine to form cystathionine.
34. Tryptophan
Glucogenic and Ketogenic
Nicotinic acid formation: Tryptophan rich diet has “sparing
effect” on niacin requirement in diet. 60 mg of
tryptophan can give rise to 1 mg of Niacin.
Formation of Serotonin
Formation of Melatonin
35. Serotonin
• Also called 5-hydroxytryptamine, is synthesized and
stored at several sites in the body.
• Largest amount of serotonin is found in cells of the
intestinal mucosa.
• Smaller amounts occur in the central nervous system,
where it functions as a neurotransmitter, and in
platelets.
41. Catecholamines
Norepinephrine is the principal neurotransmitter of
Sympathetic postganglionic endings.
Catecholamines are stored in synaptic knobs of
neurons that secrete it.
Norepinephrine and epinephrine are also synthesized
in the adrenal medulla.
Tyrosine is transported into catecholamine-secreting
neurons and adrenal medullary cells where
catecholamine synthesis takes place.
42. Synthesis of catecholamines:
The Catecholamines are synthesized from Tyrosine.
Tyrosine Hydroxylated to form 3,4-
DihydroPhenylalanine (DOPA).
Rate Limiting Step- Step catalyzed by Tyrosine
Hydroxylase
Tetrahyrobiopterin requiring enzyme.
47. Melanin
Tyrosine is the precursor of melanins that are produced
from Dopaquinone.
The two primary melanins are Eumelanins, which are
dark pigments having a brown or black color, and
Pheomelanins that have red or yellow color.
The yellow color of Pheomelanin pigments comes from
the sulfur in cysteine that is combined with
Dopaquinone.
48. Ratio of Eumelanin & Pheomelanin
Predicts the Dark Hair or Light Hair [Depending the
Distribution of Melanin-filled Granules along the Hair Shaft].
Natural loss of Hair Result of Ageing when Melanin
Production in Human Melanocytes Shuts Down and these
cells are not replaced which occurs in Young Person
49. Non- α Amino Acids
Non- α amino acids present in tissues in a free form
include –
I. β - Alanine,
II. β- Aminoisobutyrate, and
III. γ - Aminobutyrate (GABA).
Alanine is also present in combined form in coenzyme A
and in the β -Alanyl dipeptides: Carnosine, Anserine and
Homocarnosine .
50. β -Alanine & β –Aminoisobutyrate
Formed during catabolism of the pyrimidines Uracil and
Thymine,respectively.
Traces of β -alanine also result from the hydrolysis of β
-alanyl dipeptides by the enzyme Carnosinase.
β -Aminoisobutyrate also arises by transamination of
methylmalonate semialdehyde, a catabolite of L-
valine.
51. β- Alanyl Dipeptides
Carnosine, Homocarnosine and Anserine
ATP + beta alanine ------> beta alanyl-AMP + Ppi
Beta alanyl-AMP + L-Histidine ------> Carnosine + AMP.
•Catalyzed by carnosine synthetase.
•Carnosinase (Carnosine hydrolase) – hydrolysis carnosine
to beta alanine and L-histidine.
•Homocarnosine:
- present in human brain.
- Synthesized by carnosine synthetase.
52. γ- Aminobutyrate
• GABA Inhibitory Neurotransmitter
• Alters Transmembrane potential differences.
• Formed by Decarboxylation of Glutamate by L-
Glutamate Decarboxylase.
Clinical Implications
• Rare Genetic Disorder of GABA Metabolism
includes a defective GABA Aminotransferase
Enzyme that participates in the catabolism of GABA
If the amine group and carboxylic group of the amino acid are attached to the first carbon atom of the carbon chain, we call it an alpha amino acid.
L-aminos rotate counterclockwise or left in a process known as levorotation, while D-amino acids rotate clockwise to the right, in what's known as dextrorotation
Showing cori cycle, pyruvate produced by glycolysis in skeletal muscle is an important substrate for gluconeogenesis. Under anerobic conditions pyruvate is converted to lactate by lactate dehydrogenase. Lactate needs to be further reconverted to pyruvate which then passes towards TCA cycle and oxidative phosphorylation to generate ATP. Lactate produced in the skeletal muscle cannot be converted into pyruvate in skeletal muscle due to lack of enzyme of gluconeogenesis i.e glucose 6 phosphatase and fructose 1 6 bis phosphatase. So lactate is carried out by blood to liver and converted to pyruvate for gluconeogenesis.
