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Biosynthetic
Pathways for
Terpenoids
and
Coumarins
Presented by Chhavi
M. Pharm 1st Year
Delhi Pharmaceutical Sciences and
Research University
Jens
Martensson
Contents
A. Terpenoids
• Introduction
• Therapeutic Properties
• Classification
• Biosynthesis
• Details of Cucurbitacin
B. Coumarins
• Introduction
• Details of Umbelliferon
2
Jens
Martensson
Terpenoids
Introduction
• Represent the largest class of natural products with a
diverse array of structures and functions
• Terpenoids are secondary metabolites mostly produced
by plants and some by bacteria or yeast
• With around 64, 000 known compounds, are considered
the largest and most diverse class of natural products
• Widely used in the flavors and fragrance industries, in
addition to being a source of biofuels
3
Jens
Martensson
Therapeutic Properties
• Antimicrobial
• Antifungal
• Antiviral
• Antiparasitic
• Antihyperglycemic
• Antiallergenic
• Anti-inflammatory
• Antispasmodic
• Immunomodulatory
• Chemotherapeutic properties
4
Examples of Some Terpenoids
Jens
Martensson
5
Also be used as
• Natural insecticides
• Protective substances
in storing agriculture products
Terpenoids recently emerge as strong
players in the biofuel market
Among the terpenoids with established
medical applications are
• Antimalarial - Artemisinin
• Anticancer - Taxol
Continued…
Jens
Martensson
6
Classification of Terpenoids
Terpenoids are usually classified according to the number and structural organization of
the five carbon isoprene units involved in their synthesis as
Structure of an Isoprene unit
Jens
Martensson
7
• Despite the enormous structural differences between terpenoids, they are all derived from the same C5
skeleton of isoprene
• The terpenoidal backbone is synthesized from the two precursors:
a. Isopentenyl pyrophosphate (IPP)
b. Dimethylallyl pyrophosphate (DMAPP)
through a different number of repeats, rearrangement and cyclization reactions
• Two distinct biosynthetic pathways for the formation of these universal precursors have been reported,
1. The Mevalonate (MVA) Pathway
2. The 2C-methyl-D-erythritol-4-phosphate (MEP) Pathway
also known as the 1-deoxy-D-xylulose- 5-phosphate (DXP) Pathway
Biosynthesis of Terpenoids
Jens
Martensson
8
Biosynthesis Pathways
• Present in eukaryotes (all mammals,
the cytosol and mitochondria of
plants, fungi), archaea, and some
eubacteria
• Comprises seven enzymatic reactions
to convert the precursor acetyl-CoA
to IPP and DMAPP
M E P
• Occur in eubacteria, algae,
cyanobacteria, and the chloroplasts of
plants
• Converts the starting materials, pyruvate
and glyceraldehyde-3-phosphate, to IPP
and DMAPP through eight enzymatic
reactions
M V A
Jens
Martensson
9
• The linear prenyl diphosphates such as geranyl pyrophosphate (GPP), farnesyl pyrophosphate (FPP),
geranylgeranyl pyrophosphate (GGPP), and farnesyl geranyl pyrophosphate (FGPP) are synthesized from the
two basic building blocks, IPP and DMAPP where a group of enzymes called prenyltransferases repeatedly
add the active isoprene unit (IPP) to DMAPP or a prenyl diphosphate in consecutive head-to-tail
condensations leading to the production of a range of molecules with fixed lengths and stereochemistry
• Geranyl pyrophosphate synthase (GPPS) and farnesyl pyrophosphate synthase (FPPS) catalyze the
condensation of IPP and DMAPP to produce GPP (C10) and FPP (C15)
• Geranylgeranyl pyrophosphate synthase (GGPPS) and farnesyl geranyl pyrophosphate synthase (FGPPS) are
responsible for formation of GGPP (C20) and FGPP (C25)
• The precursors GPP, FPP, GGPP and FGPP, are cyclized and/or rearranged by different terpene synthase
enzymes to produce the different classes of terpenoids
Continued…
Jens
Martensson
10
Jens
Martensson
11
Continued…
Jens
Martensson
CHARACTERIZATION
Terpenoids are
• colorless liquid
• Soluble in organic solvent
• Insoluble in water
• Volatile in nature.
