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Introduction
The book “Geomicrobiology and Biogeochemistry” edited
by Nagain P & Singh A [1] covers a holistic approach of
geomicrobiology and biogeochemistry related to important topics
of biomining, bioremediation, biotechnological applications
of extremophiles, subsurface petroleum microbiology, metal
extraction and soil nutrient cycling .
In general research, microbes show an important geoactive
role in the environment. Microorganism intermingle with metals
and minerals in the natural and artificial environment, changing
their physical and chemical state, and also these metals has ability
to affect the growth activity and behavior of soil flora and fauna
[2]. Various types of microbes e.g., prokaryotes, eukaryotes and
higher organisms have special mechanisms for biotransformation
though the biogeochemical cycle of different element like sulphur,
iron, phosphorus, potassium, aluminium, metalloids, actinides and
metal radionuclides. These elemental transformations can have
ability for beneficial or harmful values in the context of human
beings. Some bacteria and fungi having most important properties
for bioremediation of organic and inorganic pollutant from
contaminated environments [3]. Others, microbes have properties
to decay, natural and synthetic materials, rock and mineral-based
building materials, acid mine drainage and containment, all with
immense social and economic consequences. The benefits of
microorganisms in the biosphere categorized as geomicrobiology
one of the most important concepts within microbiology for
requiring an interdisciplinary approach to delineate ecological
conservation and applied significance in biotechnology [4].
Geomicrobiology branch only defines as the roles of microbes in
geological processes [5,6].
The present book review also highlighting like
geomicrobiology andbiogeochemistry,biomining,bioremediation,
biotechnological applications of extremophiles, subsurface
petroleum microbiology in details about practical application in
biosphere i.e. extremophile, their economic relevance and wide
applications for societal benefits [7]. The aim of this book is also
to develop biotechnology oriented approaches that focus on the
geological significance of microbial activity which will definitely
help to integrate the biological and geological process for better
understanding of biogeochemical process. The editors discuss
the book into three sections with fourteen chapters, each of
them dealing with different domain of geomicrobiology and its
application for mankind in a sustainable manner.
The first section covers an overview of exploration of new
strains of microbe from extreme environment with the help of
advance molecular tools. Discovery of microbes with distinctive
Durgesh Kumar Jaiswal1
and Jay Prakash Verma2
*
1
Hawkesbury Institute for the Environment , Australia
2
Institute of Environment & Sustainable Development, India
*Corresponding author: Jay Prakash Verma, Assistant Professor, Institute of Environment and Sustainable Development, Varanasi-221005, Uttar Pradesh,
India
Submission: December 13, 2017; Published: January 22, 2018
Role of Geomicrobiology and Biogeochemistry
for Bioremediation to Clean the Environment
Environ Anal Eco stud
Copyright © All rights are reserved by Jay Prakash Verma.
CRIMSONpublishers
http://www.crimsonpublishers.com
Abstract
The present review is based on book entitled “Geomicrobiology and Biogeochemistry” which is an interdisciplinary research based compilation
of two or more discipline such as Geology, Microbiology, Biology and Chemistry. Microorganisms have played a role for shaping the earth and making
it more fit for habitation of higher forms of life. The metabolic diversity and capability of microbes have found to harvest energy from oxidation and
reduction process. The exploration on microbiological processes has led to the newly evolving fields of geomicrobiology and biogeochemistry, linking
the geosphere and the biosphere. This book has covered broader research and multidisciplinary aspects such as bioremediation of contaminated
environments, biomining, biotechnological applications of extremophiles, subsurface petroleum microbiology, enhanced oil recovery using microbes
and their products, metal extraction from soil, soil elemental cycling and plant nutrition. It is a comprehensive book that describes current knowledge
of how microbial activities have influenced the biogeochemical processes & how these biogeochemical processes can be helpful in improvement
environmental management for sustaining life.