Glucose alanine cycle (cahill cycle): in fasting state after fat depletion there is breakdown of proteins and amino acid and the carbon skeleton of amino acid are used to form pyruvate . Then by transamination, pyruvate is converted to alanine and is transported back to liver where there is again transamination of alanine to pyruvate. It provides the indirect way of utilizing muscle glycogen to maintain blood glucose in fasting state.
Nitric oxide and citrulline is synthesized from the arginine with help of nitric oxide synthase enzyme and multiple cofactors.
Ornithine and ammonia merge to form citrulline
Arginine, an essential amino acid, has a positively charged guanidino group. Arginine is well designed to bind the phosphate anion at the center of protein.
Reaction catalyzed by Nitric Oxide Synthase a five-electron oxidoreductase with multiple cofactors, converts one nitrogen of the Guanidine group of arginine to Nitric oxide (NO), an intercellular signaling molecule that serves as a neurotransmitter, smooth muscle relaxant, and vasodilator.
Arginine can contribute its nitrogen with help of arginase enzyme to convert urea and also its guanidino group to creatine. In conversion arginine is converted to ornithine where its carbon skeleton becomes that of polyamines putrescine and spermine.
The reaction catalyzed by NO synthase, a five-electron oxidoreductase with multiple cofactors, converts one nitrogen of the guanidine group of arginine to L-ornithine and NO
Cysteine undergo decarboxylations and gives mercaptoethanolamine which with pantothenic acid gives coenzyme A.
Cysteine has a sulfhydryl group (–SH) that can bond with another cysteine sulfhydryl group to form a cystine “disulfide” bond.
Conversion of cysteine to taurine is initiated by oxidation to sulfinoalanine (cysteine sulfinate), catalyzed by the non heme Fe2+ enzyme cysteine dioxygenase.
Decarboxylation of cvsteine sulfinate by sulfinoalanine decarboxylase forms hypotaurine, whose oxidation by hypotaurine dehydrogenase forms taurine.
Formation of Glutathione : Cysteine is required for synthesis of glutathione. G-SH is the reduced form, active group is SH group. G-S-S-G is the oxidized form.
Glutathione is a substance made from the amino acids glycine, cysteine, and glutamic acid
Glycine is incorporated into Creatine, and the nitrogen and -carbon of glycine are incorporated into the Pyrrole rings and the methylene bridge carbons of Heme
the entire glycine molecule also becomes atoms C4, C5, and N7 of Purines.
Penicillin and furesemide.
In a conjugation reaction of benzoyl CoA with glycine give Hippurate which is excreted through urine.
When it is not attached to an acyl group, it is usually referred to as 'CoASH’.
With the help of hydroxylase enzyme cholesterol is converted into hydroxvcholesterol. Through several steps hydroxycholesterol is converted to cholic acid and chenodeoxycholic acid which on conjugation with glycine and taurine yields glycocholic acid and tauro and glycochenodeoxycholic acid. After conjugation with glvcine and taurine is known as primary bile acids. These bile acids on deconjugation and dehydroxylations produce deoxycholic acid and lithocolic acids.(secondary bile acids)
Sec. bile acids are needed for digestion and absorption of lipids, as well as uptake of cholesterol and fat-soluble vitamins
Tripeptide.
Glutathione biosynthesis involves two ATP dependent steps. In first step glutamate and cysteine are involved requires enzyme gamma glutamyl cysteine synthetase converts to gamma glutamyl cysteine and in second step glycine is added to this step and with enzyme glutathione synthetase converts into glutathione.
Glutathione consists of the sulfahydryl groups which sticks the free radicals and toxins serving its function as an antioxidant.
It also helps to reduce the oxidized protein in the body resulting in the oxidation of two molecules of the glutathione forming glutathione disulfide molecule.
This reaction is catalyzed by Glutathione Peroxidase, enzyme. It contains a covalently bound Selenium (Se) atom in the form of Selenocysteine which is essential for its activity.
Oxidized form of glutathione converts lipid peroxide to hydroxy fatty acid with help of selenium dependent glutathione peroxidase enzyme and in redox form, the NADPH from HMP shunt with glutathione reductase enzyme again revert back to reduced form.