• B.P. is150-180ºC
• Unsaturated compound
• Contain isoprene unit in chemical
structure.
12
Jens
Martensson
Cucurbitacin
Introduction
• Bitter-tasting principle that can be
isolated from members of the family
Cucurbitaceae, such as cucumber
(Cucumis sativus) and melon (Cucumis
melo L.)
• In particular, cucurbitacin and
momordicine, which have an intensely
bitter taste, are contained abundantly in
Momordica charantia
• There are more than 18 kinds of
cucurbitacin, and among them
cucurbitacin B is a typical component
13
Jens
Martensson
DIFFERENT SOURCE OF CUCURBITACIN
14
Momordica
Melon
Pumpkin
Cucumber
Jens
Martensson
USES
• Anti-inflammatory
• Anti-tumor
• Anti-diabetic
• Anti-artherosclerotic
• Anti-oxidant activity
15
CHARACTERIZATION
• Taste – bitter
• Color - yellowish
• Mol. Formula - C32H44O8
• Molecular weight - 556.696 g/mol
• Chemical structure of cucurbitacin
Jens
Martensson
16
Biosynthesis
Jens
Martensson
17
ISOLATION
Cucurbitacin containing plant
material
Pressing
Liquid containing cucurbitacin
Extracted with non polar solvent like chloroform to
remove the waxes, pigments, fatty acid terpenes
Separated liquid is then extracted with moderately polar
solvent like water
Separation of cucurbitacin
Collection of cucurbitacin
Jens
Martensson
PURIFICATION
• It can be done by using flash
chromatography, column
chromatography, paper chromatography
TLC
• Solvent system used TLC are
i. Toluene : ethyl acetate (40 : 60)
ii. Chloroform : ethanol (95: 5)
• Structure identify by following method
- By UV spectroscopy
- By IR spectroscopy
- By Mass spectroscopy
- By NMR spectroscopy
18
Jens
Martensson
• Plant-derived natural products
• Colorless crystalline substance in its standard state
• Fragrant organic chemical compound in the benzopyrone chemical class, although it
may also be seen as a subclass of lactones
• Exhibit various biological activities such as Antibacterial, Antioxidant, Anti-
inflammatory, Rodenticidal, Termiticidal etc.
• Based on their structural and biosynthetic properties, plant coumarins are
categorized as follows:
1. simple coumarins
2. Furanocoumarins
3. Pyranocoumarins
4. Coumarins with modifications in the pyrone ring
Coumarins
19
Jens
Martensson
Continued…
• It has a sweet odor, and has been use in
perfumes
• Coumarin is classify in various class such as
simple coumarin, furocoumarin,
pyrancoumarin etc.
• It is naturally occur in different family such as
umbelliferae, rutaceae, leguminoseae etc.
• It is used in the pharmaceutical industry as a
precursor reagent in the synthesis of a number
of synthetic anticoagulant
20
Jens
Martensson
Umbelliferone
• Umbelliferone, also known as 7 hydroxycoumarin, hydrangine, skimmetine, and beta-
umbelliferone, is a natural product of the coumarin family. it is benzopyron in nature
• Source: Umbelliferone occurs in many familiar plants from the Apiaceae (Umbelliferae)
family such as carrot, coriander and garden angelica, as well as in plants from other
families
21
Jens
Martensson
Biosynthesis
22
1. Umbelliferone From malic acid
Jens
Martensson
23
1. The phenylpropanoid biosynthetic path way for coumarins synthesis.
2. The key steps in the biosynthesis of umbelliferone coumarin are the cinnamic acid synthesis or para
and ortho hydroxylations, trans-cis isomerization of the double bond and finally lactonization of
cinnamic acid
3. From trans - cinnamic acid
Continued…
Jens
Martensson
ISOLATION AND EXTRACTION
24
• From Bark Acacia nilotica, Family Mimosaceae
Bark
Powder
Extraction with hexan
(thrice)
24h at room temp.