Keywords: Geomicrobiology; Biogeochemistry; Extremophiles; Bioremediation; Environmental management
Review Article
ISSN 2578-0336
How to cite this article: Durgesh K J, Jay Prakash V. Role of Geomicrobiology and Biogeochemistry for Bioremediation to Clean the Environment. Environ Anal
Eco stud. 1(1). EAES.000505. 2018. DOI: 10.31031/EAES.2018.01.000505
Environmental Analysis & Ecology Studies
2/3
Environ Anal Eco stud
Volume 1 - Issue - 1
characteristics are described within these chapters which could be
utilized for industrial application such as enzymes and chemical
production, waste treatment and recycling, bioremediation of
industrial pollutants in soil and aquifers, enhanced petroleum
oil recovery, bio-mining and soil fertility [8]. The application
of molecular techniques are the study of microbial diversity
and community structure in terms of function, phylogeny, and
community composition within natural environments [9].
A second section of the book deals with the harnessing of
different type’s extremophilic bacteria, such as haloalkaliphile,
its diversity and application to improvement of biotechnology
tools for mankind’s. Extremophiles like Thioalkalivibrio spp.
Desulfonatronum spp. and Halomonas spp. are able to grow in
extreme environment. These type microbes show dual activities in
extreme environment, this make a model for fundamental research
and exploration of biotechnology potential [10]. Furthermore, the
unique metabolic pathways of haloalkaliphiles can be applied in
the biodegradation and (or) biotransformation of a broad range
of toxic industrial pollutants (pesticide) and heavy metals, in
wastewater treatment, and in the biofuel industry [11].
Third section deals with the application of extremophile
microbes in the innovation of biotechnology tools like biomining,
bioremediation and phytoremediation, petroleum recovery and
nutrient cycle for societal development. This section offers to the
solution of all challenges regarding the role of microbes that play
in the geological process in adverse environment and to improve
the biotechnological tools and techniques for human being. The
current challenge is to recovery petroleum from deep subsurface
of petroleum reservoir e.g. biodegradation of hydrocarbon,
microbial interaction with metals and metalloids. The indigenous
microorganismhelpsinreducingchemicalfertilizerandimproving
essential macro and micronutrients in soils for enhancing crop
yields under sustainable development [12].
This book highlights the role of microbes in biogeochemical
cycling of nutrients of all natural ecosystems. Genetic Engineering
has become an important tool for manipulating for enhancing
the utilization of microbes and plants in various industries
including petroleum, food, feed, pharmaceutical, detergent,
and pulp and paper. Novel microbial strains are unremittingly
being discovered and genetic or enzymatic functions are often
reconstructed through DNA and protein engineering techniques
to increase the gene expression and metabolic productivity of
industrially important organisms. Genetically modified microbes
have very unique characters which are broadly exploited for
industrial applications such as enzymes and chemical production,
waste treatment and recycling, bioremediation of industrial
pollutants in soils and aquifers, enhanced petroleum oil recovery,
biomining, and soil fertility. The editors also describe about role
of soil microbes for enhancing crop productivities by plant growth
promoting activities and nutrient availability like potassium and
phosphorus.
Theeditorsshouldincludeonechapterforcomparativestudies
between extremophilic and non extremophilic microbes in the
context of their commercial application for ecological and societal
benefits for human being. The editors should include some case
studies related to biomining, oil recovery and effective application
of genetically modified microbes for cost effective technology in
industries and natural fields while in the literature of research
paper conducted real experiment in control and field condition
then give and transfer technology for commercialization and their
application in the fields. After few minor drawbacks of this book,
it was really very useful and beneficial book which includes about
the aspect of microbial isolation, molecular characterization and
their application for bioremediation, bio-mining, biotransfering
of soil nutrient, biomineralization, oil recovery, metal extraction,
potassium and phosphate solubilisation [13], plant growth
promotion[12].Thefinalconclusionofthisbookoffersthesolution
of fundamental questions in interdisciplinary sciences e.g.,
gemicrobiology, bioremediation and biotechnology with multiple
application for societal development. Various experts and scientist
related to the area of geomicrobiology, bioremediation, ecological
sciences and environmental sciences of diverse institutions have
been contributed their experiences and knowledge in different
chapters of the book, which is useful and beneficial for students,
teachers, researchers, scientist, farmers and policy makers in the
disciplines of soil and geological sciences, microbiology, plant
physiology, environmental engineering and biotechnology.