Basic purine has nine atoms in its structure. Purine has two cycles: a six-membered pyrimidine ring and a five-membered imidazole ring fused together. Four nitrogen atoms are present at the 1, 3, 7, and 9 positions.
entire glycine molecule also becomes atoms C4, C5, and N7 of Purines.
[Note: The amount of creatine phosphate in the body is proportional to the muscle mass.
[Note: The presence of creatine kinase in the plasma is indicative of tissue damage, and is used in the diagnosis of myocardial infarction]
Glycine combines with arginine to form ornithine and then forms guanidoacetate by amidinotransferase enzyme (kidney) and through blood carried to liver where it reacts with SAM and undergo methylation rxn to form creatine.(liver). Now creatine gets a phosphorylated from ATP catalyzed by enzyme creatine kinase to form Creatine phosphate (this form is present in muscle and brain) and that creatine phosphate if eliminates an inorganic phosphate and water for ATP/ADP pool forms creatinine.
Basic amino acid with imidazole ring
Decarboxylation reaction is defined as a chemical reaction that eliminates a carboxyl group and liberates carbon dioxide (CO2)
Carnosine, Homocarnosine and Anserine ---- endogenous dipeptides concentrated in brain, muscles and olfactory bulbs.
Urinary levels of 3-methylhistidine are unusually low in patients with Wilson's disease.
Ergothioneine Histidine-Derived, from ergot fungus Claviceps purpurea in 1909
Histidine undergoes decarboxylation by the pyridoxal 5 phosphate dependent enzyme histidine decarboxylase.
Transfer of methyl group from methionine to an acceptor molecule is termed as transmethylation.
The methyl group of methionine becomes available for transmethylation only in an active form of methionine i.e SAM
Imp.. Transmethylation reactions include norepinephrine to epinephrine, phosphatidylethanolamine to phosphatidylcholine , gunaidoacetoacetate to creatine, ethanolamine to choline, nucleotides to methylated nucleotides, Acetyl serotonin to melatonin.
Isozymes = a group of enzymes that catalyze the same reaction but have different enzyme forms and catalytic efficiencies. Eg LDH, alfa amylase.
There is a conversion to the active form SAM with presence of MAT and ATP. Now the methyl group is transferred to acceptor and this accepter is converted to methylated acceptor and the enzyme is methyltransferase and SAM gets converted to the S adenosylhomocysteine. From SAH adenosine portion is removed after hydrolysis and converted to L- homocysteine.
Now homocysteine gets condensed with serine to form cystathionine with help of an enzyme cystathionine synthatase which requires PLP and enzyme Thionase to convert into L-homoserine.
Homoserine in presence of enzyme homoserine deaminase gets converted to alfa ketobutyrate with removal of ammonia. Alfa ketobutyrate undergoes oxidative decarboxylations and gets convered to the propionyl coa and gets converted to succinyl coa and gets entered into TCA cycle.
Lipotropic function: “Active” methionine can donate “methyl group” and can form choline from ethanolamine. Choline is lipotropic and prevents accumulation of fat in Liver.
Formation of methyl mercaptan and its clinical significance: Patients with severe Liver diseases, exhibit foul odour in breath called as Foetor hepaticus. It has been attributed to methyl mercaptan, which appears to be formed from methionine. Methyl mercaptan has been found in urine of these patients. Methionine on transamination produces corresponding ketoacid which on hydrolysis produces methyl mercaptan.
Polyamines (spermine and spermidine involved in DNA packing) inhibitors are designed to treat African sleeping sickness, caused by trypanosomes. These inhibitors inhibit ornithine decarboxylase. E.g. difluoromethylornithine (DFMO) this binds to Ornithine decarboxylase and inactivate it.
Putrescine, spermidine and spermidine are derived from the methionine and ornithine. Around 15% of methionine are used to synthesize polyamines.
Orninthine undergoes decarbxylation reactions to form putrescine ,first polyamine to get synthesized, then SAM also goes decarboxylations to form decarboxylated S- adenosylmethionine which donate a methyl group to putrescine to form spermidine with help of spermidine synthase enzyme and again that Decarboxylated S adenosylmethionine donates methyl group to spermidine to form spermine with spermine synthase enzyme.