Residu
e
Hexan
extraxct
Extraction with chloroform
(thrice)
24h at room temp
Residu
e
Chloroform extract
Extraction with ethyl acetate
(thrice)
24h at room temp.
Ethyl acetate
extract
Residue
Jens
Martensson
25
Residue
Residue Acetone extract
Extraction with acetone
(thrice)
24h at room temp
Extraction with methanol
(thrice)
24h at room temp.
Residue Methanol
extract
Subjected to column
chromatography
Extraction with water (thrice)
24h at room temp
Residue Water extract
Flow chart of extraction of various extracts Acacia nilotica
in increasing order of solvent polarity.
Jens
Martensson
It can be done by
• HPTLC
• HPLC
• Flash chromatography
• Column chromatography
• Paper chromatography
Structure identify by following method
• UV spectroscopy
• IR spectroscopy
• Mass spectroscopy
• NMR spectroscopy
PURIFICATION
26
Jens
Martensson
• Color - yellowish-white crystals
• Taste - bitter
• Solubility - slightly soluble in hot water, but have good solubility in ethanol
• Molecular formula - C9H6O3
• Molecular weight - 130g/mol
• Melting point - 224–227ºC
• Molecular structure
CHARACTERIZATION
27
Jens
Martensson
• The ultraviolet activity of umbelliferone lead to its use as a sunscreen agent
• As an anti bacterial and antifungal activity
• Used in diabetes
• Anti cancer and anti toxicity
• Molluscicdal activities
• Fluorescent probe
• An optical brightener for textiles
USES
28
Jens
Martensson
References
• AGlimpseintotheBiosynthesisofTerpenoids.pdf
• http://dl.konkur.in/post/Book/MedicalScience/Trease-and-Evans-Pharmacognosy-16th-
Edition-%5Bkonkur.in%5D.pdf
• https://www.researchgate.net/figure/Coumarin-biosynthetic-pathway-in-plants-Simple-
coumarins-coumarin-1-umbelliferone_fig2_268786426
• coumarinandterpenoids-190911161949.pdf
• Evans & Trease, A textbook of Pharmacognosy
29
Any
questions ?
Thank
You

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Biosynthetic Pathway for Terpenoids and Coumarins.pptx

  • 1. Biosynthetic Pathways for Terpenoids and Coumarins Presented by Chhavi M. Pharm 1st Year Delhi Pharmaceutical Sciences and Research University
  • 2. Jens Martensson Contents A. Terpenoids • Introduction • Therapeutic Properties • Classification • Biosynthesis • Details of Cucurbitacin B. Coumarins • Introduction • Details of Umbelliferon 2
  • 3. Jens Martensson Terpenoids Introduction • Represent the largest class of natural products with a diverse array of structures and functions • Terpenoids are secondary metabolites mostly produced by plants and some by bacteria or yeast • With around 64, 000 known compounds, are considered the largest and most diverse class of natural products • Widely used in the flavors and fragrance industries, in addition to being a source of biofuels 3
  • 4. Jens Martensson Therapeutic Properties • Antimicrobial • Antifungal • Antiviral • Antiparasitic • Antihyperglycemic • Antiallergenic • Anti-inflammatory • Antispasmodic • Immunomodulatory • Chemotherapeutic properties 4 Examples of Some Terpenoids
  • 5. Jens Martensson 5 Also be used as • Natural insecticides • Protective substances in storing agriculture products Terpenoids recently emerge as strong players in the biofuel market Among the terpenoids with established medical applications are • Antimalarial - Artemisinin • Anticancer - Taxol Continued…
  • 6. Jens Martensson 6 Classification of Terpenoids Terpenoids are usually classified according to the number and structural organization of the five carbon isoprene units involved in their synthesis as Structure of an Isoprene unit