Acknowledgement
Authors sincerely thank to Dr. P.C. Abhilash for valuable
suggestion for writing a book review. Authors are grateful to DBT
for providing the fellowship of Indo-Australia Carrier Boosting
Gold Fellowship to JPV for working on microbiome research
with collaboration with prof. Brajesh Kumar Singh and also
thank to Prof. Singh for providing wonderful research facility
at Hawkesbury Institute for the Environment, Western, Sydney
University, Penrith, NSW, Australia. There is no any conflict of
interest regarding this book review.
References
1.	 Nagain P, Singh A (2014) The book entitled Geomicrobiology and
Biogeochemistry. Springer, pp. 302.
2.	 Gadd GM, Raven JA (2010) Geomicrobiology of eukaryotic
microorganisms. Geomicrobiol J 27(6-7): 491-519.
3.	 Verma JP, Jaiswal DK, Sagar R (2014) Pesticide relevance and their
microbial degradation: a-state-of-art. Rev Envi Sci Bio/Tech 13(4): 429-
466.
4.	 Gadd GM (2010) Metals, minerals and microbes: geomicrobiology and
bioremediation Microbiol 156: 609-643.
5.	 Ehrlich HL Newman DK (2009) Geomicrobiology. (5th
edn), Boca Raton,
FL: CRC Press, USA, pp. 628.
6.	 Horikoshi K, Bull AT (2011) Part 1: Prologue: Definition, Categories,
Distribution, Origin and Evolution, Pioneering Studies, and Emerging
Fields of Extremophiles. Tokyo, pp. 3-15.
7.	 Templeton AS, Knowles EJ, Eldridge DL, Arey BW, Dohnalkova AC,
et al. (2009) A seafloor microbial biome hosted within incipient
ferromanganese crusts. Nature Geosci 2(12): 872-876.
8.	 Santos PD, Lima Bittencourt CI, Chartone Souza E, Amaral NAM (2007)
How to cite this article: Durgesh K J, Jay Prakash V. Role of Geomicrobiology and Biogeochemistry for Bioremediation to Clean the Environment. Environ Anal
Eco stud. 1(1). EAES.000505. 2018. DOI: 10.31031/EAES.2018.01.000505
3/3
Environ Anal Eco studEnvironmental Analysis & Ecology Studies
Volume 1 - Issue - 1
Molecular approaches: advantages and artifacts in assessing bacterial
diversity. J Indust Microbiol Biotechnol 34(7): 463-473.
9.	 Norlund KI, Southam G, Tyliszczak T, Hu Y, Karunakaran C, et al. (2009)
Microbial architecture of environmental sulphur processes: a novel
syntrophic sulphur metabolizing consortia. Environ Sci Technol 43(23):
8781-8786.
10.	Pandey S, Rakholiya K, Raval VH, Singh SP (2012) Catalysis and stability
of an alkaline protease from a haloalkaliphilic bacterium under non-
aqueous conditions as a function of pH, salt and temperature. J Biosci
Bioen 114(3): 251-256.
11.	De Graaff M, Bijmans MF, Abbas B, Euverink GJ, Muyzer G, et al. (2011)
Biological treatment of refinery spent caustics under halo-alkaline
conditions. Biores Technol 102(15): 7257-7264.
12.	Verma JP, Yadav J, Tiwari KN, Lavakush, Singh V (2010) Impact of plant
growth promoting rhizobacteria on crop Production. Internat J Agri Res
5 (11): 954-983.