Again spermine can be oxidized by the enzyme polyamine oxidase in the liver to spermidine and putrescine. And putrescine can be oxidized by a copper containing diamine oxidase to form CO2 and ammonium ion.
Sphingosine (2-amino-4-trans-octadecene-1,3-diol) is an 18-carbon amino alcohol with an unsaturated hydrocarbon chain
The transsulfuration pathway is a metabolic pathway where transfer of sulfur from homocysteine to cysteine occurs.
Tryptophan contains an α-amino group, an α-carboxylic acid group, and a side chain indole
Melatonin is a ubiquitous natural neurotransmitter-like compound (Figure 1) secreted by the pineal gland in the brain
Effects of drugs on enzyme MAO
•Drugs which inhibit the enzyme, e.g. iproniazide, will prolong serotonin action on the brain and produce a psychic stimulation due to increased cerebral activity.
• Serotonin of the brain is in a bound form. Drugs like reserpine, a common anti-hypertensive drug, acts by releasing the serotonin from its bound form and thus making it readily available to MAO action. Hence reserpine produces a depression of cerebral activity.
This induces constriction of injured blood vessels and enhances platelet aggregation to minimize blood loss
Following hydroxylation of tryptophan to 5- hydroxytrvptophan by liver tryptophan hydroxylase, and then subsequent decarboxvlation forms serotonin.
Catabolism of serotonin is initiated by deamination to 5- hydroxyindole-3-acetate(catalyzed by monoamine oxidase).
Serotonin and 5 – methoxytryptamine are metabolized to corresponding acids by MAO.
N- acetylation of serotonin and O – methylation in pineal glands forms melatonin.
Serotonin has multiple physiologic roles, including pain perception, and regulation of sleep, temperature, and blood pressure.
Melatonin is synthesized from serotonin by N-acetylation, in which acetyl-CoA serves as acetyl donor, and followed by methylation of the 5-OH group, in
which “S-adenosyl methionine” (“Active” methionine) serves as methyl donor. The reaction of methylation of –OH group is localised in Pineal
body.
Serotonin-N-acetylaseis the rate limiting enzyme. Both synthesis and secretion of melatonin by the pineal gland is regulated by light.
a hydroxy substituent at position 4 on the phenyl ring.
etrahydrobiopterin (BH4, THB), also known as sapropterin (INN),[5][6] is a cofactor of the three aromatic amino acid hydroxylase enzymes,[7] used in the degradation of amino acid phenylalanine and in the biosynthesis of the neurotransmitters
DOPA is decarboxylated in a reaction requiring Pyridoxal Phosphate to form dopamine, which is hydroxylated by the copper-containing dopamine β-hydroxylase to yield Norepinephrine.
Epinephrine is formed from norepinephrine by an N-methylation reaction using S-adenosylmethionine as the methyl donor.
Dopamine hydroxylase
Catecholamines are inactivated by oxidative deamination, catalyzed by monoamine oxidase(MAO), and by O-methylation carried out by Catechol-O-Methyltransferase.
The metabolic products of these reactions are excreted in the urine as Vanillylmandelic acid from Epinephrine and Norepinephrine, and Homovanillic acid from Dopamine
HVA presence supports a diagnosis of neuroblastoma and malignant pheochromocytoma
Insufficient Dopamine Production is a cause of Parkinson’s disease . Over production of Dopamine in the brain may be linked to psychological disorders such as Schizophrenia.
Natural loss of hair color occurs as a result of aging when melanin production in human melanocytes located near the base of hair follicles shuts down and these defective cells are base of hair follicles shuts down and these defective cells are not replaced as they normally are in younger individuals.
Carnosine is synthesized by bonding of the amino acids β-alanine (regulatory function) and L-histidine (biological activity), a reaction catalyzed by carnosine synthetase
In human there are two isoenzymes of carnosine hydrolase one is present in serum, the other in cytosol of most tissue. The heritable disorder carnosine deficiency is characterized by carnosinuria that persists even if carnosine is excluded from the diet.
GABA is formed by decarboxylation of glutamate by glutamate decarboxylase. Transamination of GABA forms succinate semi aldehyde which can be reduced to gamma hydroxybtyrate by lactate dehydrogenase or can be oxidized to succinate