  • 7. Jens Martensson 7 • Despite the enormous structural differences between terpenoids, they are all derived from the same C5 skeleton of isoprene • The terpenoidal backbone is synthesized from the two precursors: a. Isopentenyl pyrophosphate (IPP) b. Dimethylallyl pyrophosphate (DMAPP) through a different number of repeats, rearrangement and cyclization reactions • Two distinct biosynthetic pathways for the formation of these universal precursors have been reported, 1. The Mevalonate (MVA) Pathway 2. The 2C-methyl-D-erythritol-4-phosphate (MEP) Pathway also known as the 1-deoxy-D-xylulose- 5-phosphate (DXP) Pathway Biosynthesis of Terpenoids
  • 8. Jens Martensson 8 Biosynthesis Pathways • Present in eukaryotes (all mammals, the cytosol and mitochondria of plants, fungi), archaea, and some eubacteria • Comprises seven enzymatic reactions to convert the precursor acetyl-CoA to IPP and DMAPP M E P • Occur in eubacteria, algae, cyanobacteria, and the chloroplasts of plants • Converts the starting materials, pyruvate and glyceraldehyde-3-phosphate, to IPP and DMAPP through eight enzymatic reactions M V A
  • 9. Jens Martensson 9 • The linear prenyl diphosphates such as geranyl pyrophosphate (GPP), farnesyl pyrophosphate (FPP), geranylgeranyl pyrophosphate (GGPP), and farnesyl geranyl pyrophosphate (FGPP) are synthesized from the two basic building blocks, IPP and DMAPP where a group of enzymes called prenyltransferases repeatedly add the active isoprene unit (IPP) to DMAPP or a prenyl diphosphate in consecutive head-to-tail condensations leading to the production of a range of molecules with fixed lengths and stereochemistry • Geranyl pyrophosphate synthase (GPPS) and farnesyl pyrophosphate synthase (FPPS) catalyze the condensation of IPP and DMAPP to produce GPP (C10) and FPP (C15) • Geranylgeranyl pyrophosphate synthase (GGPPS) and farnesyl geranyl pyrophosphate synthase (FGPPS) are responsible for formation of GGPP (C20) and FGPP (C25) • The precursors GPP, FPP, GGPP and FGPP, are cyclized and/or rearranged by different terpene synthase enzymes to produce the different classes of terpenoids Continued…
  • 12. Jens Martensson CHARACTERIZATION Terpenoids are • colorless liquid • Soluble in organic solvent • Insoluble in water • Volatile in nature. • B.P. is150-180ºC • Unsaturated compound • Contain isoprene unit in chemical structure. 12
  • 13. Jens Martensson Cucurbitacin Introduction • Bitter-tasting principle that can be isolated from members of the family Cucurbitaceae, such as cucumber (Cucumis sativus) and melon (Cucumis melo L.) • In particular, cucurbitacin and momordicine, which have an intensely bitter taste, are contained abundantly in Momordica charantia • There are more than 18 kinds of cucurbitacin, and among them cucurbitacin B is a typical component 13
  • 14. Jens Martensson DIFFERENT SOURCE OF CUCURBITACIN 14 Momordica Melon Pumpkin Cucumber
  • 15. Jens Martensson USES • Anti-inflammatory • Anti-tumor • Anti-diabetic • Anti-artherosclerotic • Anti-oxidant activity 15 CHARACTERIZATION • Taste – bitter • Color - yellowish • Mol. Formula - C32H44O8 • Molecular weight - 556.696 g/mol • Chemical structure of cucurbitacin
  • 17. Jens Martensson 17 ISOLATION Cucurbitacin containing plant material Pressing Liquid containing cucurbitacin Extracted with non polar solvent like chloroform to remove the waxes, pigments, fatty acid terpenes Separated liquid is then extracted with moderately polar solvent like water Separation of cucurbitacin Collection of cucurbitacin
  • 18. Jens Martensson PURIFICATION • It can be done by using flash chromatography, column chromatography, paper chromatography TLC • Solvent system used TLC are i. Toluene : ethyl acetate (40 : 60) ii. Chloroform : ethanol (95: 5) • Structure identify by following method - By UV spectroscopy - By IR spectroscopy - By Mass spectroscopy - By NMR spectroscopy 18