13.	Verma JP, Jaiswal DK, Singh S, Kumar A, Prakash S, et al. (2017)
Consequence of phosphate solubilising microbes in sustainable
agriculture as efficient microbial consortium: a review. Climate Change
Envir Sust 5(1): 1-19.

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Role of Geomicrobiology and Biogeochemistry for Bioremediation

  • 1. Volume 1 - Issue - 1 1/3 Introduction The book “Geomicrobiology and Biogeochemistry” edited by Nagain P & Singh A [1] covers a holistic approach of geomicrobiology and biogeochemistry related to important topics of biomining, bioremediation, biotechnological applications of extremophiles, subsurface petroleum microbiology, metal extraction and soil nutrient cycling . In general research, microbes show an important geoactive role in the environment. Microorganism intermingle with metals and minerals in the natural and artificial environment, changing their physical and chemical state, and also these metals has ability to affect the growth activity and behavior of soil flora and fauna [2]. Various types of microbes e.g., prokaryotes, eukaryotes and higher organisms have special mechanisms for biotransformation though the biogeochemical cycle of different element like sulphur, iron, phosphorus, potassium, aluminium, metalloids, actinides and metal radionuclides. These elemental transformations can have ability for beneficial or harmful values in the context of human beings. Some bacteria and fungi having most important properties for bioremediation of organic and inorganic pollutant from contaminated environments [3]. Others, microbes have properties to decay, natural and synthetic materials, rock and mineral-based building materials, acid mine drainage and containment, all with immense social and economic consequences. The benefits of microorganisms in the biosphere categorized as geomicrobiology one of the most important concepts within microbiology for requiring an interdisciplinary approach to delineate ecological conservation and applied significance in biotechnology [4]. Geomicrobiology branch only defines as the roles of microbes in geological processes [5,6]. The present book review also highlighting like geomicrobiology andbiogeochemistry,biomining,bioremediation, biotechnological applications of extremophiles, subsurface petroleum microbiology in details about practical application in biosphere i.e. extremophile, their economic relevance and wide applications for societal benefits [7]. The aim of this book is also to develop biotechnology oriented approaches that focus on the geological significance of microbial activity which will definitely help to integrate the biological and geological process for better understanding of biogeochemical process. The editors discuss the book into three sections with fourteen chapters, each of them dealing with different domain of geomicrobiology and its application for mankind in a sustainable manner. The first section covers an overview of exploration of new strains of microbe from extreme environment with the help of advance molecular tools. Discovery of microbes with distinctive Durgesh Kumar Jaiswal1 and Jay Prakash Verma2 * 1 Hawkesbury Institute for the Environment , Australia 2 Institute of Environment & Sustainable Development, India *Corresponding author: Jay Prakash Verma, Assistant Professor, Institute of Environment and Sustainable Development, Varanasi-221005, Uttar Pradesh, India Submission: December 13, 2017; Published: January 22, 2018 Role of Geomicrobiology and Biogeochemistry for Bioremediation to Clean the Environment Environ Anal Eco stud Copyright © All rights are reserved by Jay Prakash Verma. CRIMSONpublishers http://www.crimsonpublishers.com Abstract The present review is based on book entitled “Geomicrobiology and Biogeochemistry” which is an interdisciplinary research based compilation of two or more discipline such as Geology, Microbiology, Biology and Chemistry. Microorganisms have played a role for shaping the earth and making it more fit for habitation of higher forms of life. The metabolic diversity and capability of microbes have found to harvest energy from oxidation and reduction process. The exploration on microbiological processes has led to the newly evolving fields of geomicrobiology and biogeochemistry, linking the geosphere and the biosphere. This book has covered broader research and multidisciplinary aspects such as bioremediation of contaminated environments, biomining, biotechnological applications of extremophiles, subsurface petroleum microbiology, enhanced oil recovery using microbes and their products, metal extraction from soil, soil elemental cycling and plant nutrition. It is a comprehensive book that describes current knowledge of how microbial activities have influenced the biogeochemical processes & how these biogeochemical processes can be helpful in improvement environmental management for sustaining life. Keywords: Geomicrobiology; Biogeochemistry; Extremophiles; Bioremediation; Environmental management Review Article ISSN 2578-0336