  • 19. Jens Martensson • Plant-derived natural products • Colorless crystalline substance in its standard state • Fragrant organic chemical compound in the benzopyrone chemical class, although it may also be seen as a subclass of lactones • Exhibit various biological activities such as Antibacterial, Antioxidant, Anti- inflammatory, Rodenticidal, Termiticidal etc. • Based on their structural and biosynthetic properties, plant coumarins are categorized as follows: 1. simple coumarins 2. Furanocoumarins 3. Pyranocoumarins 4. Coumarins with modifications in the pyrone ring Coumarins 19
  • 20. Jens Martensson Continued… • It has a sweet odor, and has been use in perfumes • Coumarin is classify in various class such as simple coumarin, furocoumarin, pyrancoumarin etc. • It is naturally occur in different family such as umbelliferae, rutaceae, leguminoseae etc. • It is used in the pharmaceutical industry as a precursor reagent in the synthesis of a number of synthetic anticoagulant 20
  • 21. Jens Martensson Umbelliferone • Umbelliferone, also known as 7 hydroxycoumarin, hydrangine, skimmetine, and beta- umbelliferone, is a natural product of the coumarin family. it is benzopyron in nature • Source: Umbelliferone occurs in many familiar plants from the Apiaceae (Umbelliferae) family such as carrot, coriander and garden angelica, as well as in plants from other families 21
  • 23. Jens Martensson 23 1. The phenylpropanoid biosynthetic path way for coumarins synthesis. 2. The key steps in the biosynthesis of umbelliferone coumarin are the cinnamic acid synthesis or para and ortho hydroxylations, trans-cis isomerization of the double bond and finally lactonization of cinnamic acid 3. From trans - cinnamic acid Continued…
  • 24. Jens Martensson ISOLATION AND EXTRACTION 24 • From Bark Acacia nilotica, Family Mimosaceae Bark Powder Extraction with hexan (thrice) 24h at room temp. Residu e Hexan extraxct Extraction with chloroform (thrice) 24h at room temp Residu e Chloroform extract Extraction with ethyl acetate (thrice) 24h at room temp. Ethyl acetate extract Residue
  • 25. Jens Martensson 25 Residue Residue Acetone extract Extraction with acetone (thrice) 24h at room temp Extraction with methanol (thrice) 24h at room temp. Residue Methanol extract Subjected to column chromatography Extraction with water (thrice) 24h at room temp Residue Water extract Flow chart of extraction of various extracts Acacia nilotica in increasing order of solvent polarity.
  • 26. Jens Martensson It can be done by • HPTLC • HPLC • Flash chromatography • Column chromatography • Paper chromatography Structure identify by following method • UV spectroscopy • IR spectroscopy • Mass spectroscopy • NMR spectroscopy PURIFICATION 26
  • 27. Jens Martensson • Color - yellowish-white crystals • Taste - bitter • Solubility - slightly soluble in hot water, but have good solubility in ethanol • Molecular formula - C9H6O3 • Molecular weight - 130g/mol • Melting point - 224–227ºC • Molecular structure CHARACTERIZATION 27
  • 28. Jens Martensson • The ultraviolet activity of umbelliferone lead to its use as a sunscreen agent • As an anti bacterial and antifungal activity • Used in diabetes • Anti cancer and anti toxicity • Molluscicdal activities • Fluorescent probe • An optical brightener for textiles USES 28
  • 29. Jens Martensson References • AGlimpseintotheBiosynthesisofTerpenoids.pdf • http://dl.konkur.in/post/Book/MedicalScience/Trease-and-Evans-Pharmacognosy-16th- Edition-%5Bkonkur.in%5D.pdf • https://www.researchgate.net/figure/Coumarin-biosynthetic-pathway-in-plants-Simple- coumarins-coumarin-1-umbelliferone_fig2_268786426 • coumarinandterpenoids-190911161949.pdf • Evans & Trease, A textbook of Pharmacognosy 29