  • 2. How to cite this article: Durgesh K J, Jay Prakash V. Role of Geomicrobiology and Biogeochemistry for Bioremediation to Clean the Environment. Environ Anal Eco stud. 1(1). EAES.000505. 2018. DOI: 10.31031/EAES.2018.01.000505 Environmental Analysis & Ecology Studies 2/3 Environ Anal Eco stud Volume 1 - Issue - 1 characteristics are described within these chapters which could be utilized for industrial application such as enzymes and chemical production, waste treatment and recycling, bioremediation of industrial pollutants in soil and aquifers, enhanced petroleum oil recovery, bio-mining and soil fertility [8]. The application of molecular techniques are the study of microbial diversity and community structure in terms of function, phylogeny, and community composition within natural environments [9]. A second section of the book deals with the harnessing of different type’s extremophilic bacteria, such as haloalkaliphile, its diversity and application to improvement of biotechnology tools for mankind’s. Extremophiles like Thioalkalivibrio spp. Desulfonatronum spp. and Halomonas spp. are able to grow in extreme environment. These type microbes show dual activities in extreme environment, this make a model for fundamental research and exploration of biotechnology potential [10]. Furthermore, the unique metabolic pathways of haloalkaliphiles can be applied in the biodegradation and (or) biotransformation of a broad range of toxic industrial pollutants (pesticide) and heavy metals, in wastewater treatment, and in the biofuel industry [11]. Third section deals with the application of extremophile microbes in the innovation of biotechnology tools like biomining, bioremediation and phytoremediation, petroleum recovery and nutrient cycle for societal development. This section offers to the solution of all challenges regarding the role of microbes that play in the geological process in adverse environment and to improve the biotechnological tools and techniques for human being. The current challenge is to recovery petroleum from deep subsurface of petroleum reservoir e.g. biodegradation of hydrocarbon, microbial interaction with metals and metalloids. The indigenous microorganismhelpsinreducingchemicalfertilizerandimproving essential macro and micronutrients in soils for enhancing crop yields under sustainable development [12]. This book highlights the role of microbes in biogeochemical cycling of nutrients of all natural ecosystems. Genetic Engineering has become an important tool for manipulating for enhancing the utilization of microbes and plants in various industries including petroleum, food, feed, pharmaceutical, detergent, and pulp and paper. Novel microbial strains are unremittingly being discovered and genetic or enzymatic functions are often reconstructed through DNA and protein engineering techniques to increase the gene expression and metabolic productivity of industrially important organisms. Genetically modified microbes have very unique characters which are broadly exploited for industrial applications such as enzymes and chemical production, waste treatment and recycling, bioremediation of industrial pollutants in soils and aquifers, enhanced petroleum oil recovery, biomining, and soil fertility. The editors also describe about role of soil microbes for enhancing crop productivities by plant growth promoting activities and nutrient availability like potassium and phosphorus. Theeditorsshouldincludeonechapterforcomparativestudies between extremophilic and non extremophilic microbes in the context of their commercial application for ecological and societal benefits for human being. The editors should include some case studies related to biomining, oil recovery and effective application of genetically modified microbes for cost effective technology in industries and natural fields while in the literature of research paper conducted real experiment in control and field condition then give and transfer technology for commercialization and their application in the fields. After few minor drawbacks of this book, it was really very useful and beneficial book which includes about the aspect of microbial isolation, molecular characterization and their application for bioremediation, bio-mining, biotransfering of soil nutrient, biomineralization, oil recovery, metal extraction, potassium and phosphate solubilisation [13], plant growth promotion[12].Thefinalconclusionofthisbookoffersthesolution of fundamental questions in interdisciplinary sciences e.g., gemicrobiology, bioremediation and biotechnology with multiple application for societal development. Various experts and scientist related to the area of geomicrobiology, bioremediation, ecological sciences and environmental sciences of diverse institutions have been contributed their experiences and knowledge in different chapters of the book, which is useful and beneficial for students, teachers, researchers, scientist, farmers and policy makers in the disciplines of soil and geological sciences, microbiology, plant physiology, environmental engineering and biotechnology. Acknowledgement Authors sincerely thank to Dr. P.C. Abhilash for valuable suggestion for writing a book review. Authors are grateful to DBT for providing the fellowship of Indo-Australia Carrier Boosting Gold Fellowship to JPV for working on microbiome research with collaboration with prof. Brajesh Kumar Singh and also thank to Prof. Singh for providing wonderful research facility at Hawkesbury Institute for the Environment, Western, Sydney University, Penrith, NSW, Australia. There is no any conflict of interest regarding this book review. References 1. Nagain P, Singh A (2014) The book entitled Geomicrobiology and Biogeochemistry. Springer, pp. 302. 2. Gadd GM, Raven JA (2010) Geomicrobiology of eukaryotic microorganisms. Geomicrobiol J 27(6-7): 491-519. 3. Verma JP, Jaiswal DK, Sagar R (2014) Pesticide relevance and their microbial degradation: a-state-of-art. Rev Envi Sci Bio/Tech 13(4): 429- 466. 4. Gadd GM (2010) Metals, minerals and microbes: geomicrobiology and bioremediation Microbiol 156: 609-643. 5. Ehrlich HL Newman DK (2009) Geomicrobiology. (5th edn), Boca Raton, FL: CRC Press, USA, pp. 628. 6. Horikoshi K, Bull AT (2011) Part 1: Prologue: Definition, Categories, Distribution, Origin and Evolution, Pioneering Studies, and Emerging Fields of Extremophiles. Tokyo, pp. 3-15. 7. Templeton AS, Knowles EJ, Eldridge DL, Arey BW, Dohnalkova AC, et al. (2009) A seafloor microbial biome hosted within incipient ferromanganese crusts. Nature Geosci 2(12): 872-876. 8. Santos PD, Lima Bittencourt CI, Chartone Souza E, Amaral NAM (2007)
  • 3. How to cite this article: Durgesh K J, Jay Prakash V. Role of Geomicrobiology and Biogeochemistry for Bioremediation to Clean the Environment. Environ Anal Eco stud. 1(1). EAES.000505. 2018. DOI: 10.31031/EAES.2018.01.000505 3/3 Environ Anal Eco studEnvironmental Analysis & Ecology Studies Volume 1 - Issue - 1 Molecular approaches: advantages and artifacts in assessing bacterial diversity. J Indust Microbiol Biotechnol 34(7): 463-473. 9. Norlund KI, Southam G, Tyliszczak T, Hu Y, Karunakaran C, et al. (2009) Microbial architecture of environmental sulphur processes: a novel syntrophic sulphur metabolizing consortia. Environ Sci Technol 43(23): 8781-8786. 10. Pandey S, Rakholiya K, Raval VH, Singh SP (2012) Catalysis and stability of an alkaline protease from a haloalkaliphilic bacterium under non- aqueous conditions as a function of pH, salt and temperature. J Biosci Bioen 114(3): 251-256. 11. De Graaff M, Bijmans MF, Abbas B, Euverink GJ, Muyzer G, et al. (2011) Biological treatment of refinery spent caustics under halo-alkaline conditions. Biores Technol 102(15): 7257-7264. 12. Verma JP, Yadav J, Tiwari KN, Lavakush, Singh V (2010) Impact of plant growth promoting rhizobacteria on crop Production. Internat J Agri Res 5 (11): 954-983. 13. Verma JP, Jaiswal DK, Singh S, Kumar A, Prakash S, et al. (2017) Consequence of phosphate solubilising microbes in sustainable agriculture as efficient microbial consortium: a review. Climate Change Envir Sust 5(1): 1-19.